Wall clock time and date at job start Mon Mar 30 2020 01:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 110.78167 * 2 1 4 4 N 1.46503 * 109.47131 * 298.21420 * 3 2 1 5 5 C 1.36932 * 120.00217 * 180.02562 * 4 3 2 6 6 H 1.08005 * 119.99922 * 359.97438 * 5 4 3 7 7 C 1.38806 * 120.00366 * 180.02562 * 5 4 3 8 8 N 1.31626 * 119.99856 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00423 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47054 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47355 * 119.99576 * 9 7 5 12 12 H 1.48499 * 109.46967 * 239.99702 * 9 7 5 13 13 C 1.55450 * 110.70582 * 123.21310 * 2 1 3 14 14 C 1.54909 * 101.45064 * 82.89036 * 13 2 1 15 15 N 1.47425 * 104.93090 * 36.99969 * 14 13 2 16 16 C 1.34780 * 125.64856 * 155.83380 * 15 14 13 17 17 O 1.21632 * 119.99475 * 354.98993 * 16 15 14 18 18 C 1.47259 * 120.00027 * 174.98108 * 16 15 14 19 19 C 1.46682 * 126.94025 * 5.30850 * 18 16 15 20 20 C 1.34494 * 106.32966 * 179.88605 * 19 18 16 21 21 N 1.36445 * 108.85790 * 0.37688 * 20 19 18 22 22 H 0.96999 * 124.85119 * 179.77434 * 21 20 19 23 23 C 1.34661 * 110.29820 * 359.74781 * 21 20 19 24 24 C 1.47020 * 108.70391 * 335.82064 * 15 14 13 25 25 H 1.09003 * 109.47419 * 181.78499 * 1 2 3 26 26 H 1.08998 * 109.47145 * 301.78862 * 1 2 3 27 27 H 1.09003 * 109.47156 * 61.78227 * 1 2 3 28 28 H 1.08999 * 109.47249 * 58.21517 * 3 2 1 29 29 H 1.08999 * 109.47160 * 178.21700 * 3 2 1 30 30 H 0.97007 * 119.99845 * 359.97438 * 4 3 2 31 31 H 0.96995 * 119.99812 * 179.97438 * 8 7 5 32 32 H 1.08991 * 111.11842 * 324.83286 * 13 2 1 33 33 H 1.09001 * 111.00932 * 200.89411 * 13 2 1 34 34 H 1.09003 * 110.36624 * 278.10878 * 14 13 2 35 35 H 1.08997 * 110.36847 * 155.89872 * 14 13 2 36 36 H 1.07999 * 126.83773 * 0.02562 * 19 18 16 37 37 H 1.08003 * 125.56987 * 180.16191 * 20 19 18 38 38 H 1.07995 * 125.80500 * 179.97438 * 23 21 20 39 39 H 1.09003 * 109.88135 * 120.47137 * 24 15 14 40 40 H 1.08994 * 109.88360 * 241.48352 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0728 1.4304 0.0000 4 7 1.6355 2.1187 -1.2171 5 6 2.0030 3.4192 -1.4379 6 1 2.6149 3.9377 -0.7145 7 6 1.5883 4.0715 -2.5908 8 7 0.8422 3.4398 -3.4722 9 14 2.0890 5.8458 -2.8917 10 1 2.9209 6.3243 -1.7585 11 1 2.8706 5.9329 -4.1513 12 1 0.8732 6.6910 -3.0041 13 6 2.0796 -0.7965 1.2165 14 6 2.0125 -2.2509 0.6876 15 7 2.3714 -2.1532 -0.7390 16 6 2.8851 -3.1478 -1.4897 17 8 3.1744 -4.2111 -0.9747 18 6 3.0960 -2.9471 -2.9332 19 6 2.9051 -1.7037 -3.6875 20 6 3.2159 -1.9852 -4.9654 21 7 3.5722 -3.2993 -5.0535 22 1 3.8373 -3.7481 -5.8715 23 6 3.5038 -3.8840 -3.8424 24 6 2.0759 -0.7912 -1.2073 25 1 -0.3634 -1.0272 0.0320 26 1 -0.3633 0.5413 0.8735 27 1 -0.3633 0.4859 -0.9056 28 1 1.6956 1.9622 0.8735 29 1 3.1620 1.4057 0.0320 30 1 1.0863 1.6529 -1.8670 31 1 0.5521 3.8957 -4.2776 32 1 1.4410 -0.6687 2.0905 33 1 3.1070 -0.5090 1.4400 34 1 1.0038 -2.6488 0.7985 35 1 2.7281 -2.8804 1.2166 36 1 2.5817 -0.7511 -3.2946 37 1 3.1848 -1.2861 -5.7882 38 1 3.7317 -4.9172 -3.6259 39 1 2.9868 -0.3208 -1.5775 40 1 1.3282 -0.8257 -1.9996 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569669871.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:30 Heat of formation + Delta-G solvation = 27.814310 kcal Electronic energy + Delta-G solvation = -21930.700445 eV Core-core repulsion = 18746.580973 eV Total energy + Delta-G solvation = -3184.119472 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.04454 -39.62394 -37.63071 -34.63312 -32.64944 -31.37736 -30.17685 -29.04462 -28.86701 -26.48010 -25.49417 -23.93352 -22.42618 -20.99344 -20.69823 -19.01788 -18.74041 -18.02332 -17.07378 -15.92541 -15.79317 -14.94169 -14.66877 -14.29171 -13.96386 -13.78656 -13.62669 -13.46241 -13.17462 -13.02253 -12.77982 -12.38715 -11.99948 -11.89164 -11.76418 -11.63793 -11.52407 -11.01087 -10.84762 -10.45613 -10.32503 -10.23982 -9.94529 -9.64962 -9.58459 -8.88107 -8.73274 -8.43322 -8.13813 -6.91663 -5.77192 -3.05062 1.90202 2.60628 3.14739 3.42828 3.48388 3.49416 3.50868 3.78200 4.56855 4.71632 4.82204 5.05678 5.12502 5.16932 5.35819 5.48254 5.49833 5.58827 5.59188 5.70890 5.87681 5.97382 6.02570 6.04987 6.07537 6.19577 6.21582 6.25067 6.40070 6.48336 6.61489 6.66667 6.77853 6.84932 6.87490 7.04797 7.48516 7.71270 7.85638 8.41812 8.53134 9.53685 10.10544 10.45837 11.45615 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015739 B = 0.005600 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.564044 B = 4998.618401 C = 6427.979745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.080 4.080 3 C 0.168 3.832 4 N -0.730 5.730 5 C -0.236 4.236 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.933 5.933 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.123 4.123 14 C 0.109 3.891 15 N -0.611 5.611 16 C 0.607 3.393 17 O -0.567 6.567 18 C -0.232 4.232 19 C -0.168 4.168 20 C -0.021 4.021 21 N -0.556 5.556 22 H 0.415 0.585 23 C 0.067 3.933 24 C 0.114 3.886 25 H 0.047 0.953 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.024 0.976 29 H 0.022 0.978 30 H 0.384 0.616 31 H 0.254 0.746 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.163 0.837 37 H 0.170 0.830 38 H 0.174 0.826 39 H 0.079 0.921 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.761 -13.014 0.778 13.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.081 4.081 3 C 0.040 3.960 4 N -0.375 5.375 5 C -0.367 4.367 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.582 5.582 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 C -0.162 4.162 14 C -0.013 4.013 15 N -0.344 5.344 16 C 0.398 3.602 17 O -0.448 6.448 18 C -0.243 4.243 19 C -0.191 4.191 20 C -0.148 4.148 21 N -0.150 5.150 22 H 0.251 0.749 23 C -0.069 4.069 24 C -0.009 4.009 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.042 0.958 29 H 0.039 0.961 30 H 0.218 0.782 31 H 0.064 0.936 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.180 0.820 37 H 0.188 0.812 38 H 0.191 0.809 39 H 0.097 0.903 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.043 -13.478 0.903 13.847 hybrid contribution 0.140 0.831 -0.915 1.244 sum 3.184 -12.647 -0.013 13.042 Atomic orbital electron populations 1.21749 0.93392 1.00666 1.03085 1.21908 0.96391 0.96103 0.93662 1.20653 0.96132 0.88178 0.91038 1.42368 1.62556 1.11892 1.20648 1.19264 1.25850 0.88593 1.03044 0.91200 1.24694 1.00645 0.98215 0.97312 1.69659 1.40659 1.36309 1.11530 0.86154 0.77596 0.85077 0.77592 1.20626 1.21965 1.21968 1.22918 1.02075 0.93511 0.97679 1.22165 1.00224 0.97539 0.81406 1.48257 1.63027 1.12125 1.10949 1.17034 0.75960 0.82144 0.85019 1.90724 1.53565 1.26448 1.74085 1.20310 1.15693 0.95424 0.92847 1.22839 1.05177 0.98563 0.92533 1.21927 1.08011 0.85269 0.99600 1.41657 1.53814 1.10164 1.09393 0.74917 1.21715 1.02678 0.98614 0.83917 1.22458 1.00981 0.80535 0.96891 0.93438 0.92480 0.91242 0.95811 0.96059 0.78154 0.93639 0.89885 0.90499 0.91751 0.90765 0.82000 0.81229 0.80925 0.90257 0.90711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 8.26 37.15 0.31 -1.68 16 2 C -0.08 -1.24 0.61 -152.52 -0.09 -1.33 16 3 C 0.17 3.20 5.07 -4.04 -0.02 3.18 16 4 N -0.73 -17.27 5.15 -59.91 -0.31 -17.58 16 5 C -0.24 -6.34 9.99 -15.06 -0.15 -6.49 16 6 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -26.97 13.06 55.49 0.72 -26.25 16 9 Si 0.90 21.87 29.55 -169.99 -5.02 16.85 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 13 C -0.12 -1.60 6.04 -24.42 -0.15 -1.75 16 14 C 0.11 1.52 6.60 -2.53 -0.02 1.50 16 15 N -0.61 -9.80 3.33 -171.84 -0.57 -10.37 16 16 C 0.61 10.59 7.83 -12.59 -0.10 10.49 16 17 O -0.57 -11.11 17.15 5.25 0.09 -11.02 16 18 C -0.23 -3.63 6.22 -103.35 -0.64 -4.27 16 19 C -0.17 -2.54 9.40 -37.50 -0.35 -2.90 16 20 C -0.02 -0.26 11.89 -16.82 -0.20 -0.46 16 21 N -0.56 -5.61 5.90 -12.84 -0.08 -5.69 16 22 H 0.41 2.54 8.96 -40.82 -0.37 2.17 16 23 C 0.07 0.84 11.70 -16.84 -0.20 0.64 16 24 C 0.11 1.84 3.60 -3.06 -0.01 1.83 16 25 H 0.05 0.65 7.44 -51.93 -0.39 0.26 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.07 1.20 7.13 -51.93 -0.37 0.83 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.02 0.42 8.13 -51.93 -0.42 0.00 16 30 H 0.38 9.44 6.38 -40.82 -0.26 9.18 16 31 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.08 0.92 8.05 -51.93 -0.42 0.50 16 33 H 0.08 1.00 8.04 -51.93 -0.42 0.58 16 34 H 0.06 0.84 7.71 -51.93 -0.40 0.44 16 35 H 0.07 1.03 7.99 -51.93 -0.41 0.62 16 36 H 0.16 2.67 4.82 -52.49 -0.25 2.42 16 37 H 0.17 1.72 8.06 -52.48 -0.42 1.30 16 38 H 0.17 1.80 8.06 -52.49 -0.42 1.37 16 39 H 0.08 1.40 6.68 -51.93 -0.35 1.06 16 40 H 0.07 1.26 6.56 -51.93 -0.34 0.92 16 LS Contribution 324.63 15.07 4.89 4.89 Total: -1.00 -32.59 324.63 -7.63 -40.22 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -5.63 Total: 10.63 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -1.72 Total: -1.69 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: -0.23 Total: -59.88 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.02 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.59 -7.63 -40.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569669871.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.036 kcal (2) G-P(sol) polarization free energy of solvation -32.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds