Wall clock time and date at job start Mon Mar 30 2020 02:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.39843 * 126.45834 * 2 1 4 4 C 1.35456 * 107.86479 * 180.26749 * 3 2 1 5 5 N 1.35530 * 108.87226 * 359.73418 * 4 3 2 6 6 H 0.96994 * 125.67692 * 179.97438 * 5 4 3 7 7 C 1.37658 * 108.64500 * 0.02562 * 5 4 3 8 8 C 1.46674 * 126.23120 * 180.02562 * 7 5 4 9 9 O 1.21699 * 119.99537 * 180.02562 * 8 7 5 10 10 N 1.34773 * 120.00425 * 0.02562 * 8 7 5 11 11 C 1.46503 * 120.00358 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.46913 * 34.99538 * 11 10 8 13 13 C 1.52997 * 109.47269 * 154.99590 * 11 10 8 14 14 N 1.46505 * 109.47212 * 304.99931 * 13 11 10 15 15 C 1.36936 * 119.99992 * 179.97438 * 14 13 11 16 16 H 1.08006 * 119.99834 * 0.02562 * 15 14 13 17 17 C 1.38801 * 120.00093 * 180.02562 * 15 14 13 18 18 N 1.31619 * 120.00176 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00265 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46951 * 89.99797 * 19 17 15 21 21 H 1.48500 * 109.47313 * 210.00112 * 19 17 15 22 22 H 1.48501 * 109.46991 * 330.00153 * 19 17 15 23 23 C 1.52997 * 109.46834 * 274.99972 * 11 10 8 24 24 C 1.53002 * 117.50022 * 128.74672 * 23 11 10 25 25 C 1.52997 * 117.50076 * 60.08477 * 23 11 10 26 26 H 1.09006 * 109.46953 * 270.18593 * 1 2 3 27 27 H 1.09000 * 109.47522 * 30.18200 * 1 2 3 28 28 H 1.08998 * 109.46996 * 150.18494 * 1 2 3 29 29 H 1.07995 * 126.06676 * 359.97438 * 3 2 1 30 30 H 1.07999 * 125.55925 * 179.71796 * 4 3 2 31 31 H 0.97007 * 119.99723 * 359.97438 * 10 8 7 32 32 H 1.09002 * 109.47153 * 184.99923 * 13 11 10 33 33 H 1.09001 * 109.46832 * 65.00114 * 13 11 10 34 34 H 0.96996 * 119.99606 * 0.02562 * 14 13 11 35 35 H 0.97001 * 120.00803 * 179.97438 * 18 17 15 36 36 H 1.09003 * 115.54905 * 274.41110 * 23 11 10 37 37 H 1.09000 * 117.49650 * 359.97438 * 24 23 11 38 38 H 1.09001 * 117.49817 * 145.01411 * 24 23 11 39 39 H 1.08996 * 117.49862 * 214.97497 * 25 23 11 40 40 H 1.08996 * 117.50355 * 359.97438 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6928 -0.0060 5 7 3.6284 -0.6624 -0.0039 6 1 4.4190 -1.2243 -0.0074 7 6 2.3262 -1.1089 0.0031 8 6 1.8899 -2.5092 0.0080 9 8 0.7026 -2.7765 0.0136 10 7 2.8037 -3.4999 0.0063 11 6 2.3678 -4.8985 0.0106 12 1 1.4537 -4.9960 -0.5751 13 6 3.4618 -5.7755 -0.6017 14 7 3.8007 -5.2734 -1.9356 15 6 4.7619 -5.9032 -2.6805 16 1 5.2698 -6.7703 -2.2847 17 6 5.0833 -5.4272 -3.9441 18 7 4.4647 -4.3702 -4.4262 19 14 6.3940 -6.2866 -4.9605 20 1 5.7625 -7.3433 -5.7910 21 1 7.0638 -5.2977 -5.8428 22 1 7.3976 -6.9022 -4.0554 23 6 2.1017 -5.3453 1.4495 24 6 0.7560 -6.0105 1.7453 25 6 1.0316 -4.5877 2.2380 26 1 -0.3633 0.0033 1.0277 27 1 -0.3634 0.8883 -0.5166 28 1 -0.3633 -0.8916 -0.5110 29 1 2.0136 2.1549 -0.0004 30 1 4.4972 1.3253 -0.0119 31 1 3.7500 -3.2867 0.0015 32 1 3.1033 -6.8019 -0.6801 33 1 4.3476 -5.7475 0.0330 34 1 3.3448 -4.4945 -2.2909 35 1 4.6896 -4.0372 -5.3091 36 1 2.9720 -5.7042 1.9989 37 1 0.0601 -6.1295 0.9148 38 1 0.7410 -6.8067 2.4895 39 1 1.1977 -4.4485 3.3062 40 1 0.5175 -3.7707 1.7319 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569301716.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:12 Heat of formation + Delta-G solvation = 19.469694 kcal Electronic energy + Delta-G solvation = -21721.202458 eV Core-core repulsion = 18536.721137 eV Total energy + Delta-G solvation = -3184.481321 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.25429 -40.57385 -38.29090 -36.64890 -35.10787 -33.49993 -32.94437 -30.85261 -29.47483 -27.70883 -25.95024 -23.79125 -23.11678 -23.04259 -21.74153 -21.24655 -20.20567 -19.56401 -19.06174 -17.39944 -16.85861 -16.66795 -16.42790 -15.93068 -15.51493 -15.12788 -14.99727 -14.68004 -14.52018 -14.32393 -13.95936 -13.61830 -13.55082 -13.21848 -13.14411 -12.81778 -12.73397 -12.54323 -12.47604 -12.26580 -12.09489 -11.87053 -11.29239 -11.12125 -11.01352 -10.80450 -10.02491 -9.65912 -9.06241 -9.04953 -7.96508 -5.27043 0.53098 1.46800 1.48619 1.56704 1.87589 2.09224 2.29785 2.40967 2.53956 3.02360 3.37662 3.55784 3.88989 3.99100 4.10627 4.15792 4.26433 4.27974 4.35455 4.42307 4.45324 4.60572 4.81414 4.86201 4.89989 4.92686 5.01922 5.05018 5.09113 5.20216 5.27699 5.35528 5.47806 5.49685 5.54770 5.82688 6.04061 6.23090 6.51677 6.65064 7.22430 7.30713 8.02924 8.27423 9.26137 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013602 B = 0.005748 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.090814 B = 4870.268998 C = 6388.553014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.096 4.096 3 C -0.229 4.229 4 C 0.041 3.959 5 N -0.533 5.533 6 H 0.425 0.575 7 C -0.089 4.089 8 C 0.587 3.413 9 O -0.561 6.561 10 N -0.705 5.705 11 C 0.181 3.819 12 H 0.059 0.941 13 C 0.150 3.850 14 N -0.742 5.742 15 C -0.245 4.245 16 H 0.080 0.920 17 C -0.073 4.073 18 N -0.968 5.968 19 Si 0.974 3.026 20 H -0.291 1.291 21 H -0.297 1.297 22 H -0.266 1.266 23 C -0.166 4.166 24 C -0.162 4.162 25 C -0.183 4.183 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.053 0.947 29 H 0.164 0.836 30 H 0.210 0.790 31 H 0.401 0.599 32 H 0.038 0.962 33 H 0.041 0.959 34 H 0.373 0.627 35 H 0.250 0.750 36 H 0.121 0.879 37 H 0.082 0.918 38 H 0.117 0.883 39 H 0.102 0.898 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.909 7.818 14.566 16.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 C -0.252 4.252 4 C -0.095 4.095 5 N -0.129 5.129 6 H 0.264 0.736 7 C -0.201 4.201 8 C 0.377 3.623 9 O -0.442 6.442 10 N -0.354 5.354 11 C 0.076 3.924 12 H 0.077 0.923 13 C 0.023 3.977 14 N -0.386 5.386 15 C -0.376 4.376 16 H 0.098 0.902 17 C -0.265 4.265 18 N -0.619 5.619 19 Si 0.803 3.197 20 H -0.218 1.218 21 H -0.224 1.224 22 H -0.191 1.191 23 C -0.185 4.185 24 C -0.200 4.200 25 C -0.220 4.220 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.072 0.928 29 H 0.181 0.819 30 H 0.227 0.773 31 H 0.236 0.764 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.205 0.795 35 H 0.059 0.941 36 H 0.139 0.861 37 H 0.100 0.900 38 H 0.135 0.865 39 H 0.121 0.879 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.487 7.305 14.543 16.463 hybrid contribution 1.201 -0.368 -1.163 1.712 sum -1.286 6.937 13.380 15.126 Atomic orbital electron populations 1.20272 0.89413 1.02356 1.02106 1.20276 0.96371 0.91697 1.02179 1.21091 0.92003 0.99108 1.13036 1.22696 1.00603 0.82594 1.03650 1.42035 1.06691 1.08076 1.56074 0.73611 1.20183 0.85261 0.93004 1.21666 1.17285 0.85673 0.83861 0.75529 1.90683 1.17182 1.83788 1.52541 1.45761 1.09508 1.05724 1.74384 1.20563 0.97342 0.80003 0.94507 0.92284 1.21047 0.94991 0.95672 0.85952 1.42519 1.45809 1.35106 1.15123 1.19630 1.12164 1.08698 0.97122 0.90225 1.25557 1.02709 0.99188 0.99043 1.69839 1.46576 1.27036 1.18402 0.85140 0.78909 0.77112 0.78553 1.21834 1.22369 1.19062 1.22564 0.94494 1.06116 0.95366 1.22983 0.97308 0.96227 1.03435 1.23196 1.02564 0.96190 1.00012 0.91215 0.90382 0.92815 0.81888 0.77299 0.76418 0.94407 0.94073 0.79504 0.94143 0.86075 0.89967 0.86518 0.87946 0.88837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.33 9.83 71.23 0.70 -1.63 16 2 C -0.10 -2.82 6.21 -19.56 -0.12 -2.94 16 3 C -0.23 -5.23 10.76 22.02 0.24 -4.99 16 4 C 0.04 0.82 11.89 83.48 0.99 1.81 16 5 N -0.53 -12.87 5.99 -183.62 -1.10 -13.97 16 6 H 0.43 8.71 8.19 -92.71 -0.76 7.95 16 7 C -0.09 -2.78 7.06 40.35 0.28 -2.49 16 8 C 0.59 20.86 7.12 86.45 0.62 21.47 16 9 O -0.56 -22.54 11.83 -4.35 -0.05 -22.59 16 10 N -0.70 -23.30 4.49 -446.50 -2.01 -25.30 16 11 C 0.18 6.18 2.43 44.99 0.11 6.29 16 12 H 0.06 2.39 7.33 -2.39 -0.02 2.37 16 13 C 0.15 5.73 5.80 86.38 0.50 6.23 16 14 N -0.74 -36.54 5.43 -343.45 -1.87 -38.40 16 15 C -0.24 -13.21 9.99 84.03 0.84 -12.37 16 16 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 17 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 18 N -0.97 -58.72 13.06 21.65 0.28 -58.44 16 19 Si 0.97 45.22 29.55 68.60 2.03 47.25 16 20 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 21 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 22 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 23 C -0.17 -4.57 5.36 -10.80 -0.06 -4.63 16 24 C -0.16 -4.12 10.18 30.62 0.31 -3.81 16 25 C -0.18 -4.99 9.74 30.62 0.30 -4.69 16 26 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 27 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.05 1.77 6.49 -2.39 -0.02 1.76 16 29 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 30 H 0.21 2.26 8.06 -2.91 -0.02 2.24 16 31 H 0.40 12.25 7.73 -92.70 -0.72 11.54 16 32 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.37 20.15 7.33 -92.71 -0.68 19.47 16 35 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 36 H 0.12 2.91 8.11 -2.39 -0.02 2.89 16 37 H 0.08 2.30 8.05 -2.39 -0.02 2.28 16 38 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.09 3.12 5.01 -2.39 -0.01 3.11 16 Total: -1.00 -69.47 332.90 1.39 -68.09 By element: Atomic # 1 Polarization: 49.81 SS G_CDS: -1.08 Total: 48.74 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: 5.18 Total: -5.36 kcal Atomic # 7 Polarization: -131.43 SS G_CDS: -4.69 Total: -136.12 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.05 Total: -22.59 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -69.47 1.39 -68.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569301716.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.555 kcal (2) G-P(sol) polarization free energy of solvation -69.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds