Wall clock time and date at job start Mon Mar 30 2020 02:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34488 * 126.83528 * 2 1 4 4 N 1.36443 * 108.85708 * 180.26188 * 3 2 1 5 5 H 0.97002 * 124.85312 * 179.68634 * 4 3 2 6 6 C 1.34658 * 110.29854 * 359.71318 * 4 3 2 7 7 C 1.36768 * 108.39481 * 359.97438 * 6 4 3 8 8 C 1.47261 * 126.94260 * 180.02562 * 7 6 4 9 9 O 1.21628 * 120.00482 * 180.02562 * 8 7 6 10 10 N 1.34779 * 119.99833 * 0.02562 * 8 7 6 11 11 C 1.46502 * 119.99800 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.46961 * 185.25589 * 11 10 8 13 13 N 1.46499 * 112.84814 * 48.95722 * 12 11 10 14 14 C 1.36943 * 120.00272 * 67.56116 * 13 12 11 15 15 H 1.08002 * 119.99455 * 358.04752 * 14 13 12 16 16 C 1.38809 * 120.00152 * 178.04779 * 14 13 12 17 17 N 1.31623 * 119.99765 * 180.02562 * 16 14 13 18 18 Si 1.86792 * 120.00128 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47330 * 90.00033 * 18 16 14 20 20 H 1.48501 * 109.47487 * 210.00115 * 18 16 14 21 21 H 1.48500 * 109.47100 * 330.00220 * 18 16 14 22 22 C 1.53781 * 113.61413 * 180.15100 * 12 11 10 23 23 C 1.53778 * 87.07914 * 140.06815 * 22 12 11 24 24 C 1.53774 * 113.69234 * 277.68722 * 12 11 10 25 25 H 1.09000 * 109.47561 * 270.20810 * 1 2 3 26 26 H 1.09004 * 109.47257 * 30.20347 * 1 2 3 27 27 H 1.09001 * 109.47313 * 150.20276 * 1 2 3 28 28 H 1.08001 * 125.56676 * 359.97272 * 3 2 1 29 29 H 1.07995 * 125.80623 * 180.02562 * 6 4 3 30 30 H 0.96992 * 120.00423 * 0.02562 * 10 8 7 31 31 H 1.08999 * 109.47176 * 65.25706 * 11 10 8 32 32 H 1.08996 * 109.47201 * 305.25509 * 11 10 8 33 33 H 0.96995 * 120.00287 * 247.56415 * 13 12 11 34 34 H 0.97002 * 119.99522 * 179.97438 * 17 16 14 35 35 H 1.08996 * 113.61701 * 25.52025 * 22 12 11 36 36 H 1.09005 * 113.69455 * 254.62807 * 22 12 11 37 37 H 1.09001 * 113.61375 * 89.11774 * 23 22 12 38 38 H 1.09000 * 113.61461 * 220.01780 * 23 22 12 39 39 H 1.09001 * 113.61242 * 105.45694 * 24 12 11 40 40 H 1.08997 * 113.61635 * 334.55552 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6110 0.6553 -0.0059 5 1 4.3840 1.2413 -0.0115 6 6 3.6656 -0.6902 -0.0035 7 6 2.3863 -1.1740 0.0047 8 6 1.9749 -2.5879 0.0105 9 8 0.7936 -2.8776 0.0172 10 7 2.9073 -3.5611 0.0083 11 6 2.4979 -4.9678 0.0134 12 6 3.7353 -5.8585 0.1417 13 7 4.6267 -5.4410 1.2267 14 6 4.2209 -5.5573 2.5295 15 1 3.2318 -5.9272 2.7559 16 6 5.0808 -5.1997 3.5588 17 7 4.6909 -5.3119 4.8109 18 14 6.7917 -4.5606 3.1671 19 1 6.7476 -3.0831 3.0244 20 1 7.7200 -4.9241 4.2677 21 1 7.2678 -5.1664 1.8976 22 6 3.4133 -7.3622 0.1531 23 6 4.6605 -7.5558 -0.7254 24 6 4.4608 -6.1041 -1.1917 25 1 -0.3634 0.0037 1.0276 26 1 -0.3634 0.8882 -0.5170 27 1 -0.3634 -0.8918 -0.5107 28 1 1.9867 2.1059 -0.0004 29 1 4.5663 -1.2860 -0.0066 30 1 3.8493 -3.3303 0.0033 31 1 1.9790 -5.1986 -0.9169 32 1 1.8308 -5.1490 0.8561 33 1 5.5044 -5.0822 1.0224 34 1 5.2919 -5.0623 5.5302 35 1 2.4804 -7.6129 -0.3517 36 1 3.4978 -7.8208 1.1384 37 1 5.5767 -7.7092 -0.1552 38 1 4.5261 -8.2915 -1.5183 39 1 5.3915 -5.5457 -1.2916 40 1 3.8143 -6.0108 -2.0642 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570126154.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:44 Heat of formation + Delta-G solvation = 15.851332 kcal Electronic energy + Delta-G solvation = -21831.055807 eV Core-core repulsion = 18646.417582 eV Total energy + Delta-G solvation = -3184.638225 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.04510 -40.68918 -39.47085 -35.37323 -35.11464 -33.30504 -32.54609 -31.14308 -28.50126 -27.41849 -26.67391 -25.54826 -24.00673 -22.67406 -20.81854 -20.34639 -19.85533 -19.46641 -19.15131 -17.29458 -16.97300 -16.35489 -16.22523 -15.92794 -15.60138 -15.06577 -14.87730 -14.73855 -14.62707 -14.26470 -13.96284 -13.80036 -13.56894 -13.24922 -13.18422 -13.08927 -12.95268 -12.52572 -12.28790 -12.09652 -11.78596 -11.65744 -11.53291 -11.02194 -10.88090 -10.69403 -9.96830 -9.46082 -9.29528 -9.15001 -7.96511 -5.31809 0.83970 1.37439 1.43741 1.51192 1.52992 2.34826 2.52061 2.55650 2.69253 3.32400 3.48167 3.75922 3.95283 4.00702 4.05317 4.14320 4.20198 4.32582 4.48799 4.64291 4.75766 4.77813 4.90747 4.92972 4.93217 4.94478 5.00701 5.14142 5.17661 5.32192 5.36249 5.41022 5.58543 5.72700 5.86608 5.87130 5.98792 6.26420 6.71517 6.83296 7.12436 7.48337 7.85013 8.06318 9.25675 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014644 B = 0.006166 C = 0.005109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.595623 B = 4539.839109 C = 5479.079722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.154 4.154 3 C -0.006 4.006 4 N -0.532 5.532 5 H 0.437 0.563 6 C 0.060 3.940 7 C -0.267 4.267 8 C 0.574 3.426 9 O -0.600 6.600 10 N -0.698 5.698 11 C 0.133 3.867 12 C 0.161 3.839 13 N -0.720 5.720 14 C -0.209 4.209 15 H 0.043 0.957 16 C -0.069 4.069 17 N -0.990 5.990 18 Si 0.957 3.043 19 H -0.273 1.273 20 H -0.307 1.307 21 H -0.243 1.243 22 C -0.153 4.153 23 C -0.120 4.120 24 C -0.123 4.123 25 H 0.051 0.949 26 H 0.086 0.914 27 H 0.047 0.953 28 H 0.207 0.793 29 H 0.193 0.807 30 H 0.404 0.596 31 H 0.073 0.927 32 H 0.020 0.980 33 H 0.370 0.630 34 H 0.254 0.746 35 H 0.091 0.909 36 H 0.041 0.959 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.729 11.281 -16.820 20.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.160 4.160 3 C -0.134 4.134 4 N -0.127 5.127 5 H 0.278 0.722 6 C -0.078 4.078 7 C -0.278 4.278 8 C 0.365 3.635 9 O -0.483 6.483 10 N -0.347 5.347 11 C 0.006 3.994 12 C 0.070 3.930 13 N -0.363 5.363 14 C -0.340 4.340 15 H 0.061 0.939 16 C -0.259 4.259 17 N -0.641 5.641 18 Si 0.784 3.216 19 H -0.199 1.199 20 H -0.234 1.234 21 H -0.167 1.167 22 C -0.193 4.193 23 C -0.158 4.158 24 C -0.161 4.161 25 H 0.070 0.930 26 H 0.105 0.895 27 H 0.066 0.934 28 H 0.224 0.776 29 H 0.210 0.790 30 H 0.240 0.760 31 H 0.091 0.909 32 H 0.039 0.961 33 H 0.205 0.795 34 H 0.063 0.937 35 H 0.110 0.890 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.900 11.118 -16.652 20.112 hybrid contribution 1.298 0.219 1.038 1.677 sum 3.198 11.338 -15.613 19.559 Atomic orbital electron populations 1.20086 0.89791 1.02225 1.01249 1.20836 0.96129 0.91242 1.07830 1.22010 0.82167 0.99812 1.09459 1.41487 1.08894 1.06057 1.56309 0.72198 1.22179 0.98130 0.84972 1.02496 1.20501 0.94809 0.92037 1.20420 1.17952 0.85041 0.85496 0.75046 1.90655 1.19113 1.84721 1.53827 1.45464 1.09594 1.05623 1.74040 1.21602 0.97513 0.80856 0.99412 1.21102 0.89992 0.92415 0.89505 1.42223 1.16347 1.76670 1.01054 1.18716 0.98134 1.34377 0.82781 0.93874 1.25525 1.02770 1.03032 0.94606 1.69929 1.38026 1.56771 0.99384 0.85389 0.79649 0.78738 0.77842 1.19863 1.23420 1.16681 1.23307 0.99315 0.96801 0.99872 1.22595 0.97175 0.97187 0.98824 1.23173 1.00875 0.96767 0.95255 0.92979 0.89549 0.93430 0.77639 0.79048 0.76042 0.90939 0.96105 0.79485 0.93709 0.89030 0.94030 0.91527 0.89446 0.90381 0.87418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.13 9.97 71.23 0.71 -1.42 16 2 C -0.15 -4.42 6.35 -18.52 -0.12 -4.53 16 3 C -0.01 -0.12 11.82 83.12 0.98 0.86 16 4 N -0.53 -8.83 5.90 -194.56 -1.15 -9.97 16 5 H 0.44 3.51 8.96 -92.71 -0.83 2.68 16 6 C 0.06 1.41 11.40 83.92 0.96 2.37 16 7 C -0.27 -8.68 6.29 -19.04 -0.12 -8.80 16 8 C 0.57 22.81 7.81 86.61 0.68 23.48 16 9 O -0.60 -28.22 15.32 -4.12 -0.06 -28.29 16 10 N -0.70 -25.11 5.37 -466.52 -2.51 -27.61 16 11 C 0.13 5.00 5.06 86.38 0.44 5.44 16 12 C 0.16 5.61 0.90 4.13 0.00 5.62 16 13 N -0.72 -30.43 4.40 -300.97 -1.32 -31.75 16 14 C -0.21 -11.50 9.71 84.03 0.82 -10.69 16 15 H 0.04 2.75 8.06 -2.91 -0.02 2.73 16 16 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 17 N -0.99 -63.86 13.97 21.65 0.30 -63.56 16 18 Si 0.96 42.97 27.72 68.60 1.90 44.87 16 19 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 20 H -0.31 -14.51 7.11 99.48 0.71 -13.80 16 21 H -0.24 -9.41 6.55 99.48 0.65 -8.76 16 22 C -0.15 -5.14 7.27 31.12 0.23 -4.92 16 23 C -0.12 -3.23 7.99 31.12 0.25 -2.98 16 24 C -0.12 -3.09 7.37 31.12 0.23 -2.86 16 25 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.05 1.60 6.86 -2.39 -0.02 1.58 16 28 H 0.21 2.19 8.06 -2.91 -0.02 2.17 16 29 H 0.19 3.47 7.45 -2.91 -0.02 3.45 16 30 H 0.40 12.67 7.07 -92.71 -0.66 12.02 16 31 H 0.07 2.45 7.95 -2.39 -0.02 2.43 16 32 H 0.02 0.96 8.13 -2.39 -0.02 0.94 16 33 H 0.37 14.46 5.75 -92.71 -0.53 13.93 16 34 H 0.25 15.69 8.31 -92.71 -0.77 14.92 16 35 H 0.09 2.68 8.10 -2.39 -0.02 2.66 16 36 H 0.04 1.69 7.79 -2.38 -0.02 1.68 16 37 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.09 1.85 8.14 -2.39 -0.02 1.84 16 39 H 0.08 1.77 8.10 -2.39 -0.02 1.75 16 40 H 0.11 2.23 7.97 -2.39 -0.02 2.21 16 Total: -1.00 -81.21 332.01 1.68 -79.54 By element: Atomic # 1 Polarization: 39.71 SS G_CDS: -1.00 Total: 38.71 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: 5.52 Total: -1.94 kcal Atomic # 7 Polarization: -128.22 SS G_CDS: -4.68 Total: -132.90 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.06 Total: -28.29 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 1.90 Total: 44.87 kcal Total: -81.21 1.68 -79.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570126154.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.389 kcal (2) G-P(sol) polarization free energy of solvation -81.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds