Wall clock time and date at job start Mon Mar 30 2020 02:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34665 * 126.59295 * 2 1 4 4 N 1.34129 * 108.02565 * 180.02562 * 3 2 1 5 5 C 1.30503 * 109.25386 * 359.97438 * 4 3 2 6 6 C 1.50695 * 125.64820 * 179.97438 * 5 4 3 7 7 N 1.46507 * 112.84772 * 235.98123 * 6 5 4 8 8 C 1.34770 * 119.99723 * 65.18135 * 7 6 5 9 9 O 1.21277 * 120.00454 * 355.00492 * 8 7 6 10 10 C 1.50705 * 119.99696 * 175.00080 * 8 7 6 11 11 H 1.08995 * 109.47006 * 299.99918 * 10 8 7 12 12 C 1.52994 * 109.46987 * 60.00244 * 10 8 7 13 13 C 1.50704 * 109.47007 * 180.02562 * 10 8 7 14 14 H 1.07998 * 119.99632 * 0.02562 * 13 10 8 15 15 C 1.37871 * 120.00146 * 179.97438 * 13 10 8 16 16 N 1.31512 * 120.00116 * 180.02562 * 15 13 10 17 17 Si 1.86801 * 119.99805 * 0.02562 * 15 13 10 18 18 H 1.48500 * 109.47352 * 90.00061 * 17 15 13 19 19 H 1.48505 * 109.47265 * 209.99766 * 17 15 13 20 20 H 1.48501 * 109.47130 * 329.99923 * 17 15 13 21 21 C 1.53778 * 113.61819 * 7.17926 * 6 5 4 22 22 C 1.54050 * 86.98714 * 140.01698 * 21 6 5 23 23 C 1.53778 * 87.07990 * 334.57081 * 22 21 6 24 24 N 1.35047 * 108.69801 * 0.26304 * 5 4 3 25 25 H 0.97003 * 126.39602 * 179.73289 * 24 5 4 26 26 H 1.09000 * 109.47526 * 89.97511 * 1 2 3 27 27 H 1.09006 * 109.47326 * 209.97420 * 1 2 3 28 28 H 1.09003 * 109.47223 * 329.97568 * 1 2 3 29 29 H 1.08003 * 125.99004 * 0.02562 * 3 2 1 30 30 H 0.97005 * 119.99627 * 245.17844 * 7 6 5 31 31 H 1.09006 * 109.46779 * 179.97438 * 12 10 8 32 32 H 1.09002 * 109.47080 * 299.99528 * 12 10 8 33 33 H 1.08995 * 109.47514 * 59.99985 * 12 10 8 34 34 H 0.97008 * 119.99810 * 179.97438 * 16 15 13 35 35 H 1.09001 * 113.61477 * 254.61602 * 21 6 5 36 36 H 1.09001 * 113.61461 * 25.51598 * 21 6 5 37 37 H 1.08995 * 113.62084 * 220.02007 * 22 21 6 38 38 H 1.09007 * 113.68633 * 89.12289 * 22 21 6 39 39 H 1.09003 * 113.61321 * 270.88097 * 23 22 21 40 40 H 1.09001 * 113.62119 * 139.97342 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3097 1.0812 0.0000 4 7 3.5812 0.6541 -0.0006 5 6 3.5968 -0.6508 -0.0004 6 6 4.8318 -1.5143 -0.0014 7 7 4.8641 -2.4595 -1.1203 8 6 4.9504 -2.0032 -2.3855 9 8 4.9101 -0.8111 -2.6043 10 6 5.0972 -2.9746 -3.5284 11 1 6.0091 -3.5567 -3.3956 12 6 3.8910 -3.9153 -3.5562 13 6 5.1720 -2.2142 -4.8274 14 1 5.1189 -1.1355 -4.8254 15 6 5.3091 -2.8955 -6.0181 16 7 5.3748 -2.2319 -7.1517 17 14 5.4015 -4.7612 -6.0213 18 1 4.0329 -5.3245 -6.1433 19 1 6.2272 -5.2140 -7.1697 20 1 6.0180 -5.2285 -4.7537 21 6 6.1379 -0.7217 0.1733 22 6 6.6159 -1.8674 1.0855 23 6 5.1319 -2.1619 1.3608 24 7 2.3229 -1.0990 -0.0055 25 1 2.0391 -2.0266 -0.0102 26 1 -0.3634 0.0004 -1.0276 27 1 -0.3634 -0.8903 0.5135 28 1 -0.3634 0.8898 0.5142 29 1 1.9864 2.1117 0.0004 30 1 4.8234 -3.4137 -0.9505 31 1 3.9970 -4.6175 -4.3832 32 1 3.8374 -4.4653 -2.6167 33 1 2.9791 -3.3332 -3.6890 34 1 5.4717 -2.7113 -7.9894 35 1 6.7154 -0.6236 -0.7459 36 1 6.0069 0.2262 0.6953 37 1 7.1637 -1.5267 1.9640 38 1 7.1280 -2.6678 0.5514 39 1 4.7263 -1.6070 2.2068 40 1 4.8976 -3.2257 1.3996 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001633022982.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:54 Heat of formation + Delta-G solvation = 44.771368 kcal Electronic energy + Delta-G solvation = -22286.607886 eV Core-core repulsion = 19103.223727 eV Total energy + Delta-G solvation = -3183.384158 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.99339 -39.71691 -37.62066 -33.83134 -32.79162 -32.50419 -31.52598 -30.96258 -27.24396 -25.76962 -25.17318 -24.49944 -22.76570 -21.02875 -20.71455 -19.64220 -18.84058 -17.53134 -16.73991 -16.17428 -15.50711 -15.14711 -14.95404 -14.70391 -14.01595 -13.92192 -13.55833 -13.27830 -13.14430 -12.85007 -12.68794 -12.53370 -12.34574 -12.30260 -11.84365 -11.58677 -11.13261 -10.92535 -10.84576 -10.59395 -10.41843 -10.30882 -9.73681 -9.66802 -9.65998 -9.11359 -8.73710 -8.71473 -8.58606 -7.95877 -6.05534 -4.05865 2.17560 3.20027 3.21030 3.27366 3.27880 3.34274 3.56585 3.67250 4.35938 4.46329 4.56111 4.66501 4.93109 4.98122 5.09782 5.21383 5.23536 5.46774 5.52674 5.56299 5.74441 5.77747 5.79010 5.83225 5.87402 6.02910 6.10488 6.24913 6.31289 6.36658 6.40113 6.44159 6.67033 6.92036 7.01877 7.11798 7.51529 7.55133 8.06741 8.38125 8.54563 9.09513 9.17069 9.53069 11.07509 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018439 B = 0.005833 C = 0.005116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.191513 B = 4798.830439 C = 5471.482700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.036 4.036 3 C -0.025 4.025 4 N -0.467 5.467 5 C 0.230 3.770 6 C 0.229 3.771 7 N -0.732 5.732 8 C 0.524 3.476 9 O -0.502 6.502 10 C -0.002 4.002 11 H 0.052 0.948 12 C -0.144 4.144 13 C -0.505 4.505 14 H 0.093 0.907 15 C 0.070 3.930 16 N -0.895 5.895 17 Si 0.884 3.116 18 H -0.279 1.279 19 H -0.295 1.295 20 H -0.267 1.267 21 C -0.116 4.116 22 C -0.140 4.140 23 C -0.131 4.131 24 N -0.560 5.560 25 H 0.413 0.587 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.165 0.835 30 H 0.396 0.604 31 H 0.049 0.951 32 H 0.031 0.969 33 H 0.055 0.945 34 H 0.264 0.736 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.792 -3.264 19.425 20.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.151 4.151 3 C -0.174 4.174 4 N -0.186 5.186 5 C -0.035 4.035 6 C 0.140 3.860 7 N -0.389 5.389 8 C 0.312 3.688 9 O -0.373 6.373 10 C -0.024 4.024 11 H 0.070 0.930 12 C -0.202 4.202 13 C -0.543 4.543 14 H 0.111 0.889 15 C -0.131 4.131 16 N -0.533 5.533 17 Si 0.714 3.286 18 H -0.207 1.207 19 H -0.222 1.222 20 H -0.193 1.193 21 C -0.155 4.155 22 C -0.177 4.177 23 C -0.170 4.170 24 N -0.162 5.162 25 H 0.249 0.751 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.098 0.902 29 H 0.183 0.817 30 H 0.231 0.769 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.117 0.883 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.112 0.888 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.082 -1.795 19.002 19.751 hybrid contribution -1.047 -2.495 -0.296 2.722 sum -6.130 -4.290 18.706 20.147 Atomic orbital electron populations 1.20169 0.87468 1.02811 1.02691 1.21207 0.94234 0.87356 1.12342 1.22060 0.88537 0.98338 1.08457 1.70143 1.21988 1.08004 1.18458 1.23066 0.84844 0.91019 1.04569 1.19331 0.89381 0.89593 0.87710 1.46178 1.78965 1.08521 1.05234 1.21334 0.74172 0.90763 0.82493 1.90668 1.45865 1.17138 1.83611 1.19313 0.95633 0.93664 0.93812 0.92986 1.22125 1.00180 0.98945 0.98931 1.20939 1.49962 0.96168 0.87219 0.88859 1.24982 0.94822 0.97857 0.95482 1.69886 1.50048 1.35592 0.97761 0.86925 0.77553 0.86794 0.77312 1.20655 1.22245 1.19269 1.23105 0.93898 0.97782 1.00680 1.22906 0.95218 0.99447 1.00142 1.23242 0.97689 1.00755 0.95301 1.43014 1.07019 1.08988 1.57183 0.75079 0.91010 0.92120 0.90182 0.81728 0.76879 0.93212 0.95045 0.92620 0.92567 0.90086 0.88258 0.90894 0.89743 0.88824 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.44 36.00 0.38 -0.32 16 2 C -0.04 -0.49 7.24 -81.60 -0.59 -1.08 16 3 C -0.03 -0.40 11.79 -17.81 -0.21 -0.61 16 4 N -0.47 -8.66 10.50 -10.82 -0.11 -8.78 16 5 C 0.23 3.81 6.18 -155.41 -0.96 2.85 16 6 C 0.23 3.38 1.02 -132.15 -0.13 3.24 16 7 N -0.73 -11.59 5.07 -47.92 -0.24 -11.83 16 8 C 0.52 11.36 6.64 -10.99 -0.07 11.29 16 9 O -0.50 -13.18 14.24 5.56 0.08 -13.10 16 10 C 0.00 -0.06 2.24 -92.92 -0.21 -0.27 16 11 H 0.05 1.17 7.20 -51.93 -0.37 0.79 16 12 C -0.14 -2.90 8.57 37.15 0.32 -2.58 16 13 C -0.50 -14.68 8.96 -34.44 -0.31 -14.99 16 14 H 0.09 3.13 7.00 -52.49 -0.37 2.76 16 15 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 16 N -0.89 -27.89 13.96 55.43 0.77 -27.12 16 17 Si 0.88 21.27 24.37 -169.99 -4.14 17.13 16 18 H -0.28 -6.51 6.87 56.52 0.39 -6.12 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.27 -5.94 6.53 56.52 0.37 -5.58 16 21 C -0.12 -1.75 6.86 -25.78 -0.18 -1.92 16 22 C -0.14 -1.53 8.00 -25.78 -0.21 -1.73 16 23 C -0.13 -1.36 7.36 -25.92 -0.19 -1.55 16 24 N -0.56 -7.85 6.15 -6.54 -0.04 -7.89 16 25 H 0.41 4.64 8.96 -40.82 -0.37 4.28 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.17 2.20 8.06 -52.48 -0.42 1.78 16 30 H 0.40 4.97 7.94 -40.82 -0.32 4.65 16 31 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 32 H 0.03 0.48 7.46 -51.93 -0.39 0.09 16 33 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 35 H 0.08 1.46 7.56 -51.93 -0.39 1.06 16 36 H 0.10 1.52 7.70 -51.93 -0.40 1.12 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 39 H 0.09 0.93 8.09 -51.93 -0.42 0.51 16 40 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 LS Contribution 324.04 15.07 4.88 4.88 Total: -1.00 -36.46 324.04 -7.03 -43.49 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -5.76 Total: 8.96 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -2.46 Total: -5.74 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 0.38 Total: -55.62 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.08 Total: -13.10 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.14 Total: 17.13 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -36.46 -7.03 -43.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001633022982.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.260 kcal (2) G-P(sol) polarization free energy of solvation -36.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds