Wall clock time and date at job start Mon Mar 30 2020 02:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34670 * 126.59248 * 2 1 4 4 N 1.34123 * 108.02220 * 180.02562 * 3 2 1 5 5 C 1.30499 * 109.25570 * 0.02562 * 4 3 2 6 6 C 1.50703 * 125.64888 * 180.02562 * 5 4 3 7 7 N 1.46497 * 112.85073 * 126.46617 * 6 5 4 8 8 C 1.34781 * 119.99962 * 300.81468 * 7 6 5 9 9 O 1.21276 * 119.99681 * 353.42439 * 8 7 6 10 10 C 1.50704 * 119.99819 * 173.14296 * 8 7 6 11 11 H 1.08999 * 109.46911 * 60.27445 * 10 8 7 12 12 C 1.52996 * 109.47142 * 300.27798 * 10 8 7 13 13 C 1.50694 * 109.46820 * 180.27709 * 10 8 7 14 14 H 1.08005 * 120.00192 * 36.00101 * 13 10 8 15 15 C 1.37885 * 120.00047 * 216.00067 * 13 10 8 16 16 N 1.31509 * 119.99942 * 174.45309 * 15 13 10 17 17 Si 1.86799 * 119.99682 * 354.45427 * 15 13 10 18 18 H 1.48501 * 109.47126 * 94.08569 * 17 15 13 19 19 H 1.48492 * 109.46924 * 214.08723 * 17 15 13 20 20 H 1.48501 * 109.47218 * 334.09056 * 17 15 13 21 21 C 1.53780 * 113.61098 * 257.65834 * 6 5 4 22 22 C 1.54049 * 86.98623 * 140.02061 * 21 6 5 23 23 C 1.53773 * 113.61595 * 355.26460 * 6 5 4 24 24 N 1.35038 * 108.70037 * 0.26026 * 5 4 3 25 25 H 0.97001 * 126.39931 * 179.74340 * 24 5 4 26 26 H 1.09002 * 109.46785 * 89.97642 * 1 2 3 27 27 H 1.08999 * 109.46995 * 209.97700 * 1 2 3 28 28 H 1.09002 * 109.47131 * 329.97804 * 1 2 3 29 29 H 1.08001 * 125.98653 * 359.97438 * 3 2 1 30 30 H 0.97005 * 119.99878 * 120.81578 * 7 6 5 31 31 H 1.09004 * 109.47454 * 65.07100 * 12 10 8 32 32 H 1.09003 * 109.47180 * 185.07232 * 12 10 8 33 33 H 1.09004 * 109.47320 * 305.07500 * 12 10 8 34 34 H 0.97003 * 119.99379 * 179.97438 * 16 15 13 35 35 H 1.09004 * 113.61859 * 254.61556 * 21 6 5 36 36 H 1.09003 * 113.61635 * 25.51810 * 21 6 5 37 37 H 1.08997 * 113.62373 * 220.02501 * 22 21 6 38 38 H 1.08997 * 113.61041 * 89.11283 * 22 21 6 39 39 H 1.09001 * 113.61423 * 334.48600 * 23 6 5 40 40 H 1.09002 * 113.61577 * 105.39125 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0813 0.0000 4 7 3.5812 0.6541 -0.0006 5 6 3.5968 -0.6508 -0.0015 6 6 4.8319 -1.5144 -0.0018 7 7 4.8380 -2.4987 1.0832 8 6 4.7720 -2.0887 2.3654 9 8 4.8278 -0.9059 2.6274 10 6 4.6225 -3.0997 3.4730 11 1 5.4741 -3.7799 3.4614 12 6 3.3318 -3.8949 3.2668 13 6 4.5669 -2.3869 4.7995 14 1 4.0696 -1.4314 4.8787 15 6 5.1508 -2.9544 5.9122 16 7 5.1984 -2.2854 7.0434 17 14 5.8743 -4.6738 5.8128 18 1 7.3255 -4.5834 5.5110 19 1 5.6809 -5.3679 7.1112 20 1 5.1917 -5.4366 4.7370 21 6 5.1643 -2.1132 -1.3786 22 6 6.6431 -1.8268 -1.0556 23 6 6.1414 -0.7166 -0.1172 24 7 2.3230 -1.0990 -0.0073 25 1 2.0392 -2.0266 -0.0127 26 1 -0.3633 0.0004 -1.0277 27 1 -0.3633 -0.8902 0.5135 28 1 -0.3633 0.8898 0.5142 29 1 1.9865 2.1117 -0.0004 30 1 4.8896 -3.4456 0.8788 31 1 3.4086 -4.4813 2.3511 32 1 3.1774 -4.5630 4.1142 33 1 2.4899 -3.2071 3.1882 34 1 5.6089 -2.6849 7.8262 35 1 4.9316 -3.1749 -1.4608 36 1 4.7787 -1.5285 -2.2138 37 1 7.2121 -1.4544 -1.9075 38 1 7.1428 -2.6446 -0.5364 39 1 6.0224 0.2493 -0.6082 40 1 6.6969 -0.6515 0.8183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001633022981.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:51 Heat of formation + Delta-G solvation = 9.146333 kcal Electronic energy + Delta-G solvation = -22334.537197 eV Core-core repulsion = 19149.608221 eV Total energy + Delta-G solvation = -3184.928976 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.15156 -41.03710 -39.03885 -35.63678 -34.33322 -33.67497 -33.02065 -32.41181 -28.25694 -27.24446 -26.78083 -25.66216 -24.17459 -22.16981 -21.83280 -21.15691 -20.06987 -19.09279 -18.63839 -17.76571 -16.74812 -16.42008 -16.35233 -15.93010 -15.53863 -15.22264 -14.77501 -14.68457 -14.40421 -14.20757 -13.96670 -13.62836 -13.36594 -13.27806 -13.14959 -13.04756 -12.90327 -12.56868 -12.17084 -11.94569 -11.82433 -11.73322 -11.45503 -11.26099 -10.95123 -10.87334 -10.75982 -10.40952 -10.09851 -9.11485 -8.28582 -6.35704 1.04668 1.35344 1.38296 1.50275 1.88404 2.03392 2.16978 2.35276 2.41795 3.08694 3.37738 3.55895 3.68223 3.93344 4.04955 4.13337 4.27547 4.37173 4.38707 4.53622 4.69594 4.70337 4.76672 4.79302 4.81053 4.83923 5.02975 5.06432 5.10133 5.10404 5.14511 5.30427 5.35936 5.48801 5.56479 5.69033 5.85671 6.23306 6.50738 6.65758 6.85717 7.20705 7.26078 7.57914 8.90055 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018255 B = 0.006046 C = 0.005223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.476365 B = 4629.952793 C = 5359.975712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.022 4.022 3 C -0.067 4.067 4 N -0.514 5.514 5 C 0.212 3.788 6 C 0.216 3.784 7 N -0.706 5.706 8 C 0.518 3.482 9 O -0.563 6.563 10 C -0.005 4.005 11 H 0.074 0.926 12 C -0.125 4.125 13 C -0.507 4.507 14 H 0.011 0.989 15 C 0.001 3.999 16 N -0.955 5.955 17 Si 0.951 3.049 18 H -0.271 1.271 19 H -0.286 1.286 20 H -0.214 1.214 21 C -0.105 4.105 22 C -0.123 4.123 23 C -0.133 4.133 24 N -0.552 5.552 25 H 0.427 0.573 26 H 0.094 0.906 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.176 0.824 30 H 0.419 0.581 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.031 0.969 34 H 0.266 0.734 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.380 -7.355 -22.335 24.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.138 4.138 3 C -0.214 4.214 4 N -0.234 5.234 5 C -0.054 4.054 6 C 0.127 3.873 7 N -0.362 5.362 8 C 0.306 3.694 9 O -0.438 6.438 10 C -0.027 4.027 11 H 0.091 0.909 12 C -0.183 4.183 13 C -0.545 4.545 14 H 0.030 0.970 15 C -0.195 4.195 16 N -0.594 5.594 17 Si 0.772 3.228 18 H -0.196 1.196 19 H -0.212 1.212 20 H -0.135 1.135 21 C -0.144 4.144 22 C -0.160 4.160 23 C -0.172 4.172 24 N -0.156 5.156 25 H 0.266 0.734 26 H 0.113 0.887 27 H 0.091 0.909 28 H 0.106 0.894 29 H 0.194 0.806 30 H 0.257 0.743 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.130 0.870 36 H 0.120 0.880 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.633 -5.947 -21.954 23.212 hybrid contribution -0.446 -0.784 1.209 1.508 sum -5.079 -6.731 -20.745 22.393 Atomic orbital electron populations 1.20321 0.84170 1.04213 1.04093 1.21843 0.96093 0.86548 1.09358 1.22467 0.88467 0.99904 1.10592 1.70042 1.23751 1.09678 1.19883 1.23240 0.86111 0.90832 1.05170 1.19681 0.88258 0.89274 0.90125 1.45772 1.76982 1.09852 1.03631 1.21573 0.73724 0.90170 0.83914 1.90661 1.48596 1.20730 1.83825 1.19294 0.98289 0.93911 0.91219 0.90853 1.21829 0.95915 0.98659 1.01871 1.20851 1.35716 1.04922 0.93009 0.97033 1.26196 0.95703 1.03162 0.94484 1.70121 1.46452 1.39999 1.02874 0.85711 0.79215 0.78546 0.79348 1.19608 1.21177 1.13549 1.23244 0.96133 1.02990 0.91995 1.22885 0.96202 0.97709 0.99235 1.23106 0.94847 0.99411 0.99880 1.43001 1.06320 1.09837 1.56432 0.73401 0.88707 0.90867 0.89357 0.80644 0.74251 0.89864 0.92601 0.94947 0.92490 0.87031 0.88005 0.88798 0.88847 0.89623 0.94280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.21 10.44 71.24 0.74 -0.46 16 2 C -0.02 -0.59 7.24 40.95 0.30 -0.30 16 3 C -0.07 -2.23 11.79 83.52 0.98 -1.24 16 4 N -0.51 -20.00 10.47 -188.13 -1.97 -21.97 16 5 C 0.21 7.06 6.08 138.13 0.84 7.90 16 6 C 0.22 6.15 1.02 3.38 0.00 6.16 16 7 N -0.71 -20.95 5.04 -423.93 -2.14 -23.09 16 8 C 0.52 22.66 6.72 87.66 0.59 23.25 16 9 O -0.56 -31.73 14.59 -3.02 -0.04 -31.77 16 10 C -0.01 -0.23 2.18 -12.29 -0.03 -0.26 16 11 H 0.07 2.98 5.58 -2.39 -0.01 2.97 16 12 C -0.12 -4.41 8.78 71.98 0.63 -3.78 16 13 C -0.51 -30.49 8.34 25.60 0.21 -30.28 16 14 H 0.01 0.82 7.64 -2.91 -0.02 0.80 16 15 C 0.00 0.04 5.47 84.66 0.46 0.50 16 16 N -0.95 -62.38 13.96 21.45 0.30 -62.08 16 17 Si 0.95 41.93 26.59 68.60 1.82 43.76 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 19 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.21 -7.72 6.26 99.48 0.62 -7.09 16 21 C -0.11 -1.81 7.36 31.21 0.23 -1.58 16 22 C -0.12 -2.36 8.00 31.21 0.25 -2.11 16 23 C -0.13 -4.13 6.88 31.12 0.21 -3.92 16 24 N -0.55 -15.05 6.15 -174.60 -1.07 -16.12 16 25 H 0.43 8.78 8.96 -92.71 -0.83 7.95 16 26 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.18 5.01 8.06 -2.91 -0.02 4.99 16 30 H 0.42 8.54 8.37 -92.70 -0.78 7.76 16 31 H 0.08 1.99 7.88 -2.38 -0.02 1.98 16 32 H 0.05 2.01 7.38 -2.39 -0.02 1.99 16 33 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 35 H 0.11 1.16 8.09 -2.38 -0.02 1.14 16 36 H 0.10 1.67 8.09 -2.39 -0.02 1.65 16 37 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.09 2.82 7.66 -2.39 -0.02 2.80 16 40 H 0.04 1.50 7.74 -2.39 -0.02 1.48 16 Total: -1.00 -90.27 330.19 1.71 -88.56 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: -0.63 Total: 28.82 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: 5.43 Total: -6.10 kcal Atomic # 7 Polarization: -118.39 SS G_CDS: -4.88 Total: -123.27 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -0.04 Total: -31.77 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 1.82 Total: 43.76 kcal Total: -90.27 1.71 -88.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001633022981.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.707 kcal (2) G-P(sol) polarization free energy of solvation -90.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds