Wall clock time and date at job start Mon Mar 30 2020 02:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38167 * 120.49834 * 2 1 4 4 N 1.31798 * 120.89666 * 180.02562 * 3 2 1 5 5 C 1.31826 * 122.04489 * 359.97438 * 4 3 2 6 6 C 1.38128 * 120.89912 * 359.97438 * 5 4 3 7 7 C 1.39795 * 120.49825 * 180.02562 * 2 1 3 8 8 C 1.48150 * 120.92374 * 359.95748 * 7 2 1 9 9 O 1.21505 * 119.99866 * 354.06595 * 8 7 2 10 10 N 1.34780 * 119.99583 * 174.06559 * 8 7 2 11 11 C 1.46506 * 119.99524 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.46881 * 180.02562 * 11 10 8 13 13 H 1.09004 * 109.46911 * 65.00139 * 12 11 10 14 14 C 1.52993 * 109.47149 * 185.00156 * 12 11 10 15 15 N 1.46502 * 109.47293 * 305.00194 * 12 11 10 16 16 C 1.46503 * 119.99782 * 300.00313 * 15 12 11 17 17 C 1.36934 * 119.99918 * 119.99892 * 15 12 11 18 18 H 1.07995 * 120.00222 * 322.84750 * 17 15 12 19 19 C 1.38819 * 119.99773 * 142.85021 * 17 15 12 20 20 N 1.31624 * 119.99832 * 160.72441 * 19 17 15 21 21 Si 1.86791 * 120.00061 * 340.72773 * 19 17 15 22 22 H 1.48497 * 109.47684 * 95.31208 * 21 19 17 23 23 H 1.48500 * 109.47117 * 215.31365 * 21 19 17 24 24 H 1.48499 * 109.47174 * 335.31198 * 21 19 17 25 25 H 1.09000 * 109.47013 * 264.44468 * 1 2 3 26 26 H 1.08996 * 109.47061 * 24.44616 * 1 2 3 27 27 H 1.08998 * 109.46926 * 144.45024 * 1 2 3 28 28 H 1.08001 * 119.55136 * 0.02562 * 3 2 1 29 29 H 1.08000 * 119.55112 * 179.97438 * 5 4 3 30 30 H 1.08003 * 120.49461 * 179.97438 * 6 5 4 31 31 H 0.96996 * 120.00171 * 0.02562 * 10 8 7 32 32 H 1.09000 * 109.47311 * 299.99899 * 11 10 8 33 33 H 1.08998 * 109.46694 * 60.00214 * 11 10 8 34 34 H 1.09004 * 109.47228 * 60.00177 * 14 12 11 35 35 H 1.08995 * 109.47628 * 179.97438 * 14 12 11 36 36 H 1.09002 * 109.47213 * 300.00263 * 14 12 11 37 37 H 1.09005 * 109.47156 * 91.07726 * 16 15 12 38 38 H 1.08999 * 109.46810 * 211.07247 * 16 15 12 39 39 H 1.08996 * 109.47027 * 331.07002 * 16 15 12 40 40 H 0.97001 * 119.99763 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1905 0.0000 4 7 3.5262 1.1997 -0.0005 5 6 4.2334 0.0872 -0.0005 6 6 3.6137 -1.1473 0.0005 7 6 2.2165 -1.2045 -0.0005 8 6 1.5078 -2.5055 -0.0002 9 8 0.2982 -2.5384 0.1094 10 7 2.2050 -3.6526 -0.1214 11 6 1.5042 -4.9392 -0.1205 12 6 2.5202 -6.0734 -0.2698 13 1 3.1689 -6.0977 0.6058 14 6 1.7811 -7.4071 -0.3941 15 7 3.3290 -5.8496 -1.4707 16 6 2.6849 -5.7761 -2.7844 17 6 4.6870 -5.7090 -1.3651 18 1 5.1116 -5.1829 -0.5229 19 6 5.5180 -6.2426 -2.3407 20 7 6.7538 -5.8063 -2.4632 21 14 4.8823 -7.5797 -3.4796 22 1 4.3964 -6.9656 -4.7414 23 1 5.9791 -8.5336 -3.7837 24 1 3.7661 -8.3031 -2.8193 25 1 -0.3633 -0.0995 1.0228 26 1 -0.3633 0.9355 -0.4253 27 1 -0.3633 -0.8361 -0.5975 28 1 1.6691 2.1263 0.0004 29 1 5.3120 0.1417 -0.0014 30 1 4.1995 -2.0546 0.0001 31 1 3.1707 -3.6264 -0.2085 32 1 0.9634 -5.0577 0.8184 33 1 0.8000 -4.9699 -0.9519 34 1 1.1324 -7.3828 -1.2698 35 1 2.5048 -8.2151 -0.5010 36 1 1.1793 -7.5737 0.4993 37 1 2.4286 -4.7400 -3.0060 38 1 3.3684 -6.1520 -3.5457 39 1 1.7786 -6.3815 -2.7790 40 1 7.3345 -6.1795 -3.1446 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570708634.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:13 Heat of formation + Delta-G solvation = 25.161832 kcal Electronic energy + Delta-G solvation = -21841.737749 eV Core-core repulsion = 18657.503258 eV Total energy + Delta-G solvation = -3184.234492 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.62708 -38.90810 -37.04560 -34.18341 -33.31514 -32.53005 -31.65751 -30.19988 -27.53835 -26.32074 -26.02236 -24.22058 -23.26948 -22.08352 -20.44657 -19.53360 -17.78664 -17.03697 -16.68165 -15.86153 -15.38042 -15.25256 -15.12653 -15.04106 -14.33320 -13.86726 -13.54114 -13.38702 -13.28983 -12.70243 -12.66937 -12.50923 -12.36459 -12.26956 -12.23847 -11.64900 -11.51325 -11.32410 -10.94463 -10.58088 -10.21136 -10.07944 -10.02539 -9.78747 -9.65645 -9.23527 -8.96018 -8.69129 -8.62641 -6.98626 -6.10931 -3.56206 0.78197 1.08283 3.05564 3.24239 3.39055 3.40193 3.44290 3.87542 4.40690 4.41883 4.71528 4.79366 4.84616 4.87710 5.00393 5.18905 5.32908 5.45151 5.63328 5.68060 5.72361 5.76492 5.86106 5.89698 5.95307 6.05256 6.07710 6.12035 6.27707 6.38927 6.43068 6.59665 6.62196 6.63903 6.70963 6.85744 7.82034 7.89609 7.91153 8.20030 8.41323 8.82806 9.57187 9.97172 11.03811 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019912 B = 0.005326 C = 0.004496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.851628 B = 5255.816282 C = 6225.929378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.082 4.082 3 C 0.086 3.914 4 N -0.470 5.470 5 C 0.086 3.914 6 C -0.128 4.128 7 C -0.091 4.091 8 C 0.552 3.448 9 O -0.542 6.542 10 N -0.698 5.698 11 C 0.108 3.892 12 C 0.155 3.845 13 H 0.079 0.921 14 C -0.162 4.162 15 N -0.605 5.605 16 C 0.112 3.888 17 C -0.277 4.277 18 H 0.080 0.920 19 C 0.037 3.963 20 N -0.900 5.900 21 Si 0.892 3.108 22 H -0.289 1.289 23 H -0.305 1.305 24 H -0.269 1.269 25 H 0.075 0.925 26 H 0.059 0.941 27 H 0.096 0.904 28 H 0.158 0.842 29 H 0.163 0.837 30 H 0.146 0.854 31 H 0.412 0.588 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.049 0.951 35 H 0.060 0.940 36 H 0.048 0.952 37 H 0.015 0.985 38 H 0.040 0.960 39 H 0.033 0.967 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.467 7.477 5.134 13.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.085 4.085 3 C -0.072 4.072 4 N -0.178 5.178 5 C -0.070 4.070 6 C -0.149 4.149 7 C -0.102 4.102 8 C 0.338 3.662 9 O -0.422 6.422 10 N -0.349 5.349 11 C -0.017 4.017 12 C 0.048 3.952 13 H 0.097 0.903 14 C -0.221 4.221 15 N -0.330 5.330 16 C -0.032 4.032 17 C -0.405 4.405 18 H 0.098 0.902 19 C -0.165 4.165 20 N -0.541 5.541 21 Si 0.723 3.277 22 H -0.217 1.217 23 H -0.233 1.233 24 H -0.194 1.194 25 H 0.094 0.906 26 H 0.078 0.922 27 H 0.115 0.885 28 H 0.175 0.825 29 H 0.180 0.820 30 H 0.164 0.836 31 H 0.250 0.750 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.034 0.966 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.685 8.184 5.119 13.674 hybrid contribution -0.042 -1.666 -0.917 1.902 sum -9.728 6.518 4.201 12.440 Atomic orbital electron populations 1.20962 0.89277 1.03295 1.03600 1.21084 0.98268 0.92518 0.96583 1.22670 0.89866 0.97210 0.97444 1.67530 1.08251 1.31953 1.10099 1.22743 1.00669 0.87169 0.96387 1.22523 0.94008 1.00700 0.97629 1.20320 0.93841 0.94039 1.02018 1.18147 0.86894 0.83766 0.77401 1.90675 1.13517 1.87245 1.50757 1.45867 1.12105 1.05302 1.71585 1.21973 0.95779 0.83008 1.00956 1.20773 0.91839 0.90784 0.91847 0.90261 1.22210 1.00407 0.98950 1.00558 1.44143 1.03918 1.84317 1.00607 1.21278 0.95799 0.98032 0.88124 1.18742 0.79493 1.31268 1.11009 0.90214 1.25467 0.94878 0.97447 0.98658 1.69820 1.07425 1.42079 1.34727 0.86739 0.77576 0.82992 0.80363 1.21704 1.23312 1.19427 0.90645 0.92176 0.88549 0.82460 0.82015 0.83621 0.74972 0.91949 0.92037 0.93190 0.92053 0.93257 0.96637 0.94207 0.94824 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 8.87 36.01 0.32 -1.05 16 2 C -0.08 -1.09 5.93 -104.06 -0.62 -1.71 16 3 C 0.09 1.06 10.84 -17.59 -0.19 0.87 16 4 N -0.47 -6.43 10.34 -13.31 -0.14 -6.57 16 5 C 0.09 1.13 11.17 -17.59 -0.20 0.93 16 6 C -0.13 -1.77 9.60 -39.03 -0.37 -2.14 16 7 C -0.09 -1.35 5.91 -104.65 -0.62 -1.97 16 8 C 0.55 9.07 7.74 -12.19 -0.09 8.98 16 9 O -0.54 -9.76 13.51 5.36 0.07 -9.69 16 10 N -0.70 -11.39 5.35 -61.15 -0.33 -11.72 16 11 C 0.11 1.74 4.97 -4.04 -0.02 1.72 16 12 C 0.16 2.70 2.87 -67.93 -0.20 2.51 16 13 H 0.08 1.40 7.89 -51.93 -0.41 0.99 16 14 C -0.16 -2.54 9.17 37.15 0.34 -2.20 16 15 N -0.61 -12.80 1.87 -173.48 -0.32 -13.12 16 16 C 0.11 2.32 8.69 59.85 0.52 2.84 16 17 C -0.28 -6.92 9.60 -15.06 -0.14 -7.07 16 18 H 0.08 2.09 8.06 -52.49 -0.42 1.67 16 19 C 0.04 0.99 5.36 -17.43 -0.09 0.90 16 20 N -0.90 -25.85 13.97 55.49 0.78 -25.07 16 21 Si 0.89 21.50 24.81 -169.99 -4.22 17.29 16 22 H -0.29 -6.90 6.72 56.52 0.38 -6.52 16 23 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 24 H -0.27 -6.31 7.10 56.52 0.40 -5.91 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.06 0.56 8.06 -51.93 -0.42 0.14 16 27 H 0.10 1.37 5.89 -51.93 -0.31 1.06 16 28 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 29 H 0.16 1.73 8.06 -52.49 -0.42 1.31 16 30 H 0.15 1.95 6.58 -52.48 -0.35 1.60 16 31 H 0.41 6.91 6.07 -40.82 -0.25 6.67 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 1.03 7.84 -51.93 -0.41 0.63 16 34 H 0.05 0.77 6.66 -51.93 -0.35 0.43 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.04 0.90 2.91 -51.93 -0.15 0.75 16 39 H 0.03 0.62 6.43 -51.93 -0.33 0.28 16 40 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 323.01 15.07 4.87 4.87 Total: -1.00 -29.64 323.01 -6.16 -35.80 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -5.50 Total: 5.63 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -1.36 Total: 2.59 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: -0.01 Total: -56.48 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.07 Total: -9.69 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.22 Total: 17.29 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.64 -6.16 -35.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570708634.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.958 kcal (2) G-P(sol) polarization free energy of solvation -29.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds