Wall clock time and date at job start Mon Mar 30 2020 02:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34674 * 126.59151 * 2 1 4 4 N 1.34125 * 108.02386 * 180.02562 * 3 2 1 5 5 C 1.30503 * 109.25636 * 0.02562 * 4 3 2 6 6 C 1.50694 * 125.65155 * 179.73646 * 5 4 3 7 7 N 1.46496 * 112.85176 * 121.13568 * 6 5 4 8 8 C 1.34787 * 120.00083 * 294.77473 * 7 6 5 9 9 O 1.21283 * 119.99591 * 5.04816 * 8 7 6 10 10 C 1.50696 * 119.99847 * 185.05265 * 8 7 6 11 11 C 1.53001 * 109.46689 * 179.97438 * 10 8 7 12 12 C 1.50704 * 109.47116 * 180.02562 * 11 10 8 13 13 H 1.07998 * 119.99999 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99858 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99610 * 179.97438 * 14 12 11 16 16 Si 1.86792 * 120.00327 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47302 * 89.99945 * 16 14 12 18 18 H 1.48502 * 109.47367 * 209.99976 * 16 14 12 19 19 H 1.48504 * 109.47117 * 329.99851 * 16 14 12 20 20 C 1.53779 * 113.61599 * 349.93910 * 6 5 4 21 21 C 1.53951 * 87.02435 * 220.05025 * 20 6 5 22 22 C 1.53782 * 113.61587 * 252.33033 * 6 5 4 23 23 N 1.35041 * 108.69689 * 359.97438 * 5 4 3 24 24 H 0.97000 * 126.39784 * 180.02562 * 23 5 4 25 25 H 1.09007 * 109.46711 * 89.97892 * 1 2 3 26 26 H 1.09004 * 109.47245 * 209.97327 * 1 2 3 27 27 H 1.08994 * 109.47584 * 329.98020 * 1 2 3 28 28 H 1.08001 * 125.98703 * 359.97438 * 3 2 1 29 29 H 0.96999 * 120.00547 * 114.77228 * 7 6 5 30 30 H 1.08993 * 109.47429 * 299.99556 * 10 8 7 31 31 H 1.08993 * 109.47181 * 60.00349 * 10 8 7 32 32 H 1.09007 * 109.47343 * 299.99772 * 11 10 8 33 33 H 1.08997 * 109.47474 * 59.99679 * 11 10 8 34 34 H 0.97002 * 119.99717 * 179.97438 * 15 14 12 35 35 H 1.09007 * 113.61319 * 334.57061 * 20 6 5 36 36 H 1.08996 * 113.61799 * 105.46731 * 20 6 5 37 37 H 1.09002 * 113.53624 * 270.81292 * 21 20 6 38 38 H 1.09002 * 113.74746 * 139.94007 * 21 20 6 39 39 H 1.08995 * 113.61465 * 254.53333 * 22 6 5 40 40 H 1.09002 * 113.61028 * 25.43428 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0813 0.0000 4 7 3.5812 0.6542 -0.0006 5 6 3.5969 -0.6507 -0.0015 6 6 4.8318 -1.5143 -0.0080 7 7 4.9036 -2.4131 1.1466 8 6 5.0342 -1.9057 2.3885 9 8 5.0003 -0.7056 2.5599 10 6 5.2225 -2.8298 3.5639 11 6 5.3442 -2.0048 4.8467 12 6 5.5331 -2.9288 6.0222 13 1 5.5629 -3.9976 5.8696 14 6 5.6679 -2.4097 7.2924 15 7 5.8322 -3.2162 8.3182 16 14 5.6170 -0.5613 7.5562 17 1 4.2157 -0.1342 7.7991 18 1 6.4534 -0.2056 8.7306 19 1 6.1417 0.1258 6.3487 20 6 6.1305 -0.7302 -0.2599 21 6 6.5774 -1.9103 -1.1417 22 6 5.0852 -2.2169 -1.3522 23 7 2.3230 -1.0989 -0.0009 24 1 2.0392 -2.0265 -0.0010 25 1 -0.3633 0.0004 -1.0278 26 1 -0.3634 -0.8902 0.5134 27 1 -0.3634 0.8897 0.5141 28 1 1.9864 2.1118 -0.0004 29 1 4.8572 -3.3733 1.0175 30 1 4.3652 -3.4983 3.6415 31 1 6.1297 -3.4171 3.4227 32 1 6.2018 -1.3365 4.7690 33 1 4.4373 -1.4171 4.9882 34 1 5.9274 -2.8510 9.2118 35 1 5.9806 0.1966 -0.8139 36 1 6.7401 -0.5963 0.6337 37 1 7.1094 -2.6871 -0.5924 38 1 7.0935 -1.6069 -2.0525 39 1 4.8520 -3.2816 -1.3391 40 1 4.6489 -1.6975 -2.2054 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588267376.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:49 Heat of formation + Delta-G solvation = 31.831588 kcal Electronic energy + Delta-G solvation = -21679.697178 eV Core-core repulsion = 18495.751908 eV Total energy + Delta-G solvation = -3183.945269 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.17863 -39.95998 -37.88577 -33.47406 -33.10005 -32.69958 -31.67701 -31.14586 -27.56347 -26.20297 -25.87243 -24.28351 -21.63745 -21.17790 -20.84935 -19.72928 -19.08041 -17.72314 -17.23303 -16.07467 -15.80071 -15.48293 -15.03980 -14.63504 -14.38563 -14.08047 -13.76455 -13.41128 -13.19243 -12.95421 -12.70695 -12.62672 -12.55810 -12.42319 -12.00161 -11.42516 -11.13749 -11.07385 -10.93502 -10.59710 -10.16189 -10.04388 -9.91444 -9.82972 -9.77192 -9.23316 -9.17042 -9.05049 -8.50737 -8.15625 -6.03418 -4.02210 1.99329 2.99851 3.05066 3.14294 3.38783 3.42804 3.45545 3.57707 4.25161 4.37388 4.47336 4.51543 4.74550 4.82447 4.98880 5.01861 5.32105 5.32388 5.37064 5.39890 5.47905 5.61571 5.64719 5.67442 5.71398 5.91040 6.04180 6.07299 6.09814 6.20026 6.26833 6.64253 6.67632 6.82133 7.36104 7.36880 7.43362 7.70604 7.79112 8.20632 8.49588 8.66698 8.99322 9.59957 11.09357 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017783 B = 0.004838 C = 0.004237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.159711 B = 5786.667677 C = 6606.366463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.033 4.033 3 C -0.025 4.025 4 N -0.465 5.465 5 C 0.225 3.775 6 C 0.228 3.772 7 N -0.727 5.727 8 C 0.506 3.494 9 O -0.511 6.511 10 C -0.120 4.120 11 C 0.003 3.997 12 C -0.525 4.525 13 H 0.072 0.928 14 C 0.070 3.930 15 N -0.904 5.904 16 Si 0.876 3.124 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.260 1.260 20 C -0.115 4.115 21 C -0.140 4.140 22 C -0.131 4.131 23 N -0.561 5.561 24 H 0.413 0.587 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.166 0.834 29 H 0.400 0.600 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.024 0.976 33 H 0.017 0.983 34 H 0.263 0.737 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.879 0.906 -23.300 24.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.149 4.149 3 C -0.174 4.174 4 N -0.183 5.183 5 C -0.040 4.040 6 C 0.139 3.861 7 N -0.383 5.383 8 C 0.294 3.706 9 O -0.383 6.383 10 C -0.160 4.160 11 C -0.035 4.035 12 C -0.563 4.563 13 H 0.090 0.910 14 C -0.131 4.131 15 N -0.543 5.543 16 Si 0.703 3.297 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.185 1.185 20 C -0.154 4.154 21 C -0.177 4.177 22 C -0.169 4.169 23 N -0.163 5.163 24 H 0.250 0.750 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.100 0.900 28 H 0.184 0.816 29 H 0.236 0.764 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.043 0.957 33 H 0.036 0.964 34 H 0.073 0.927 35 H 0.118 0.882 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.155 2.371 -22.934 23.864 hybrid contribution -1.098 -0.533 0.392 1.282 sum -7.253 1.838 -22.542 23.752 Atomic orbital electron populations 1.20184 0.87314 1.03400 1.02334 1.21246 0.94315 0.87289 1.12041 1.22096 0.88478 0.98440 1.08396 1.70156 1.22040 1.07980 1.18151 1.23013 0.84799 0.91051 1.05116 1.19366 0.89637 0.90127 0.86986 1.46054 1.77805 1.09084 1.05327 1.21627 0.74856 0.90437 0.83663 1.90742 1.46913 1.15982 1.84704 1.21666 1.02947 0.98347 0.93025 1.19359 0.97574 0.95542 0.91062 1.21100 1.50320 0.94559 0.90306 0.90976 1.24955 0.94289 0.97924 0.95963 1.69913 1.50182 1.34916 0.99242 0.86812 0.78447 0.86295 0.78122 1.20305 1.21381 1.18453 1.23084 0.93992 0.97717 1.00596 1.22902 0.95208 0.99121 1.00493 1.23246 0.97844 1.00560 0.95295 1.43034 1.06990 1.09053 1.57257 0.75002 0.91197 0.91860 0.89994 0.81628 0.76448 0.89951 0.89496 0.95742 0.96433 0.92714 0.88205 0.90172 0.89659 0.90720 0.90546 0.88712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.44 36.00 0.38 -0.23 16 2 C -0.03 -0.41 7.24 -81.60 -0.59 -1.00 16 3 C -0.03 -0.37 11.79 -17.81 -0.21 -0.58 16 4 N -0.46 -7.88 10.54 -10.82 -0.11 -7.99 16 5 C 0.23 3.30 6.18 -155.42 -0.96 2.34 16 6 C 0.23 2.88 1.02 -132.16 -0.13 2.74 16 7 N -0.73 -9.44 5.14 -47.93 -0.25 -9.69 16 8 C 0.51 9.22 7.32 -10.98 -0.08 9.14 16 9 O -0.51 -11.64 14.77 5.55 0.08 -11.56 16 10 C -0.12 -2.31 5.64 -27.88 -0.16 -2.47 16 11 C 0.00 0.06 3.33 -27.88 -0.09 -0.03 16 12 C -0.52 -15.13 9.66 -34.44 -0.33 -15.46 16 13 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 14 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 15 N -0.90 -28.19 13.96 55.43 0.77 -27.42 16 16 Si 0.88 23.04 27.47 -169.99 -4.67 18.37 16 17 H -0.28 -7.21 7.11 56.52 0.40 -6.80 16 18 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 19 H -0.26 -6.87 6.54 56.52 0.37 -6.50 16 20 C -0.11 -1.51 6.85 -25.83 -0.18 -1.69 16 21 C -0.14 -1.28 8.00 -25.83 -0.21 -1.49 16 22 C -0.13 -1.13 7.36 -25.92 -0.19 -1.32 16 23 N -0.56 -6.83 6.15 -6.54 -0.04 -6.87 16 24 H 0.41 3.82 8.96 -40.82 -0.37 3.46 16 25 H 0.07 0.46 8.14 -51.92 -0.42 0.03 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.17 2.01 8.06 -52.49 -0.42 1.58 16 29 H 0.40 3.79 8.66 -40.82 -0.35 3.43 16 30 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 32 H 0.02 0.65 7.15 -51.93 -0.37 0.28 16 33 H 0.02 0.46 7.53 -51.93 -0.39 0.07 16 34 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 35 H 0.10 1.36 7.74 -51.92 -0.40 0.96 16 36 H 0.08 1.26 7.56 -51.93 -0.39 0.87 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.50 8.09 -51.93 -0.42 0.08 16 40 H 0.09 0.79 8.09 -51.93 -0.42 0.37 16 LS Contribution 334.21 15.07 5.04 5.04 Total: -1.00 -37.22 334.21 -8.12 -45.34 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -6.08 Total: 2.83 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -2.85 Total: -8.04 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: 0.37 Total: -51.97 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.08 Total: -11.56 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -4.67 Total: 18.37 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -37.22 -8.12 -45.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588267376.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.172 kcal (2) G-P(sol) polarization free energy of solvation -37.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds