Wall clock time and date at job start Mon Mar 30 2020 01:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34490 * 125.57031 * 2 1 4 4 C 1.46689 * 106.33559 * 179.75816 * 3 2 1 5 5 C 1.47257 * 126.94424 * 180.29817 * 4 3 2 6 6 O 1.21625 * 119.99777 * 175.12751 * 5 4 3 7 7 N 1.34775 * 120.00223 * 355.12006 * 5 4 3 8 8 C 1.46495 * 120.00129 * 184.94827 * 7 5 4 9 9 C 1.53000 * 109.47263 * 184.99000 * 8 7 5 10 10 N 1.46494 * 115.55330 * 275.89923 * 9 8 7 11 11 C 1.36942 * 120.00107 * 294.73512 * 10 9 8 12 12 H 1.07998 * 119.99431 * 4.64995 * 11 10 9 13 13 C 1.38804 * 120.00135 * 184.65129 * 11 10 9 14 14 N 1.31620 * 120.00397 * 5.08404 * 13 11 10 15 15 Si 1.86806 * 120.00048 * 185.08695 * 13 11 10 16 16 H 1.48497 * 109.46852 * 94.99404 * 15 13 11 17 17 H 1.48496 * 109.47396 * 214.99109 * 15 13 11 18 18 H 1.48494 * 109.46831 * 334.99759 * 15 13 11 19 19 C 1.53002 * 117.49569 * 130.22410 * 9 8 7 20 20 C 1.53001 * 117.49735 * 61.56810 * 9 8 7 21 21 C 1.36771 * 106.11191 * 0.39089 * 4 3 2 22 22 C 1.50699 * 125.80469 * 179.86861 * 21 4 3 23 23 N 1.34665 * 108.39836 * 359.60627 * 21 4 3 24 24 H 0.96999 * 124.85419 * 180.26614 * 23 21 4 25 25 H 1.08993 * 109.46746 * 270.00073 * 1 2 3 26 26 H 1.08998 * 109.47215 * 30.00584 * 1 2 3 27 27 H 1.08994 * 109.46546 * 150.00548 * 1 2 3 28 28 H 1.08006 * 126.83168 * 0.02562 * 3 2 1 29 29 H 0.96996 * 119.99810 * 4.95802 * 7 5 4 30 30 H 1.09002 * 109.47535 * 304.99434 * 8 7 5 31 31 H 1.08998 * 109.46987 * 64.99663 * 8 7 5 32 32 H 0.96997 * 120.00281 * 114.73861 * 10 9 8 33 33 H 0.96994 * 120.00497 * 179.97438 * 14 13 11 34 34 H 1.08997 * 117.50481 * 0.02562 * 19 9 8 35 35 H 1.09000 * 117.49421 * 145.02441 * 19 9 8 36 36 H 1.08994 * 117.50450 * 214.97908 * 20 9 8 37 37 H 1.09009 * 117.49541 * 359.97438 * 20 9 8 38 38 H 1.09003 * 109.47076 * 269.72345 * 22 21 4 39 39 H 1.08993 * 109.47411 * 149.71614 * 22 21 4 40 40 H 1.09001 * 109.46724 * 29.71699 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2894 1.0939 0.0000 4 6 3.6744 0.6107 0.0059 5 6 4.8977 1.4303 0.0143 6 8 5.9866 0.8967 0.1080 7 7 4.8108 2.7718 -0.0822 8 6 6.0289 3.5794 -0.1832 9 6 5.6603 5.0641 -0.1548 10 7 5.2692 5.6428 -1.4425 11 6 6.1826 5.7320 -2.4588 12 1 7.1686 5.3083 -2.3373 13 6 5.8414 6.3669 -3.6450 14 7 4.6770 6.9702 -3.7572 15 14 7.0346 6.3652 -5.0823 16 1 6.7031 5.2453 -5.9994 17 1 6.9293 7.6526 -5.8148 18 1 8.4200 6.1960 -4.5751 19 6 6.4225 5.9626 0.8212 20 6 4.9628 5.5949 1.0992 21 6 3.5999 -0.7550 0.0001 22 6 4.7723 -1.7018 0.0002 23 7 2.3008 -1.1098 0.0001 24 1 1.9758 -2.0237 0.0002 25 1 -0.3632 0.0000 1.0276 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3632 -0.8900 -0.5137 28 1 1.9628 2.1235 0.0004 29 1 3.9417 3.2025 -0.0846 30 1 6.6862 3.3521 0.6561 31 1 6.5405 3.3499 -1.1179 32 1 4.3632 5.9628 -1.5753 33 1 4.4386 7.4143 -4.5860 34 1 7.1867 5.4962 1.4428 35 1 6.6326 6.9844 0.5053 36 1 4.2133 6.3750 0.9662 37 1 4.7662 4.8863 1.9039 38 1 5.0553 -1.9298 -1.0275 39 1 4.4957 -2.6226 0.5136 40 1 5.6139 -1.2378 0.5144 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569419880.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:25 Heat of formation + Delta-G solvation = 34.319449 kcal Electronic energy + Delta-G solvation = -21181.453644 eV Core-core repulsion = 17997.616257 eV Total energy + Delta-G solvation = -3183.837388 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.29435 -38.84012 -37.27621 -33.64503 -32.94584 -32.60656 -31.03643 -29.64637 -29.23548 -26.67184 -24.60143 -23.83881 -22.12512 -21.52280 -20.39132 -19.46123 -18.63093 -17.05541 -16.95810 -15.93199 -15.38849 -15.18401 -15.00146 -14.23898 -13.98814 -13.83941 -13.64966 -13.32650 -13.28118 -13.03579 -12.91510 -12.55337 -12.33863 -12.18670 -11.95962 -11.82177 -11.45402 -10.99004 -10.87904 -10.80545 -10.21594 -10.19358 -9.65393 -9.53656 -9.22416 -8.83546 -8.78236 -8.40666 -7.96575 -7.01379 -5.78623 -3.08381 1.89510 2.39149 3.05035 3.45132 3.51100 3.52398 3.76816 3.93445 4.51202 4.67382 4.73290 4.86150 5.02664 5.20331 5.28375 5.34204 5.35490 5.40404 5.54075 5.57989 5.63887 5.69167 5.73277 5.86588 5.91070 5.99519 6.17600 6.23735 6.40447 6.50932 6.66514 6.76525 6.81148 6.85848 6.96151 7.07415 7.41690 7.74890 8.14100 8.39864 8.80090 9.50710 10.05092 10.40529 11.43333 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016598 B = 0.004320 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.513059 B = 6480.399920 C = 6695.591345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.005 3.995 3 C -0.161 4.161 4 C -0.225 4.225 5 C 0.586 3.414 6 O -0.562 6.562 7 N -0.708 5.708 8 C 0.149 3.851 9 C 0.128 3.872 10 N -0.689 5.689 11 C -0.236 4.236 12 H 0.073 0.927 13 C -0.010 4.010 14 N -0.932 5.932 15 Si 0.907 3.093 16 H -0.290 1.290 17 H -0.292 1.292 18 H -0.280 1.280 19 C -0.187 4.187 20 C -0.186 4.186 21 C 0.099 3.901 22 C -0.094 4.094 23 N -0.552 5.552 24 H 0.411 0.589 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.061 0.939 28 H 0.145 0.855 29 H 0.400 0.600 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.387 0.613 33 H 0.255 0.745 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.892 -15.119 10.450 20.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 C -0.185 4.185 4 C -0.235 4.235 5 C 0.375 3.625 6 O -0.444 6.444 7 N -0.356 5.356 8 C 0.023 3.977 9 C 0.034 3.966 10 N -0.328 5.328 11 C -0.366 4.366 12 H 0.091 0.909 13 C -0.206 4.206 14 N -0.580 5.580 15 Si 0.738 3.262 16 H -0.217 1.217 17 H -0.219 1.219 18 H -0.205 1.205 19 C -0.228 4.228 20 C -0.223 4.223 21 C -0.018 4.018 22 C -0.151 4.151 23 N -0.149 5.149 24 H 0.247 0.753 25 H 0.088 0.912 26 H 0.101 0.899 27 H 0.080 0.920 28 H 0.163 0.837 29 H 0.234 0.766 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.222 0.778 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.040 -15.535 10.336 19.943 hybrid contribution -0.359 0.097 -0.992 1.059 sum -7.398 -15.438 9.345 19.504 Atomic orbital electron populations 1.20310 0.87861 1.03332 1.02531 1.20173 0.93376 0.86012 1.10820 1.21861 0.90956 0.97856 1.07833 1.20218 0.93166 0.92236 1.17882 1.17322 0.87498 0.81846 0.75854 1.90684 1.28932 1.72609 1.52129 1.45692 1.10413 1.05761 1.73776 1.21225 0.85940 0.88812 1.01678 1.20186 1.01859 0.90126 0.84411 1.41780 1.12179 1.71793 1.07075 1.19197 0.94994 1.29838 0.92620 0.90927 1.24733 0.97327 1.00133 0.98431 1.69677 1.21753 1.39981 1.26555 0.86171 0.80347 0.76917 0.82803 1.21735 1.21867 1.20536 1.23369 0.93386 1.01980 1.04050 1.23069 0.96425 1.03603 0.99240 1.20270 0.84721 0.94315 1.02473 1.20573 0.94930 0.96253 1.03392 1.41485 1.05352 1.08567 1.59487 0.75260 0.91156 0.89884 0.91969 0.83698 0.76623 0.92149 0.90739 0.77811 0.93511 0.89962 0.88667 0.89051 0.89460 0.90616 0.92192 0.87766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.41 36.01 0.37 -0.22 16 2 C 0.00 0.05 7.13 -81.86 -0.58 -0.53 16 3 C -0.16 -2.12 10.46 -37.50 -0.39 -2.51 16 4 C -0.23 -3.47 6.29 -103.35 -0.65 -4.12 16 5 C 0.59 10.63 7.80 -12.60 -0.10 10.53 16 6 O -0.56 -11.46 14.76 5.26 0.08 -11.39 16 7 N -0.71 -12.47 5.46 -61.44 -0.34 -12.80 16 8 C 0.15 2.88 5.79 -4.04 -0.02 2.86 16 9 C 0.13 2.54 2.18 -131.82 -0.29 2.26 16 10 N -0.69 -16.88 5.49 -47.24 -0.26 -17.14 16 11 C -0.24 -6.48 9.52 -15.06 -0.14 -6.62 16 12 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 13 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 14 N -0.93 -27.79 13.08 55.49 0.73 -27.06 16 15 Si 0.91 22.57 29.56 -169.99 -5.02 17.54 16 16 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 17 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 C -0.19 -3.37 10.11 -26.69 -0.27 -3.64 16 20 C -0.19 -3.08 10.02 -26.69 -0.27 -3.35 16 21 C 0.10 1.29 7.17 -81.88 -0.59 0.70 16 22 C -0.09 -1.05 9.94 36.01 0.36 -0.69 16 23 N -0.55 -5.54 5.90 -5.42 -0.03 -5.57 16 24 H 0.41 2.67 8.96 -40.82 -0.37 2.30 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.15 1.74 7.71 -52.48 -0.40 1.33 16 29 H 0.40 6.50 7.56 -40.82 -0.31 6.20 16 30 H 0.06 1.12 7.87 -51.93 -0.41 0.71 16 31 H 0.07 1.65 7.72 -51.93 -0.40 1.25 16 32 H 0.39 10.04 8.06 -40.82 -0.33 9.71 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 34 H 0.08 1.32 8.06 -51.93 -0.42 0.90 16 35 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 36 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 37 H 0.09 1.28 8.14 -51.92 -0.42 0.86 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.10 1.40 6.36 -51.93 -0.33 1.07 16 LS Contribution 341.44 15.07 5.15 5.15 Total: -1.00 -32.88 341.44 -8.26 -41.14 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: -5.89 Total: 15.87 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -2.67 Total: -5.74 kcal Atomic # 7 Polarization: -62.67 SS G_CDS: 0.10 Total: -62.57 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.08 Total: -11.39 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.88 -8.26 -41.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569419880.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.457 kcal (2) G-P(sol) polarization free energy of solvation -32.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds