Wall clock time and date at job start Mon Mar 30 2020 02:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38169 * 120.50051 * 2 1 4 4 N 1.31800 * 120.89502 * 180.02562 * 3 2 1 5 5 C 1.31832 * 122.05090 * 0.02562 * 4 3 2 6 6 C 1.38128 * 120.89570 * 359.97438 * 5 4 3 7 7 C 1.39804 * 120.49930 * 180.02562 * 2 1 3 8 8 C 1.48150 * 120.92105 * 359.97438 * 7 2 1 9 9 O 1.21512 * 120.00126 * 353.53487 * 8 7 2 10 10 N 1.34773 * 119.99855 * 173.52996 * 8 7 2 11 11 C 1.46494 * 120.00016 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47175 * 179.97438 * 11 10 8 13 13 H 1.08992 * 109.47396 * 294.99999 * 12 11 10 14 14 C 1.53005 * 109.47136 * 174.99883 * 12 11 10 15 15 N 1.46501 * 109.46944 * 55.00165 * 12 11 10 16 16 C 1.46499 * 120.00330 * 59.99847 * 15 12 11 17 17 C 1.36936 * 119.99524 * 239.99984 * 15 12 11 18 18 H 1.07998 * 120.00389 * 16.12866 * 17 15 12 19 19 C 1.38820 * 119.99777 * 196.13360 * 17 15 12 20 20 N 1.31618 * 119.99781 * 16.58375 * 19 17 15 21 21 Si 1.86792 * 120.00061 * 196.58373 * 19 17 15 22 22 H 1.48499 * 109.47554 * 94.97554 * 21 19 17 23 23 H 1.48501 * 109.47291 * 214.98027 * 21 19 17 24 24 H 1.48511 * 109.47087 * 334.97527 * 21 19 17 25 25 H 1.09001 * 109.47572 * 264.93265 * 1 2 3 26 26 H 1.09001 * 109.47087 * 24.94050 * 1 2 3 27 27 H 1.09008 * 109.47405 * 144.93208 * 1 2 3 28 28 H 1.07991 * 119.55521 * 0.04085 * 3 2 1 29 29 H 1.08002 * 119.55333 * 179.97438 * 5 4 3 30 30 H 1.07999 * 120.50102 * 179.97438 * 6 5 4 31 31 H 0.97006 * 119.99857 * 359.97438 * 10 8 7 32 32 H 1.09003 * 109.46967 * 299.99667 * 11 10 8 33 33 H 1.09000 * 109.47127 * 59.99952 * 11 10 8 34 34 H 1.08998 * 109.47269 * 60.00079 * 14 12 11 35 35 H 1.08999 * 109.46877 * 180.02562 * 14 12 11 36 36 H 1.09000 * 109.46992 * 300.00015 * 14 12 11 37 37 H 1.09005 * 109.47094 * 94.64151 * 16 15 12 38 38 H 1.08998 * 109.47354 * 214.64371 * 16 15 12 39 39 H 1.09000 * 109.46824 * 334.64652 * 16 15 12 40 40 H 0.97000 * 119.99692 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2082 1.1905 0.0000 4 7 3.5261 1.1996 -0.0005 5 6 4.2334 0.0870 -0.0015 6 6 3.6137 -1.1474 -0.0016 7 6 2.2165 -1.2046 -0.0005 8 6 1.5077 -2.5056 -0.0006 9 8 0.2989 -2.5390 0.1184 10 7 2.2038 -3.6521 -0.1326 11 6 1.5030 -4.9385 -0.1332 12 6 2.5176 -6.0720 -0.2969 13 1 2.9882 -5.9996 -1.2773 14 6 1.8022 -7.4188 -0.1728 15 7 3.5415 -5.9651 0.7454 16 6 3.1590 -6.0338 2.1579 17 6 4.8562 -5.8009 0.3993 18 1 5.1164 -5.4918 -0.6023 19 6 5.8545 -6.0320 1.3358 20 7 5.5848 -6.7093 2.4316 21 14 7.5806 -5.3817 1.0407 22 1 7.7382 -4.0701 1.7190 23 1 8.5719 -6.3434 1.5861 24 1 7.8039 -5.2145 -0.4180 25 1 -0.3634 -0.0908 1.0236 26 1 -0.3633 0.9318 -0.4333 27 1 -0.3634 -0.8412 -0.5905 28 1 1.6691 2.1262 0.0007 29 1 5.3121 0.1415 -0.0023 30 1 4.1993 -2.0548 -0.0029 31 1 3.1688 -3.6254 -0.2280 32 1 0.9689 -5.0617 0.8090 33 1 0.7927 -4.9650 -0.9596 34 1 1.0403 -7.4984 -0.9482 35 1 2.5251 -8.2262 -0.2889 36 1 1.3316 -7.4912 0.8078 37 1 3.2664 -7.0584 2.5140 38 1 3.8040 -5.3768 2.7414 39 1 2.1219 -5.7174 2.2692 40 1 6.2825 -6.8710 3.0858 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570708635.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:15 Heat of formation + Delta-G solvation = 4.261076 kcal Electronic energy + Delta-G solvation = -21875.722470 eV Core-core repulsion = 18690.581654 eV Total energy + Delta-G solvation = -3185.140816 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.74060 -40.11597 -38.42741 -35.62408 -34.38090 -34.04859 -32.80184 -31.09747 -28.57437 -28.04293 -27.21645 -25.37516 -24.82819 -23.14220 -21.66695 -20.99484 -19.03614 -18.77112 -17.80396 -17.18330 -16.56730 -16.42185 -16.25406 -16.17225 -15.77124 -14.99974 -14.94409 -14.55324 -14.41832 -14.32001 -13.93544 -13.66736 -13.53762 -13.28845 -13.06767 -12.84661 -12.65624 -12.53500 -12.49734 -12.26226 -12.06938 -11.75675 -11.53153 -11.24868 -10.90234 -10.59772 -10.35467 -10.04644 -9.87634 -8.85618 -7.79461 -5.21110 -0.32883 0.06985 1.50502 1.52603 1.60135 1.84957 2.16172 2.53811 2.80570 3.35695 3.47001 3.56170 3.65367 3.77870 3.83404 3.97936 4.03525 4.34422 4.43315 4.58057 4.63900 4.69695 4.74159 4.75562 4.81666 4.86905 4.91902 5.03799 5.10122 5.22987 5.31800 5.41318 5.43946 5.56825 5.63977 5.66651 5.76223 6.32503 6.53671 6.87555 7.13051 7.17774 7.89777 8.33514 9.25140 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015628 B = 0.006107 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.207442 B = 4583.901232 C = 6009.554728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.087 4.087 3 C 0.092 3.908 4 N -0.482 5.482 5 C 0.083 3.917 6 C -0.136 4.136 7 C -0.109 4.109 8 C 0.549 3.451 9 O -0.562 6.562 10 N -0.698 5.698 11 C 0.116 3.884 12 C 0.156 3.844 13 H 0.076 0.924 14 C -0.149 4.149 15 N -0.604 5.604 16 C 0.186 3.814 17 C -0.254 4.254 18 H 0.085 0.915 19 C -0.053 4.053 20 N -0.940 5.940 21 Si 0.960 3.040 22 H -0.287 1.287 23 H -0.307 1.307 24 H -0.263 1.263 25 H 0.072 0.928 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.192 0.808 29 H 0.183 0.817 30 H 0.146 0.854 31 H 0.410 0.590 32 H 0.050 0.950 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.042 0.958 36 H 0.043 0.957 37 H -0.003 1.003 38 H 0.019 0.981 39 H 0.017 0.983 40 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.223 11.523 -6.939 15.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.090 4.090 3 C -0.066 4.066 4 N -0.191 5.191 5 C -0.073 4.073 6 C -0.157 4.157 7 C -0.120 4.120 8 C 0.336 3.664 9 O -0.443 6.443 10 N -0.348 5.348 11 C -0.009 4.009 12 C 0.048 3.952 13 H 0.095 0.905 14 C -0.209 4.209 15 N -0.327 5.327 16 C 0.041 3.959 17 C -0.384 4.384 18 H 0.103 0.897 19 C -0.248 4.248 20 N -0.587 5.587 21 Si 0.789 3.211 22 H -0.214 1.214 23 H -0.234 1.234 24 H -0.187 1.187 25 H 0.091 0.909 26 H 0.110 0.890 27 H 0.094 0.906 28 H 0.208 0.792 29 H 0.200 0.800 30 H 0.164 0.836 31 H 0.248 0.752 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.015 0.985 38 H 0.038 0.962 39 H 0.035 0.965 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.509 12.194 -6.748 15.831 hybrid contribution 1.238 -1.172 0.475 1.770 sum -6.271 11.022 -6.273 14.148 Atomic orbital electron populations 1.20924 0.88348 1.04095 1.03302 1.21330 0.99044 0.92361 0.96217 1.23180 0.89562 0.98066 0.95791 1.67614 1.08948 1.32075 1.10469 1.23084 1.01721 0.86698 0.95783 1.22576 0.93718 1.01175 0.98187 1.20358 0.94420 0.93760 1.03489 1.18432 0.86752 0.84327 0.76841 1.90669 1.14441 1.87628 1.51568 1.45857 1.11959 1.05428 1.71542 1.21857 0.95224 0.82549 1.01306 1.20797 0.88983 0.92600 0.92790 0.90543 1.22078 1.00053 0.97172 1.01559 1.44202 1.02835 1.84683 1.00986 1.20379 0.93497 0.97454 0.84551 1.19648 0.82769 1.38078 0.97920 0.89740 1.25598 1.01156 1.00058 0.97989 1.70295 1.33050 1.42885 1.12496 0.85350 0.80331 0.77250 0.78161 1.21422 1.23438 1.18687 0.90943 0.88975 0.90587 0.79155 0.79956 0.83641 0.75249 0.93142 0.90306 0.90344 0.93908 0.93779 0.98501 0.96234 0.96459 0.94662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.43 8.88 71.23 0.63 -1.80 16 2 C -0.09 -2.16 5.93 -19.50 -0.12 -2.28 16 3 C 0.09 2.00 10.84 84.68 0.92 2.92 16 4 N -0.48 -11.93 10.34 -196.01 -2.03 -13.96 16 5 C 0.08 1.98 11.17 84.67 0.95 2.93 16 6 C -0.14 -3.59 9.60 22.63 0.22 -3.38 16 7 C -0.11 -3.16 5.91 -19.88 -0.12 -3.27 16 8 C 0.55 18.04 7.73 86.88 0.67 18.72 16 9 O -0.56 -20.40 13.52 -3.75 -0.05 -20.45 16 10 N -0.70 -22.73 5.34 -465.69 -2.49 -25.22 16 11 C 0.12 3.76 4.93 86.38 0.43 4.18 16 12 C 0.16 5.48 2.87 44.99 0.13 5.61 16 13 H 0.08 2.60 7.82 -2.39 -0.02 2.58 16 14 C -0.15 -4.80 9.19 71.98 0.66 -4.13 16 15 N -0.60 -26.82 2.29 -702.77 -1.61 -28.43 16 16 C 0.19 8.86 8.01 127.77 1.02 9.88 16 17 C -0.25 -12.34 9.39 84.04 0.79 -11.55 16 18 H 0.08 3.83 7.78 -2.91 -0.02 3.81 16 19 C -0.05 -2.77 5.05 84.86 0.43 -2.34 16 20 N -0.94 -53.37 10.52 21.65 0.23 -53.14 16 21 Si 0.96 42.01 29.58 68.60 2.03 44.04 16 22 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.31 -14.11 7.11 99.48 0.71 -13.40 16 24 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 25 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.09 1.40 8.06 -2.39 -0.02 1.38 16 27 H 0.08 2.04 5.87 -2.38 -0.01 2.03 16 28 H 0.19 2.76 8.06 -2.92 -0.02 2.74 16 29 H 0.18 3.40 8.06 -2.91 -0.02 3.37 16 30 H 0.15 3.77 6.59 -2.91 -0.02 3.75 16 31 H 0.41 13.45 6.08 -92.70 -0.56 12.89 16 32 H 0.05 1.78 6.87 -2.39 -0.02 1.77 16 33 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.04 1.47 7.67 -2.39 -0.02 1.45 16 37 H 0.00 -0.18 7.54 -2.38 -0.02 -0.19 16 38 H 0.02 1.01 6.93 -2.39 -0.02 0.99 16 39 H 0.02 0.73 6.53 -2.39 -0.02 0.71 16 40 H 0.24 13.71 8.31 -92.71 -0.77 12.94 16 Total: -1.00 -62.36 327.17 3.17 -59.18 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: 0.48 Total: 22.50 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: 6.61 Total: 15.48 kcal Atomic # 7 Polarization: -114.85 SS G_CDS: -5.90 Total: -120.75 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.05 Total: -20.45 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -62.36 3.17 -59.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570708635.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.445 kcal (2) G-P(sol) polarization free energy of solvation -62.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds