Wall clock time and date at job start Mon Mar 30 2020 01:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34490 * 125.57031 * 2 1 4 4 C 1.46689 * 106.33559 * 179.75816 * 3 2 1 5 5 C 1.47257 * 126.94424 * 180.29817 * 4 3 2 6 6 O 1.21625 * 119.99777 * 175.12751 * 5 4 3 7 7 N 1.34775 * 120.00223 * 355.12006 * 5 4 3 8 8 C 1.46495 * 120.00129 * 184.94827 * 7 5 4 9 9 C 1.53000 * 109.47263 * 184.99000 * 8 7 5 10 10 N 1.46494 * 115.55330 * 275.89923 * 9 8 7 11 11 C 1.36942 * 120.00107 * 294.73512 * 10 9 8 12 12 H 1.07998 * 119.99431 * 4.64995 * 11 10 9 13 13 C 1.38804 * 120.00135 * 184.65129 * 11 10 9 14 14 N 1.31620 * 120.00397 * 5.08404 * 13 11 10 15 15 Si 1.86806 * 120.00048 * 185.08695 * 13 11 10 16 16 H 1.48497 * 109.46852 * 94.99404 * 15 13 11 17 17 H 1.48496 * 109.47396 * 214.99109 * 15 13 11 18 18 H 1.48494 * 109.46831 * 334.99759 * 15 13 11 19 19 C 1.53002 * 117.49569 * 130.22410 * 9 8 7 20 20 C 1.53001 * 117.49735 * 61.56810 * 9 8 7 21 21 C 1.36771 * 106.11191 * 0.39089 * 4 3 2 22 22 C 1.50699 * 125.80469 * 179.86861 * 21 4 3 23 23 N 1.34665 * 108.39836 * 359.60627 * 21 4 3 24 24 H 0.96999 * 124.85419 * 180.26614 * 23 21 4 25 25 H 1.08993 * 109.46746 * 270.00073 * 1 2 3 26 26 H 1.08998 * 109.47215 * 30.00584 * 1 2 3 27 27 H 1.08994 * 109.46546 * 150.00548 * 1 2 3 28 28 H 1.08006 * 126.83168 * 0.02562 * 3 2 1 29 29 H 0.96996 * 119.99810 * 4.95802 * 7 5 4 30 30 H 1.09002 * 109.47535 * 304.99434 * 8 7 5 31 31 H 1.08998 * 109.46987 * 64.99663 * 8 7 5 32 32 H 0.96997 * 120.00281 * 114.73861 * 10 9 8 33 33 H 0.96994 * 120.00497 * 179.97438 * 14 13 11 34 34 H 1.08997 * 117.50481 * 0.02562 * 19 9 8 35 35 H 1.09000 * 117.49421 * 145.02441 * 19 9 8 36 36 H 1.08994 * 117.50450 * 214.97908 * 20 9 8 37 37 H 1.09009 * 117.49541 * 359.97438 * 20 9 8 38 38 H 1.09003 * 109.47076 * 269.72345 * 22 21 4 39 39 H 1.08993 * 109.47411 * 149.71614 * 22 21 4 40 40 H 1.09001 * 109.46724 * 29.71699 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2894 1.0939 0.0000 4 6 3.6744 0.6107 0.0059 5 6 4.8977 1.4303 0.0143 6 8 5.9866 0.8967 0.1080 7 7 4.8108 2.7718 -0.0822 8 6 6.0289 3.5794 -0.1832 9 6 5.6603 5.0641 -0.1548 10 7 5.2692 5.6428 -1.4425 11 6 6.1826 5.7320 -2.4588 12 1 7.1686 5.3083 -2.3373 13 6 5.8414 6.3669 -3.6450 14 7 4.6770 6.9702 -3.7572 15 14 7.0346 6.3652 -5.0823 16 1 6.7031 5.2453 -5.9994 17 1 6.9293 7.6526 -5.8148 18 1 8.4200 6.1960 -4.5751 19 6 6.4225 5.9626 0.8212 20 6 4.9628 5.5949 1.0992 21 6 3.5999 -0.7550 0.0001 22 6 4.7723 -1.7018 0.0002 23 7 2.3008 -1.1098 0.0001 24 1 1.9758 -2.0237 0.0002 25 1 -0.3632 0.0000 1.0276 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3632 -0.8900 -0.5137 28 1 1.9628 2.1235 0.0004 29 1 3.9417 3.2025 -0.0846 30 1 6.6862 3.3521 0.6561 31 1 6.5405 3.3499 -1.1179 32 1 4.3632 5.9628 -1.5753 33 1 4.4386 7.4143 -4.5860 34 1 7.1867 5.4962 1.4428 35 1 6.6326 6.9844 0.5053 36 1 4.2133 6.3750 0.9662 37 1 4.7662 4.8863 1.9039 38 1 5.0553 -1.9298 -1.0275 39 1 4.4957 -2.6226 0.5136 40 1 5.6139 -1.2378 0.5144 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569419880.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:25 Heat of formation + Delta-G solvation = 11.374554 kcal Electronic energy + Delta-G solvation = -21182.448610 eV Core-core repulsion = 17997.616257 eV Total energy + Delta-G solvation = -3184.832353 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.25181 -40.26741 -38.82813 -35.27761 -34.75452 -33.48105 -32.06383 -31.64325 -29.99928 -28.09150 -25.95998 -25.55283 -23.43714 -22.81076 -21.32517 -20.91321 -20.09104 -19.11803 -17.96791 -17.38221 -16.73631 -16.50426 -16.27942 -15.95601 -15.38819 -15.27964 -14.95633 -14.71074 -14.30815 -14.11309 -14.01431 -13.63081 -13.50305 -13.42633 -13.02786 -12.98239 -12.88908 -12.79130 -12.36771 -12.28833 -12.18673 -11.97316 -11.57449 -11.00426 -10.97048 -10.53686 -10.04482 -9.67576 -9.02956 -8.92673 -7.95337 -5.23877 0.77708 1.45731 1.45977 1.47390 1.55707 2.12168 2.47890 2.54495 2.63528 3.14216 3.38866 3.67700 3.85629 3.88515 4.01187 4.19927 4.25036 4.26950 4.33439 4.52758 4.66352 4.72629 4.80616 4.83164 4.84872 4.92363 4.96286 5.04650 5.10339 5.17661 5.19780 5.35886 5.40005 5.55710 5.61311 5.83211 6.01856 6.27724 6.64758 6.78438 7.33332 7.41352 8.06606 8.31014 9.27157 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016598 B = 0.004320 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.513059 B = 6480.399920 C = 6695.591345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.020 3.980 3 C -0.188 4.188 4 C -0.266 4.266 5 C 0.580 3.420 6 O -0.594 6.594 7 N -0.704 5.704 8 C 0.162 3.838 9 C 0.100 3.900 10 N -0.698 5.698 11 C -0.231 4.231 12 H 0.069 0.931 13 C -0.068 4.068 14 N -0.965 5.965 15 Si 0.965 3.035 16 H -0.292 1.292 17 H -0.293 1.293 18 H -0.271 1.271 19 C -0.182 4.182 20 C -0.153 4.153 21 C 0.101 3.899 22 C -0.091 4.091 23 N -0.535 5.535 24 H 0.431 0.569 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.148 0.852 29 H 0.406 0.594 30 H 0.070 0.930 31 H 0.038 0.962 32 H 0.377 0.623 33 H 0.251 0.749 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.115 0.885 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.088 -16.762 11.585 22.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.090 4.090 3 C -0.212 4.212 4 C -0.276 4.276 5 C 0.371 3.629 6 O -0.478 6.478 7 N -0.353 5.353 8 C 0.036 3.964 9 C 0.008 3.992 10 N -0.336 5.336 11 C -0.363 4.363 12 H 0.087 0.913 13 C -0.261 4.261 14 N -0.615 5.615 15 Si 0.794 3.206 16 H -0.220 1.220 17 H -0.220 1.220 18 H -0.196 1.196 19 C -0.223 4.223 20 C -0.191 4.191 21 C -0.018 4.018 22 C -0.149 4.149 23 N -0.133 5.133 24 H 0.271 0.729 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.101 0.899 28 H 0.166 0.834 29 H 0.241 0.759 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.210 0.790 33 H 0.060 0.940 34 H 0.124 0.876 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.133 0.867 38 H 0.096 0.904 39 H 0.114 0.886 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.245 -17.211 11.514 22.288 hybrid contribution -0.022 0.517 -1.258 1.360 sum -8.267 -16.695 10.256 21.266 Atomic orbital electron populations 1.20437 0.84948 1.04523 1.03933 1.20686 0.94969 0.85308 1.07997 1.22011 0.90365 0.99041 1.09783 1.20208 0.92994 0.93342 1.21078 1.17817 0.88207 0.81926 0.74988 1.90653 1.30340 1.73074 1.53711 1.45634 1.10097 1.05789 1.73808 1.20931 0.86583 0.88729 1.00131 1.20352 1.05053 0.90142 0.83693 1.41809 1.11248 1.72110 1.08471 1.19447 0.95181 1.28229 0.93421 0.91268 1.25423 0.98987 1.00857 1.00793 1.69804 1.23387 1.41477 1.26840 0.85248 0.78975 0.76450 0.79904 1.21977 1.21973 1.19563 1.23375 0.95130 1.00639 1.03109 1.23125 0.95462 1.03138 0.97359 1.20461 0.86245 0.93813 1.01289 1.20552 0.93535 0.97157 1.03623 1.41471 1.04233 1.09657 1.57910 0.72880 0.89535 0.89626 0.89879 0.83407 0.75906 0.91172 0.94391 0.78987 0.94025 0.87578 0.90249 0.88888 0.86700 0.90431 0.88591 0.90355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 10.41 71.24 0.74 -0.15 16 2 C 0.02 0.38 7.13 40.98 0.29 0.67 16 3 C -0.19 -4.80 10.46 23.62 0.25 -4.55 16 4 C -0.27 -8.18 6.29 -19.04 -0.12 -8.30 16 5 C 0.58 21.48 7.80 86.61 0.68 22.15 16 6 O -0.59 -24.97 14.76 -4.11 -0.06 -25.03 16 7 N -0.70 -25.19 5.46 -466.55 -2.55 -27.74 16 8 C 0.16 6.36 5.79 86.38 0.50 6.86 16 9 C 0.10 3.95 2.18 3.61 0.01 3.96 16 10 N -0.70 -34.79 5.49 -303.36 -1.66 -36.46 16 11 C -0.23 -12.93 9.52 84.03 0.80 -12.12 16 12 H 0.07 3.84 7.81 -2.91 -0.02 3.82 16 13 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 14 N -0.96 -58.67 13.08 21.65 0.28 -58.39 16 15 Si 0.96 47.12 29.56 68.60 2.03 49.15 16 16 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 17 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 18 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 19 C -0.18 -6.34 10.11 30.62 0.31 -6.03 16 20 C -0.15 -4.82 10.02 30.62 0.31 -4.51 16 21 C 0.10 2.49 7.17 41.78 0.30 2.79 16 22 C -0.09 -1.94 9.94 71.24 0.71 -1.23 16 23 N -0.53 -9.28 5.90 -171.06 -1.01 -10.29 16 24 H 0.43 4.01 8.96 -92.71 -0.83 3.18 16 25 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.15 3.49 7.71 -2.91 -0.02 3.47 16 29 H 0.41 13.33 7.56 -92.71 -0.70 12.63 16 30 H 0.07 2.59 7.87 -2.39 -0.02 2.57 16 31 H 0.04 1.75 7.72 -2.39 -0.02 1.73 16 32 H 0.38 19.99 8.06 -92.71 -0.75 19.24 16 33 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 34 H 0.11 3.18 8.06 -2.39 -0.02 3.16 16 35 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 36 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 37 H 0.11 3.02 8.14 -2.38 -0.02 3.00 16 38 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.08 2.12 6.36 -2.39 -0.02 2.11 16 Total: -1.00 -72.77 341.44 1.06 -71.71 By element: Atomic # 1 Polarization: 42.17 SS G_CDS: -1.20 Total: 40.97 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: 5.24 Total: -3.92 kcal Atomic # 7 Polarization: -127.94 SS G_CDS: -4.94 Total: -132.88 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.06 Total: -25.03 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -72.77 1.06 -71.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569419880.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.084 kcal (2) G-P(sol) polarization free energy of solvation -72.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds