Wall clock time and date at job start Mon Mar 30 2020 02:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34674 * 126.59151 * 2 1 4 4 N 1.34125 * 108.02386 * 180.02562 * 3 2 1 5 5 C 1.30503 * 109.25636 * 0.02562 * 4 3 2 6 6 C 1.50694 * 125.65155 * 179.73646 * 5 4 3 7 7 N 1.46496 * 112.85176 * 121.13568 * 6 5 4 8 8 C 1.34787 * 120.00083 * 294.77473 * 7 6 5 9 9 O 1.21283 * 119.99591 * 5.04816 * 8 7 6 10 10 C 1.50696 * 119.99847 * 185.05265 * 8 7 6 11 11 C 1.53001 * 109.46689 * 179.97438 * 10 8 7 12 12 C 1.50704 * 109.47116 * 180.02562 * 11 10 8 13 13 H 1.07998 * 119.99999 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99858 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99610 * 179.97438 * 14 12 11 16 16 Si 1.86792 * 120.00327 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47302 * 89.99945 * 16 14 12 18 18 H 1.48502 * 109.47367 * 209.99976 * 16 14 12 19 19 H 1.48504 * 109.47117 * 329.99851 * 16 14 12 20 20 C 1.53779 * 113.61599 * 349.93910 * 6 5 4 21 21 C 1.53951 * 87.02435 * 220.05025 * 20 6 5 22 22 C 1.53782 * 113.61587 * 252.33033 * 6 5 4 23 23 N 1.35041 * 108.69689 * 359.97438 * 5 4 3 24 24 H 0.97000 * 126.39784 * 180.02562 * 23 5 4 25 25 H 1.09007 * 109.46711 * 89.97892 * 1 2 3 26 26 H 1.09004 * 109.47245 * 209.97327 * 1 2 3 27 27 H 1.08994 * 109.47584 * 329.98020 * 1 2 3 28 28 H 1.08001 * 125.98703 * 359.97438 * 3 2 1 29 29 H 0.96999 * 120.00547 * 114.77228 * 7 6 5 30 30 H 1.08993 * 109.47429 * 299.99556 * 10 8 7 31 31 H 1.08993 * 109.47181 * 60.00349 * 10 8 7 32 32 H 1.09007 * 109.47343 * 299.99772 * 11 10 8 33 33 H 1.08997 * 109.47474 * 59.99679 * 11 10 8 34 34 H 0.97002 * 119.99717 * 179.97438 * 15 14 12 35 35 H 1.09007 * 113.61319 * 334.57061 * 20 6 5 36 36 H 1.08996 * 113.61799 * 105.46731 * 20 6 5 37 37 H 1.09002 * 113.53624 * 270.81292 * 21 20 6 38 38 H 1.09002 * 113.74746 * 139.94007 * 21 20 6 39 39 H 1.08995 * 113.61465 * 254.53333 * 22 6 5 40 40 H 1.09002 * 113.61028 * 25.43428 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0813 0.0000 4 7 3.5812 0.6542 -0.0006 5 6 3.5969 -0.6507 -0.0015 6 6 4.8318 -1.5143 -0.0080 7 7 4.9036 -2.4131 1.1466 8 6 5.0342 -1.9057 2.3885 9 8 5.0003 -0.7056 2.5599 10 6 5.2225 -2.8298 3.5639 11 6 5.3442 -2.0048 4.8467 12 6 5.5331 -2.9288 6.0222 13 1 5.5629 -3.9976 5.8696 14 6 5.6679 -2.4097 7.2924 15 7 5.8322 -3.2162 8.3182 16 14 5.6170 -0.5613 7.5562 17 1 4.2157 -0.1342 7.7991 18 1 6.4534 -0.2056 8.7306 19 1 6.1417 0.1258 6.3487 20 6 6.1305 -0.7302 -0.2599 21 6 6.5774 -1.9103 -1.1417 22 6 5.0852 -2.2169 -1.3522 23 7 2.3230 -1.0989 -0.0009 24 1 2.0392 -2.0265 -0.0010 25 1 -0.3633 0.0004 -1.0278 26 1 -0.3634 -0.8902 0.5134 27 1 -0.3634 0.8897 0.5141 28 1 1.9864 2.1118 -0.0004 29 1 4.8572 -3.3733 1.0175 30 1 4.3652 -3.4983 3.6415 31 1 6.1297 -3.4171 3.4227 32 1 6.2018 -1.3365 4.7690 33 1 4.4373 -1.4171 4.9882 34 1 5.9274 -2.8510 9.2118 35 1 5.9806 0.1966 -0.8139 36 1 6.7401 -0.5963 0.6337 37 1 7.1094 -2.6871 -0.5924 38 1 7.0935 -1.6069 -2.0525 39 1 4.8520 -3.2816 -1.3391 40 1 4.6489 -1.6975 -2.2054 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588267376.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:48 Heat of formation + Delta-G solvation = 4.550452 kcal Electronic energy + Delta-G solvation = -21680.880177 eV Core-core repulsion = 18495.751908 eV Total energy + Delta-G solvation = -3185.128268 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.17952 -41.13516 -39.11749 -35.56539 -34.36389 -33.69964 -33.21666 -32.50145 -28.70503 -27.75508 -26.80007 -25.34150 -23.38085 -22.17675 -21.82604 -21.26166 -20.10379 -19.24694 -18.72075 -17.60554 -16.89630 -16.68757 -16.26506 -16.02630 -15.92147 -15.43017 -14.86536 -14.70851 -14.55656 -14.31826 -14.18738 -13.63649 -13.44866 -13.37728 -13.29262 -12.99245 -12.88607 -12.14602 -12.03501 -12.00117 -11.89264 -11.79533 -11.47725 -11.42619 -10.96994 -10.88819 -10.81443 -10.72326 -10.23917 -9.15024 -8.35046 -6.37136 1.01515 1.28029 1.30850 1.46271 1.66656 1.93868 2.13985 2.31073 2.34943 3.00881 3.31311 3.52620 3.62536 3.86764 3.97053 4.05654 4.25304 4.28654 4.39320 4.46282 4.51809 4.68327 4.74693 4.77888 4.78283 4.95984 5.00844 5.06108 5.06748 5.10841 5.24444 5.32209 5.33577 5.40675 5.57410 5.61658 5.82560 6.20391 6.47191 6.58347 6.69115 7.19034 7.28458 7.33683 8.80577 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017783 B = 0.004838 C = 0.004237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.159711 B = 5786.667677 C = 6606.366463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.020 4.020 3 C -0.067 4.067 4 N -0.511 5.511 5 C 0.209 3.791 6 C 0.216 3.784 7 N -0.700 5.700 8 C 0.512 3.488 9 O -0.563 6.563 10 C -0.113 4.113 11 C 0.007 3.993 12 C -0.527 4.527 13 H 0.054 0.946 14 C 0.019 3.981 15 N -0.941 5.941 16 Si 0.932 3.068 17 H -0.271 1.271 18 H -0.275 1.275 19 H -0.267 1.267 20 C -0.129 4.129 21 C -0.125 4.125 22 C -0.107 4.107 23 N -0.553 5.553 24 H 0.428 0.572 25 H 0.092 0.908 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.175 0.825 29 H 0.422 0.578 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.006 0.994 33 H 0.001 0.999 34 H 0.268 0.732 35 H 0.086 0.914 36 H 0.044 0.956 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.110 0.890 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.974 -0.344 -25.387 26.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.136 4.136 3 C -0.214 4.214 4 N -0.230 5.230 5 C -0.057 4.057 6 C 0.127 3.873 7 N -0.355 5.355 8 C 0.300 3.700 9 O -0.440 6.440 10 C -0.153 4.153 11 C -0.031 4.031 12 C -0.565 4.565 13 H 0.073 0.927 14 C -0.179 4.179 15 N -0.581 5.581 16 Si 0.757 3.243 17 H -0.196 1.196 18 H -0.200 1.200 19 H -0.192 1.192 20 C -0.168 4.168 21 C -0.162 4.162 22 C -0.146 4.146 23 N -0.157 5.157 24 H 0.267 0.733 25 H 0.110 0.890 26 H 0.093 0.907 27 H 0.107 0.893 28 H 0.192 0.808 29 H 0.261 0.739 30 H 0.121 0.879 31 H 0.124 0.876 32 H 0.024 0.976 33 H 0.020 0.980 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.063 0.937 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.129 0.871 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.263 1.057 -25.063 26.116 hybrid contribution -0.775 -0.158 1.019 1.290 sum -8.038 0.899 -24.045 25.368 Atomic orbital electron populations 1.20325 0.84238 1.04300 1.04045 1.21824 0.96016 0.86549 1.09250 1.22473 0.88477 0.99903 1.10550 1.70074 1.23685 1.09729 1.19541 1.23255 0.86069 0.90822 1.05503 1.19705 0.88661 0.90539 0.88374 1.45653 1.75601 1.10367 1.03924 1.21309 0.74489 0.89255 0.84957 1.90737 1.49663 1.17976 1.85658 1.21484 1.04891 0.97934 0.90975 1.19189 0.95847 0.95137 0.92918 1.21410 1.49187 0.94348 0.91522 0.92733 1.25708 0.94352 1.01827 0.96041 1.70007 1.51577 1.36698 0.99834 0.85923 0.78811 0.81537 0.77982 1.19626 1.20034 1.19186 1.23100 0.94583 0.99092 1.00028 1.22882 0.96126 0.97019 1.00219 1.23199 0.96702 1.02164 0.92502 1.43022 1.06281 1.09880 1.56534 0.73269 0.88959 0.90696 0.89314 0.80760 0.73887 0.87898 0.87569 0.97570 0.98046 0.92322 0.89554 0.93712 0.88810 0.88951 0.87128 0.88006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.97 10.44 71.23 0.74 -0.23 16 2 C -0.02 -0.45 7.24 40.95 0.30 -0.16 16 3 C -0.07 -1.95 11.79 83.53 0.98 -0.96 16 4 N -0.51 -17.69 10.54 -188.13 -1.98 -19.67 16 5 C 0.21 5.96 6.18 138.13 0.85 6.82 16 6 C 0.22 5.12 1.02 3.38 0.00 5.12 16 7 N -0.70 -16.68 5.14 -423.93 -2.18 -18.86 16 8 C 0.51 18.26 7.32 87.65 0.64 18.90 16 9 O -0.56 -26.18 14.77 -3.04 -0.04 -26.22 16 10 C -0.11 -4.23 5.64 29.85 0.17 -4.06 16 11 C 0.01 0.36 3.33 29.85 0.10 0.46 16 12 C -0.53 -30.55 9.66 25.60 0.25 -30.30 16 13 H 0.05 3.29 7.99 -2.91 -0.02 3.26 16 14 C 0.02 1.13 5.47 84.65 0.46 1.59 16 15 N -0.94 -59.09 13.96 21.45 0.30 -58.79 16 16 Si 0.93 48.04 27.47 68.60 1.88 49.93 16 17 H -0.27 -13.59 7.11 99.48 0.71 -12.88 16 18 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 19 H -0.27 -13.97 6.54 99.48 0.65 -13.32 16 20 C -0.13 -3.38 6.85 31.18 0.21 -3.17 16 21 C -0.13 -1.97 8.00 31.18 0.25 -1.72 16 22 C -0.11 -1.46 7.36 31.12 0.23 -1.23 16 23 N -0.55 -12.46 6.15 -174.61 -1.07 -13.53 16 24 H 0.43 6.69 8.96 -92.71 -0.83 5.86 16 25 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 26 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.18 4.37 8.06 -2.91 -0.02 4.35 16 29 H 0.42 6.39 8.66 -92.71 -0.80 5.59 16 30 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 31 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 32 H 0.01 0.32 7.15 -2.38 -0.02 0.30 16 33 H 0.00 0.06 7.53 -2.39 -0.02 0.04 16 34 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 35 H 0.09 2.45 7.74 -2.38 -0.02 2.44 16 36 H 0.04 1.46 7.56 -2.39 -0.02 1.45 16 37 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.11 0.82 8.09 -2.39 -0.02 0.80 16 40 H 0.10 1.34 8.09 -2.39 -0.02 1.32 16 Total: -1.00 -83.95 334.21 1.46 -82.49 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -0.63 Total: 13.61 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: 5.19 Total: -8.95 kcal Atomic # 7 Polarization: -105.92 SS G_CDS: -4.94 Total: -110.86 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.04 Total: -26.22 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 1.88 Total: 49.93 kcal Total: -83.95 1.46 -82.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588267376.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.036 kcal (2) G-P(sol) polarization free energy of solvation -83.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds