Wall clock time and date at job start Mon Mar 30 2020 02:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38167 * 120.49834 * 2 1 4 4 N 1.31798 * 120.89666 * 180.02562 * 3 2 1 5 5 C 1.31826 * 122.04489 * 359.97438 * 4 3 2 6 6 C 1.38128 * 120.89912 * 359.97438 * 5 4 3 7 7 C 1.39795 * 120.49825 * 180.02562 * 2 1 3 8 8 C 1.48150 * 120.92374 * 359.95748 * 7 2 1 9 9 O 1.21505 * 119.99866 * 354.06595 * 8 7 2 10 10 N 1.34780 * 119.99583 * 174.06559 * 8 7 2 11 11 C 1.46506 * 119.99524 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.46881 * 180.02562 * 11 10 8 13 13 H 1.09004 * 109.46911 * 65.00139 * 12 11 10 14 14 C 1.52993 * 109.47149 * 185.00156 * 12 11 10 15 15 N 1.46502 * 109.47293 * 305.00194 * 12 11 10 16 16 C 1.46503 * 119.99782 * 300.00313 * 15 12 11 17 17 C 1.36934 * 119.99918 * 119.99892 * 15 12 11 18 18 H 1.07995 * 120.00222 * 322.84750 * 17 15 12 19 19 C 1.38819 * 119.99773 * 142.85021 * 17 15 12 20 20 N 1.31624 * 119.99832 * 160.72441 * 19 17 15 21 21 Si 1.86791 * 120.00061 * 340.72773 * 19 17 15 22 22 H 1.48497 * 109.47684 * 95.31208 * 21 19 17 23 23 H 1.48500 * 109.47117 * 215.31365 * 21 19 17 24 24 H 1.48499 * 109.47174 * 335.31198 * 21 19 17 25 25 H 1.09000 * 109.47013 * 264.44468 * 1 2 3 26 26 H 1.08996 * 109.47061 * 24.44616 * 1 2 3 27 27 H 1.08998 * 109.46926 * 144.45024 * 1 2 3 28 28 H 1.08001 * 119.55136 * 0.02562 * 3 2 1 29 29 H 1.08000 * 119.55112 * 179.97438 * 5 4 3 30 30 H 1.08003 * 120.49461 * 179.97438 * 6 5 4 31 31 H 0.96996 * 120.00171 * 0.02562 * 10 8 7 32 32 H 1.09000 * 109.47311 * 299.99899 * 11 10 8 33 33 H 1.08998 * 109.46694 * 60.00214 * 11 10 8 34 34 H 1.09004 * 109.47228 * 60.00177 * 14 12 11 35 35 H 1.08995 * 109.47628 * 179.97438 * 14 12 11 36 36 H 1.09002 * 109.47213 * 300.00263 * 14 12 11 37 37 H 1.09005 * 109.47156 * 91.07726 * 16 15 12 38 38 H 1.08999 * 109.46810 * 211.07247 * 16 15 12 39 39 H 1.08996 * 109.47027 * 331.07002 * 16 15 12 40 40 H 0.97001 * 119.99763 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1905 0.0000 4 7 3.5262 1.1997 -0.0005 5 6 4.2334 0.0872 -0.0005 6 6 3.6137 -1.1473 0.0005 7 6 2.2165 -1.2045 -0.0005 8 6 1.5078 -2.5055 -0.0002 9 8 0.2982 -2.5384 0.1094 10 7 2.2050 -3.6526 -0.1214 11 6 1.5042 -4.9392 -0.1205 12 6 2.5202 -6.0734 -0.2698 13 1 3.1689 -6.0977 0.6058 14 6 1.7811 -7.4071 -0.3941 15 7 3.3290 -5.8496 -1.4707 16 6 2.6849 -5.7761 -2.7844 17 6 4.6870 -5.7090 -1.3651 18 1 5.1116 -5.1829 -0.5229 19 6 5.5180 -6.2426 -2.3407 20 7 6.7538 -5.8063 -2.4632 21 14 4.8823 -7.5797 -3.4796 22 1 4.3964 -6.9656 -4.7414 23 1 5.9791 -8.5336 -3.7837 24 1 3.7661 -8.3031 -2.8193 25 1 -0.3633 -0.0995 1.0228 26 1 -0.3633 0.9355 -0.4253 27 1 -0.3633 -0.8361 -0.5975 28 1 1.6691 2.1263 0.0004 29 1 5.3120 0.1417 -0.0014 30 1 4.1995 -2.0546 0.0001 31 1 3.1707 -3.6264 -0.2085 32 1 0.9634 -5.0577 0.8184 33 1 0.8000 -4.9699 -0.9519 34 1 1.1324 -7.3828 -1.2698 35 1 2.5048 -8.2151 -0.5010 36 1 1.1793 -7.5737 0.4993 37 1 2.4286 -4.7400 -3.0060 38 1 3.3684 -6.1520 -3.5457 39 1 1.7786 -6.3815 -2.7790 40 1 7.3345 -6.1795 -3.1446 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570708634.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:13 Heat of formation + Delta-G solvation = 6.039176 kcal Electronic energy + Delta-G solvation = -21842.566970 eV Core-core repulsion = 18657.503258 eV Total energy + Delta-G solvation = -3185.063712 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.74769 -40.13817 -38.57888 -35.63206 -34.38467 -34.13422 -32.97919 -31.76446 -28.57983 -28.08044 -27.23601 -25.47644 -24.90774 -23.14330 -21.67707 -21.01186 -19.13046 -18.78407 -17.81858 -17.60568 -16.61723 -16.49597 -16.35969 -16.20123 -15.82740 -15.07333 -15.01802 -14.81033 -14.36999 -14.33288 -14.16978 -13.97032 -13.72806 -13.56486 -13.36265 -13.02254 -12.77458 -12.60354 -12.51105 -12.30519 -12.02292 -11.59426 -11.54463 -11.25534 -10.90687 -10.63740 -10.36212 -10.06192 -9.88423 -8.80122 -8.16632 -5.56716 -0.33177 0.06934 1.32120 1.43784 1.53107 1.83624 2.15165 2.43817 2.80605 3.11337 3.29967 3.46972 3.57720 3.76922 3.82874 3.97546 3.98464 4.32817 4.42814 4.48777 4.54165 4.62749 4.69357 4.73674 4.78232 4.80299 4.84010 4.87261 4.94972 5.01821 5.09521 5.24062 5.32034 5.43154 5.55753 5.63833 5.94927 6.19017 6.50479 6.87593 6.96906 7.12030 7.62649 8.05627 9.01559 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019912 B = 0.005326 C = 0.004496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.851628 B = 5255.816282 C = 6225.929378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.087 4.087 3 C 0.091 3.909 4 N -0.482 5.482 5 C 0.083 3.917 6 C -0.135 4.135 7 C -0.111 4.111 8 C 0.551 3.449 9 O -0.560 6.560 10 N -0.701 5.701 11 C 0.116 3.884 12 C 0.155 3.845 13 H 0.075 0.925 14 C -0.155 4.155 15 N -0.612 5.612 16 C 0.111 3.889 17 C -0.250 4.250 18 H 0.060 0.940 19 C -0.019 4.019 20 N -0.947 5.947 21 Si 0.945 3.055 22 H -0.287 1.287 23 H -0.318 1.318 24 H -0.255 1.255 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.192 0.808 29 H 0.182 0.818 30 H 0.143 0.857 31 H 0.409 0.591 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.045 0.955 36 H 0.081 0.919 37 H 0.016 0.984 38 H 0.022 0.978 39 H 0.061 0.939 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.441 7.952 5.526 14.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.090 4.090 3 C -0.067 4.067 4 N -0.191 5.191 5 C -0.073 4.073 6 C -0.155 4.155 7 C -0.121 4.121 8 C 0.338 3.662 9 O -0.440 6.440 10 N -0.351 5.351 11 C -0.009 4.009 12 C 0.049 3.951 13 H 0.093 0.907 14 C -0.215 4.215 15 N -0.337 5.337 16 C -0.033 4.033 17 C -0.380 4.380 18 H 0.078 0.922 19 C -0.216 4.216 20 N -0.591 5.591 21 Si 0.776 3.224 22 H -0.215 1.215 23 H -0.248 1.248 24 H -0.179 1.179 25 H 0.096 0.904 26 H 0.108 0.892 27 H 0.091 0.909 28 H 0.209 0.791 29 H 0.199 0.801 30 H 0.160 0.840 31 H 0.246 0.754 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.100 0.900 37 H 0.034 0.966 38 H 0.040 0.960 39 H 0.079 0.921 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.708 8.645 5.528 15.569 hybrid contribution 0.504 -1.708 -0.948 2.017 sum -11.205 6.938 4.580 13.952 Atomic orbital electron populations 1.20917 0.88235 1.03918 1.03478 1.21336 0.99088 0.92328 0.96203 1.23197 0.89549 0.98127 0.95798 1.67613 1.08988 1.32030 1.10453 1.23063 1.01697 0.86760 0.95772 1.22533 0.93764 1.01051 0.98174 1.20367 0.94329 0.93918 1.03534 1.18384 0.86737 0.84249 0.76815 1.90666 1.14169 1.87580 1.51633 1.45922 1.11906 1.05632 1.71673 1.21889 0.95105 0.82256 1.01662 1.20893 0.91820 0.92489 0.89917 0.90651 1.22120 1.00164 0.96723 1.02452 1.44203 1.02867 1.84538 1.02109 1.21290 0.96277 0.98538 0.87180 1.18727 0.81261 1.28768 1.09253 0.92233 1.26008 0.95141 0.99606 1.00836 1.69937 1.08910 1.43946 1.36309 0.85868 0.76831 0.80633 0.79058 1.21506 1.24770 1.17925 0.90432 0.89156 0.90858 0.79108 0.80132 0.83952 0.75398 0.90292 0.92355 0.92656 0.93586 0.90031 0.96608 0.96016 0.92079 0.93088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.39 8.87 71.24 0.63 -1.76 16 2 C -0.09 -2.18 5.93 -19.50 -0.12 -2.30 16 3 C 0.09 2.04 10.84 84.68 0.92 2.95 16 4 N -0.48 -12.35 10.34 -196.01 -2.03 -14.38 16 5 C 0.08 2.08 11.17 84.67 0.95 3.03 16 6 C -0.13 -3.69 9.60 22.63 0.22 -3.47 16 7 C -0.11 -3.22 5.91 -19.88 -0.12 -3.34 16 8 C 0.55 17.78 7.74 86.88 0.67 18.46 16 9 O -0.56 -19.66 13.51 -3.73 -0.05 -19.71 16 10 N -0.70 -22.40 5.35 -465.68 -2.49 -24.89 16 11 C 0.12 3.50 4.97 86.38 0.43 3.93 16 12 C 0.16 5.11 2.87 44.99 0.13 5.24 16 13 H 0.08 2.55 7.89 -2.38 -0.02 2.53 16 14 C -0.16 -4.41 9.17 71.98 0.66 -3.75 16 15 N -0.61 -25.16 1.87 -702.78 -1.31 -26.47 16 16 C 0.11 4.40 8.69 127.77 1.11 5.51 16 17 C -0.25 -12.55 9.60 84.04 0.81 -11.75 16 18 H 0.06 3.19 8.06 -2.91 -0.02 3.17 16 19 C -0.02 -1.04 5.36 84.86 0.45 -0.59 16 20 N -0.95 -55.76 13.97 21.65 0.30 -55.46 16 21 Si 0.94 44.48 24.81 68.60 1.70 46.18 16 22 H -0.29 -13.27 6.72 99.48 0.67 -12.60 16 23 H -0.32 -15.54 7.11 99.48 0.71 -14.84 16 24 H -0.26 -11.25 7.10 99.48 0.71 -10.55 16 25 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.09 1.40 8.06 -2.39 -0.02 1.39 16 27 H 0.07 2.00 5.89 -2.39 -0.01 1.99 16 28 H 0.19 2.85 8.06 -2.91 -0.02 2.82 16 29 H 0.18 3.68 8.06 -2.91 -0.02 3.66 16 30 H 0.14 3.90 6.58 -2.91 -0.02 3.88 16 31 H 0.41 13.71 6.07 -92.71 -0.56 13.14 16 32 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.06 1.82 7.84 -2.39 -0.02 1.80 16 34 H 0.05 1.51 6.66 -2.38 -0.02 1.50 16 35 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.02 0.62 8.14 -2.38 -0.02 0.60 16 38 H 0.02 0.95 2.91 -2.39 -0.01 0.94 16 39 H 0.06 2.07 6.43 -2.39 -0.02 2.05 16 40 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -63.35 323.01 3.32 -60.03 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 0.45 Total: 22.53 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 6.74 Total: 12.16 kcal Atomic # 7 Polarization: -115.66 SS G_CDS: -5.53 Total: -121.19 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.05 Total: -19.71 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.70 Total: 46.18 kcal Total: -63.35 3.32 -60.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570708634.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.068 kcal (2) G-P(sol) polarization free energy of solvation -63.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds