Wall clock time and date at job start Mon Mar 30 2020 02:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38169 * 120.50051 * 2 1 4 4 N 1.31800 * 120.89502 * 180.02562 * 3 2 1 5 5 C 1.31832 * 122.05090 * 0.02562 * 4 3 2 6 6 C 1.38128 * 120.89570 * 359.97438 * 5 4 3 7 7 C 1.39804 * 120.49930 * 180.02562 * 2 1 3 8 8 C 1.48150 * 120.92105 * 359.97438 * 7 2 1 9 9 O 1.21512 * 120.00126 * 353.53487 * 8 7 2 10 10 N 1.34773 * 119.99855 * 173.52996 * 8 7 2 11 11 C 1.46494 * 120.00016 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47175 * 179.97438 * 11 10 8 13 13 H 1.08992 * 109.47396 * 294.99999 * 12 11 10 14 14 C 1.53005 * 109.47136 * 174.99883 * 12 11 10 15 15 N 1.46501 * 109.46944 * 55.00165 * 12 11 10 16 16 C 1.46499 * 120.00330 * 59.99847 * 15 12 11 17 17 C 1.36936 * 119.99524 * 239.99984 * 15 12 11 18 18 H 1.07998 * 120.00389 * 16.12866 * 17 15 12 19 19 C 1.38820 * 119.99777 * 196.13360 * 17 15 12 20 20 N 1.31618 * 119.99781 * 16.58375 * 19 17 15 21 21 Si 1.86792 * 120.00061 * 196.58373 * 19 17 15 22 22 H 1.48499 * 109.47554 * 94.97554 * 21 19 17 23 23 H 1.48501 * 109.47291 * 214.98027 * 21 19 17 24 24 H 1.48511 * 109.47087 * 334.97527 * 21 19 17 25 25 H 1.09001 * 109.47572 * 264.93265 * 1 2 3 26 26 H 1.09001 * 109.47087 * 24.94050 * 1 2 3 27 27 H 1.09008 * 109.47405 * 144.93208 * 1 2 3 28 28 H 1.07991 * 119.55521 * 0.04085 * 3 2 1 29 29 H 1.08002 * 119.55333 * 179.97438 * 5 4 3 30 30 H 1.07999 * 120.50102 * 179.97438 * 6 5 4 31 31 H 0.97006 * 119.99857 * 359.97438 * 10 8 7 32 32 H 1.09003 * 109.46967 * 299.99667 * 11 10 8 33 33 H 1.09000 * 109.47127 * 59.99952 * 11 10 8 34 34 H 1.08998 * 109.47269 * 60.00079 * 14 12 11 35 35 H 1.08999 * 109.46877 * 180.02562 * 14 12 11 36 36 H 1.09000 * 109.46992 * 300.00015 * 14 12 11 37 37 H 1.09005 * 109.47094 * 94.64151 * 16 15 12 38 38 H 1.08998 * 109.47354 * 214.64371 * 16 15 12 39 39 H 1.09000 * 109.46824 * 334.64652 * 16 15 12 40 40 H 0.97000 * 119.99692 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2082 1.1905 0.0000 4 7 3.5261 1.1996 -0.0005 5 6 4.2334 0.0870 -0.0015 6 6 3.6137 -1.1474 -0.0016 7 6 2.2165 -1.2046 -0.0005 8 6 1.5077 -2.5056 -0.0006 9 8 0.2989 -2.5390 0.1184 10 7 2.2038 -3.6521 -0.1326 11 6 1.5030 -4.9385 -0.1332 12 6 2.5176 -6.0720 -0.2969 13 1 2.9882 -5.9996 -1.2773 14 6 1.8022 -7.4188 -0.1728 15 7 3.5415 -5.9651 0.7454 16 6 3.1590 -6.0338 2.1579 17 6 4.8562 -5.8009 0.3993 18 1 5.1164 -5.4918 -0.6023 19 6 5.8545 -6.0320 1.3358 20 7 5.5848 -6.7093 2.4316 21 14 7.5806 -5.3817 1.0407 22 1 7.7382 -4.0701 1.7190 23 1 8.5719 -6.3434 1.5861 24 1 7.8039 -5.2145 -0.4180 25 1 -0.3634 -0.0908 1.0236 26 1 -0.3633 0.9318 -0.4333 27 1 -0.3634 -0.8412 -0.5905 28 1 1.6691 2.1262 0.0007 29 1 5.3121 0.1415 -0.0023 30 1 4.1993 -2.0548 -0.0029 31 1 3.1688 -3.6254 -0.2280 32 1 0.9689 -5.0617 0.8090 33 1 0.7927 -4.9650 -0.9596 34 1 1.0403 -7.4984 -0.9482 35 1 2.5251 -8.2262 -0.2889 36 1 1.3316 -7.4912 0.8078 37 1 3.2664 -7.0584 2.5140 38 1 3.8040 -5.3768 2.7414 39 1 2.1219 -5.7174 2.2692 40 1 6.2825 -6.8710 3.0858 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570708635.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:16 Heat of formation + Delta-G solvation = 21.798473 kcal Electronic energy + Delta-G solvation = -21874.961992 eV Core-core repulsion = 18690.581654 eV Total energy + Delta-G solvation = -3184.380338 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.62517 -38.87034 -36.83027 -34.12079 -33.31769 -32.54567 -31.53408 -29.37345 -27.52992 -26.11275 -25.96697 -24.16858 -23.10977 -22.09220 -20.41515 -19.44420 -17.74149 -16.99869 -16.67291 -15.53389 -15.29552 -15.23040 -15.07500 -14.88633 -14.17006 -13.73476 -13.56266 -13.39674 -12.83916 -12.80352 -12.67342 -12.49289 -12.26316 -12.00387 -11.52675 -11.52208 -11.13076 -10.89888 -10.83122 -10.45137 -10.34977 -10.06621 -9.94088 -9.86355 -9.79372 -9.22838 -8.97065 -8.65076 -8.59880 -6.95688 -5.83232 -3.24625 0.77495 1.06165 3.07614 3.29794 3.36137 3.39297 3.43436 3.86248 4.38387 4.38450 4.70980 4.81278 4.83780 4.99244 5.29456 5.31510 5.39996 5.51531 5.63223 5.67369 5.77323 5.82712 5.85617 6.01445 6.06594 6.10622 6.20794 6.35930 6.39919 6.61020 6.67833 6.77290 6.78545 6.94218 7.36064 7.61043 7.73730 7.85408 7.88644 8.25493 8.45777 9.11932 9.76364 10.23596 11.21806 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015628 B = 0.006107 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.207442 B = 4583.901232 C = 6009.554728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.081 4.081 3 C 0.086 3.914 4 N -0.470 5.470 5 C 0.085 3.915 6 C -0.131 4.131 7 C -0.090 4.090 8 C 0.550 3.450 9 O -0.542 6.542 10 N -0.695 5.695 11 C 0.106 3.894 12 C 0.157 3.843 13 H 0.069 0.931 14 C -0.157 4.157 15 N -0.596 5.596 16 C 0.165 3.835 17 C -0.264 4.264 18 H 0.072 0.928 19 C 0.004 3.996 20 N -0.902 5.902 21 Si 0.900 3.100 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.279 1.279 25 H 0.076 0.924 26 H 0.059 0.941 27 H 0.097 0.903 28 H 0.158 0.842 29 H 0.161 0.839 30 H 0.147 0.853 31 H 0.411 0.589 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.042 0.958 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.025 0.975 38 H 0.047 0.953 39 H -0.003 1.003 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.829 9.824 -5.423 13.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.084 4.084 3 C -0.072 4.072 4 N -0.179 5.179 5 C -0.071 4.071 6 C -0.151 4.151 7 C -0.101 4.101 8 C 0.336 3.664 9 O -0.422 6.422 10 N -0.346 5.346 11 C -0.020 4.020 12 C 0.048 3.952 13 H 0.087 0.913 14 C -0.216 4.216 15 N -0.319 5.319 16 C 0.021 3.979 17 C -0.393 4.393 18 H 0.090 0.910 19 C -0.195 4.195 20 N -0.547 5.547 21 Si 0.730 3.270 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.204 1.204 25 H 0.094 0.906 26 H 0.078 0.922 27 H 0.115 0.885 28 H 0.176 0.824 29 H 0.178 0.822 30 H 0.164 0.836 31 H 0.248 0.752 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.043 0.957 38 H 0.066 0.934 39 H 0.016 0.984 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.097 10.485 -5.188 13.683 hybrid contribution 1.202 -0.680 0.061 1.382 sum -5.895 9.805 -5.127 12.537 Atomic orbital electron populations 1.20971 0.89234 1.03274 1.03718 1.21095 0.98309 0.92498 0.96494 1.22670 0.89834 0.97234 0.97427 1.67525 1.08285 1.31920 1.10161 1.22722 1.00589 0.87221 0.96614 1.22543 0.94112 1.00666 0.97777 1.20350 0.93807 0.94128 1.01778 1.18136 0.86915 0.83751 0.77550 1.90678 1.13604 1.87234 1.50651 1.45843 1.12016 1.05349 1.71374 1.22018 0.95657 0.83006 1.01271 1.20607 0.89459 0.91300 0.93812 0.91314 1.22189 0.99837 0.98980 1.00641 1.44064 1.02466 1.84740 1.00609 1.20753 0.93204 0.99874 0.84071 1.19259 0.81930 1.40308 0.97792 0.91016 1.24896 0.97769 0.99054 0.97766 1.70127 1.32498 1.40653 1.11391 0.86311 0.84538 0.78498 0.77660 1.21451 1.21813 1.20419 0.90550 0.92192 0.88506 0.82443 0.82153 0.83572 0.75179 0.91806 0.92196 0.93869 0.92177 0.93098 0.95685 0.93397 0.98407 0.93691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.38 8.88 36.00 0.32 -1.06 16 2 C -0.08 -1.09 5.93 -104.07 -0.62 -1.70 16 3 C 0.09 1.06 10.84 -17.59 -0.19 0.87 16 4 N -0.47 -6.39 10.34 -13.31 -0.14 -6.52 16 5 C 0.08 1.10 11.17 -17.59 -0.20 0.90 16 6 C -0.13 -1.80 9.60 -39.02 -0.37 -2.17 16 7 C -0.09 -1.34 5.91 -104.64 -0.62 -1.96 16 8 C 0.55 9.24 7.73 -12.19 -0.09 9.14 16 9 O -0.54 -10.00 13.52 5.36 0.07 -9.93 16 10 N -0.70 -11.65 5.34 -61.15 -0.33 -11.98 16 11 C 0.11 1.79 4.93 -4.04 -0.02 1.78 16 12 C 0.16 2.88 2.87 -67.93 -0.19 2.68 16 13 H 0.07 1.24 7.82 -51.93 -0.41 0.84 16 14 C -0.16 -2.64 9.19 37.16 0.34 -2.30 16 15 N -0.60 -13.32 2.29 -173.48 -0.40 -13.72 16 16 C 0.17 3.86 8.01 59.85 0.48 4.34 16 17 C -0.26 -6.48 9.39 -15.06 -0.14 -6.62 16 18 H 0.07 1.69 7.78 -52.49 -0.41 1.28 16 19 C 0.00 0.10 5.05 -17.43 -0.09 0.02 16 20 N -0.90 -24.97 10.52 55.49 0.58 -24.38 16 21 Si 0.90 20.38 29.58 -169.99 -5.03 15.35 16 22 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.55 8.06 -51.93 -0.42 0.13 16 27 H 0.10 1.35 5.87 -51.92 -0.30 1.04 16 28 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 29 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 30 H 0.15 1.95 6.59 -52.49 -0.35 1.61 16 31 H 0.41 6.92 6.08 -40.82 -0.25 6.67 16 32 H 0.06 1.16 6.87 -51.93 -0.36 0.81 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.05 0.87 7.67 -51.93 -0.40 0.48 16 37 H 0.02 0.64 7.54 -51.93 -0.39 0.25 16 38 H 0.05 1.22 6.93 -51.93 -0.36 0.87 16 39 H 0.00 -0.05 6.53 -51.93 -0.34 -0.39 16 40 H 0.25 6.86 8.31 -40.82 -0.34 6.53 16 LS Contribution 327.17 15.07 4.93 4.93 Total: -1.00 -29.00 327.17 -7.35 -36.35 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -5.65 Total: 5.99 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -1.40 Total: 3.91 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: -0.28 Total: -56.61 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.07 Total: -9.93 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.35 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.00 -7.35 -36.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570708635.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.150 kcal (2) G-P(sol) polarization free energy of solvation -29.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds