Wall clock time and date at job start Mon Mar 30 2020 02:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34488 * 126.83528 * 2 1 4 4 N 1.36443 * 108.85708 * 180.26188 * 3 2 1 5 5 H 0.97002 * 124.85312 * 179.68634 * 4 3 2 6 6 C 1.34658 * 110.29854 * 359.71318 * 4 3 2 7 7 C 1.36768 * 108.39481 * 359.97438 * 6 4 3 8 8 C 1.47261 * 126.94260 * 180.02562 * 7 6 4 9 9 O 1.21628 * 120.00482 * 180.02562 * 8 7 6 10 10 N 1.34779 * 119.99833 * 0.02562 * 8 7 6 11 11 C 1.46502 * 119.99800 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.46961 * 185.25589 * 11 10 8 13 13 N 1.46499 * 112.84814 * 48.95722 * 12 11 10 14 14 C 1.36943 * 120.00272 * 67.56116 * 13 12 11 15 15 H 1.08002 * 119.99455 * 358.04752 * 14 13 12 16 16 C 1.38809 * 120.00152 * 178.04779 * 14 13 12 17 17 N 1.31623 * 119.99765 * 180.02562 * 16 14 13 18 18 Si 1.86792 * 120.00128 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47330 * 90.00033 * 18 16 14 20 20 H 1.48501 * 109.47487 * 210.00115 * 18 16 14 21 21 H 1.48500 * 109.47100 * 330.00220 * 18 16 14 22 22 C 1.53781 * 113.61413 * 180.15100 * 12 11 10 23 23 C 1.53778 * 87.07914 * 140.06815 * 22 12 11 24 24 C 1.53774 * 113.69234 * 277.68722 * 12 11 10 25 25 H 1.09000 * 109.47561 * 270.20810 * 1 2 3 26 26 H 1.09004 * 109.47257 * 30.20347 * 1 2 3 27 27 H 1.09001 * 109.47313 * 150.20276 * 1 2 3 28 28 H 1.08001 * 125.56676 * 359.97272 * 3 2 1 29 29 H 1.07995 * 125.80623 * 180.02562 * 6 4 3 30 30 H 0.96992 * 120.00423 * 0.02562 * 10 8 7 31 31 H 1.08999 * 109.47176 * 65.25706 * 11 10 8 32 32 H 1.08996 * 109.47201 * 305.25509 * 11 10 8 33 33 H 0.96995 * 120.00287 * 247.56415 * 13 12 11 34 34 H 0.97002 * 119.99522 * 179.97438 * 17 16 14 35 35 H 1.08996 * 113.61701 * 25.52025 * 22 12 11 36 36 H 1.09005 * 113.69455 * 254.62807 * 22 12 11 37 37 H 1.09001 * 113.61375 * 89.11774 * 23 22 12 38 38 H 1.09000 * 113.61461 * 220.01780 * 23 22 12 39 39 H 1.09001 * 113.61242 * 105.45694 * 24 12 11 40 40 H 1.08997 * 113.61635 * 334.55552 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6110 0.6553 -0.0059 5 1 4.3840 1.2413 -0.0115 6 6 3.6656 -0.6902 -0.0035 7 6 2.3863 -1.1740 0.0047 8 6 1.9749 -2.5879 0.0105 9 8 0.7936 -2.8776 0.0172 10 7 2.9073 -3.5611 0.0083 11 6 2.4979 -4.9678 0.0134 12 6 3.7353 -5.8585 0.1417 13 7 4.6267 -5.4410 1.2267 14 6 4.2209 -5.5573 2.5295 15 1 3.2318 -5.9272 2.7559 16 6 5.0808 -5.1997 3.5588 17 7 4.6909 -5.3119 4.8109 18 14 6.7917 -4.5606 3.1671 19 1 6.7476 -3.0831 3.0244 20 1 7.7200 -4.9241 4.2677 21 1 7.2678 -5.1664 1.8976 22 6 3.4133 -7.3622 0.1531 23 6 4.6605 -7.5558 -0.7254 24 6 4.4608 -6.1041 -1.1917 25 1 -0.3634 0.0037 1.0276 26 1 -0.3634 0.8882 -0.5170 27 1 -0.3634 -0.8918 -0.5107 28 1 1.9867 2.1059 -0.0004 29 1 4.5663 -1.2860 -0.0066 30 1 3.8493 -3.3303 0.0033 31 1 1.9790 -5.1986 -0.9169 32 1 1.8308 -5.1490 0.8561 33 1 5.5044 -5.0822 1.0224 34 1 5.2919 -5.0623 5.5302 35 1 2.4804 -7.6129 -0.3517 36 1 3.4978 -7.8208 1.1384 37 1 5.5767 -7.7092 -0.1552 38 1 4.5261 -8.2915 -1.5183 39 1 5.3915 -5.5457 -1.2916 40 1 3.8143 -6.0108 -2.0642 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570126154.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:44 Heat of formation + Delta-G solvation = 40.873895 kcal Electronic energy + Delta-G solvation = -21829.970747 eV Core-core repulsion = 18646.417582 eV Total energy + Delta-G solvation = -3183.553165 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.02596 -39.26206 -38.02077 -33.82986 -33.21831 -32.27079 -30.61601 -29.92120 -27.08998 -26.41124 -25.30625 -23.72270 -22.63180 -21.31886 -19.64620 -19.10656 -18.31293 -18.05826 -17.62901 -16.00210 -15.47571 -14.90370 -14.63113 -14.29938 -14.25149 -13.83077 -13.79508 -13.37420 -12.96330 -12.78446 -12.63851 -12.51463 -12.23758 -12.17447 -11.77853 -11.42083 -11.25308 -11.19625 -10.90159 -10.43892 -10.21046 -10.17327 -9.66312 -9.51557 -9.30962 -8.91234 -8.57379 -8.24601 -8.15538 -7.34889 -5.79112 -3.16524 2.00466 2.52899 3.27278 3.28822 3.30312 3.38991 3.86632 4.06028 4.53081 4.95732 5.02094 5.10694 5.12202 5.19810 5.27753 5.37659 5.45097 5.52818 5.67696 5.77323 5.95982 6.02264 6.03701 6.08205 6.14898 6.23872 6.25319 6.31275 6.42160 6.56893 6.70872 6.84677 6.93032 6.93688 7.00925 7.17240 7.49684 7.97421 8.22447 8.39462 8.92128 9.15798 9.87151 10.05045 11.39065 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014644 B = 0.006166 C = 0.005109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.595623 B = 4539.839109 C = 5479.079722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.111 4.111 3 C -0.032 4.032 4 N -0.552 5.552 5 H 0.415 0.585 6 C 0.046 3.954 7 C -0.218 4.218 8 C 0.584 3.416 9 O -0.556 6.556 10 N -0.703 5.703 11 C 0.126 3.874 12 C 0.178 3.822 13 N -0.725 5.725 14 C -0.235 4.235 15 H 0.092 0.908 16 C 0.007 3.993 17 N -0.930 5.930 18 Si 0.879 3.121 19 H -0.286 1.286 20 H -0.292 1.292 21 H -0.277 1.277 22 C -0.147 4.147 23 C -0.131 4.131 24 C -0.146 4.146 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.166 0.834 29 H 0.170 0.830 30 H 0.395 0.605 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.362 0.638 34 H 0.259 0.741 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.031 9.183 -13.782 16.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.118 4.118 3 C -0.160 4.160 4 N -0.147 5.147 5 H 0.251 0.749 6 C -0.090 4.090 7 C -0.228 4.228 8 C 0.372 3.628 9 O -0.436 6.436 10 N -0.352 5.352 11 C -0.001 4.001 12 C 0.085 3.915 13 N -0.367 5.367 14 C -0.364 4.364 15 H 0.110 0.890 16 C -0.189 4.189 17 N -0.578 5.578 18 Si 0.710 3.290 19 H -0.213 1.213 20 H -0.218 1.218 21 H -0.203 1.203 22 C -0.187 4.187 23 C -0.168 4.168 24 C -0.184 4.184 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.097 0.903 28 H 0.183 0.817 29 H 0.187 0.813 30 H 0.229 0.771 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.195 0.805 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.897 9.002 -13.536 16.281 hybrid contribution 2.294 0.879 0.099 2.458 sum 1.397 9.881 -13.437 16.737 Atomic orbital electron populations 1.20168 0.89488 1.02239 1.01942 1.20553 0.95587 0.90466 1.05187 1.21503 0.82548 0.99008 1.12919 1.41439 1.08151 1.06670 1.58403 0.74910 1.21954 0.98786 0.83728 1.04569 1.20495 0.92486 0.93247 1.16581 1.17349 0.85494 0.83949 0.75983 1.90694 1.17346 1.83846 1.51680 1.45520 1.09238 1.06104 1.74369 1.21719 0.97768 0.80027 1.00558 1.20779 0.90140 0.92392 0.88162 1.42403 1.15544 1.76533 1.02219 1.18945 1.00359 1.36850 0.80269 0.89016 1.24639 0.97577 1.01586 0.95058 1.69695 1.36142 1.54060 0.97886 0.86636 0.86293 0.78795 0.77266 1.21319 1.21843 1.20330 1.23248 0.96715 0.97833 1.00882 1.22655 0.99429 0.95802 0.98941 1.23231 1.00401 0.97546 0.97184 0.91880 0.92755 0.90304 0.81698 0.81268 0.77131 0.92734 0.91343 0.80459 0.93089 0.90987 0.90195 0.90263 0.92530 0.92047 0.90043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 9.97 36.00 0.36 -0.76 16 2 C -0.11 -1.65 6.35 -102.54 -0.65 -2.30 16 3 C -0.03 -0.37 11.82 -16.83 -0.20 -0.57 16 4 N -0.55 -5.71 5.90 -12.85 -0.08 -5.79 16 5 H 0.41 2.72 8.96 -40.82 -0.37 2.36 16 6 C 0.05 0.60 11.40 -16.84 -0.19 0.40 16 7 C -0.22 -3.59 6.29 -103.35 -0.65 -4.24 16 8 C 0.58 11.26 7.81 -12.59 -0.10 11.16 16 9 O -0.56 -12.30 15.32 5.25 0.08 -12.22 16 10 N -0.70 -12.61 5.37 -61.43 -0.33 -12.94 16 11 C 0.13 2.32 5.06 -4.04 -0.02 2.30 16 12 C 0.18 3.17 0.90 -131.01 -0.12 3.05 16 13 N -0.72 -15.54 4.40 -46.48 -0.20 -15.74 16 14 C -0.23 -6.23 9.71 -15.06 -0.15 -6.38 16 15 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 16 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 17 N -0.93 -28.70 13.97 55.49 0.78 -27.93 16 18 Si 0.88 20.95 27.72 -169.99 -4.71 16.24 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 21 H -0.28 -6.12 6.55 56.52 0.37 -5.75 16 22 C -0.15 -2.49 7.27 -25.92 -0.19 -2.68 16 23 C -0.13 -1.95 7.99 -25.92 -0.21 -2.16 16 24 C -0.15 -2.11 7.37 -25.92 -0.19 -2.30 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 1.25 6.86 -51.93 -0.36 0.89 16 28 H 0.17 1.32 8.06 -52.49 -0.42 0.89 16 29 H 0.17 1.85 7.45 -52.49 -0.39 1.46 16 30 H 0.39 6.48 7.07 -40.82 -0.29 6.19 16 31 H 0.05 0.93 7.95 -51.93 -0.41 0.51 16 32 H 0.07 1.48 8.13 -51.93 -0.42 1.06 16 33 H 0.36 7.57 5.75 -40.82 -0.23 7.33 16 34 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 35 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 36 H 0.08 1.57 7.79 -51.93 -0.40 1.16 16 37 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16 40 H 0.08 1.05 7.97 -51.93 -0.41 0.63 16 LS Contribution 332.01 15.07 5.00 5.00 Total: -1.00 -33.98 332.01 -7.70 -41.67 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -5.83 Total: 16.07 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -2.40 Total: -4.37 kcal Atomic # 7 Polarization: -62.56 SS G_CDS: 0.16 Total: -62.40 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.08 Total: -12.22 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.71 Total: 16.24 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.98 -7.70 -41.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570126154.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.547 kcal (2) G-P(sol) polarization free energy of solvation -33.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds