Wall clock time and date at job start Mon Mar 30 2020 02:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34665 * 126.59295 * 2 1 4 4 N 1.34129 * 108.02565 * 180.02562 * 3 2 1 5 5 C 1.30503 * 109.25386 * 359.97438 * 4 3 2 6 6 C 1.50695 * 125.64820 * 179.97438 * 5 4 3 7 7 N 1.46507 * 112.84772 * 235.98123 * 6 5 4 8 8 C 1.34770 * 119.99723 * 65.18135 * 7 6 5 9 9 O 1.21277 * 120.00454 * 355.00492 * 8 7 6 10 10 C 1.50705 * 119.99696 * 175.00080 * 8 7 6 11 11 H 1.08995 * 109.47006 * 299.99918 * 10 8 7 12 12 C 1.52994 * 109.46987 * 60.00244 * 10 8 7 13 13 C 1.50704 * 109.47007 * 180.02562 * 10 8 7 14 14 H 1.07998 * 119.99632 * 0.02562 * 13 10 8 15 15 C 1.37871 * 120.00146 * 179.97438 * 13 10 8 16 16 N 1.31512 * 120.00116 * 180.02562 * 15 13 10 17 17 Si 1.86801 * 119.99805 * 0.02562 * 15 13 10 18 18 H 1.48500 * 109.47352 * 90.00061 * 17 15 13 19 19 H 1.48505 * 109.47265 * 209.99766 * 17 15 13 20 20 H 1.48501 * 109.47130 * 329.99923 * 17 15 13 21 21 C 1.53778 * 113.61819 * 7.17926 * 6 5 4 22 22 C 1.54050 * 86.98714 * 140.01698 * 21 6 5 23 23 C 1.53778 * 87.07990 * 334.57081 * 22 21 6 24 24 N 1.35047 * 108.69801 * 0.26304 * 5 4 3 25 25 H 0.97003 * 126.39602 * 179.73289 * 24 5 4 26 26 H 1.09000 * 109.47526 * 89.97511 * 1 2 3 27 27 H 1.09006 * 109.47326 * 209.97420 * 1 2 3 28 28 H 1.09003 * 109.47223 * 329.97568 * 1 2 3 29 29 H 1.08003 * 125.99004 * 0.02562 * 3 2 1 30 30 H 0.97005 * 119.99627 * 245.17844 * 7 6 5 31 31 H 1.09006 * 109.46779 * 179.97438 * 12 10 8 32 32 H 1.09002 * 109.47080 * 299.99528 * 12 10 8 33 33 H 1.08995 * 109.47514 * 59.99985 * 12 10 8 34 34 H 0.97008 * 119.99810 * 179.97438 * 16 15 13 35 35 H 1.09001 * 113.61477 * 254.61602 * 21 6 5 36 36 H 1.09001 * 113.61461 * 25.51598 * 21 6 5 37 37 H 1.08995 * 113.62084 * 220.02007 * 22 21 6 38 38 H 1.09007 * 113.68633 * 89.12289 * 22 21 6 39 39 H 1.09003 * 113.61321 * 270.88097 * 23 22 21 40 40 H 1.09001 * 113.62119 * 139.97342 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3097 1.0812 0.0000 4 7 3.5812 0.6541 -0.0006 5 6 3.5968 -0.6508 -0.0004 6 6 4.8318 -1.5143 -0.0014 7 7 4.8641 -2.4595 -1.1203 8 6 4.9504 -2.0032 -2.3855 9 8 4.9101 -0.8111 -2.6043 10 6 5.0972 -2.9746 -3.5284 11 1 6.0091 -3.5567 -3.3956 12 6 3.8910 -3.9153 -3.5562 13 6 5.1720 -2.2142 -4.8274 14 1 5.1189 -1.1355 -4.8254 15 6 5.3091 -2.8955 -6.0181 16 7 5.3748 -2.2319 -7.1517 17 14 5.4015 -4.7612 -6.0213 18 1 4.0329 -5.3245 -6.1433 19 1 6.2272 -5.2140 -7.1697 20 1 6.0180 -5.2285 -4.7537 21 6 6.1379 -0.7217 0.1733 22 6 6.6159 -1.8674 1.0855 23 6 5.1319 -2.1619 1.3608 24 7 2.3229 -1.0990 -0.0055 25 1 2.0391 -2.0266 -0.0102 26 1 -0.3634 0.0004 -1.0276 27 1 -0.3634 -0.8903 0.5135 28 1 -0.3634 0.8898 0.5142 29 1 1.9864 2.1117 0.0004 30 1 4.8234 -3.4137 -0.9505 31 1 3.9970 -4.6175 -4.3832 32 1 3.8374 -4.4653 -2.6167 33 1 2.9791 -3.3332 -3.6890 34 1 5.4717 -2.7113 -7.9894 35 1 6.7154 -0.6236 -0.7459 36 1 6.0069 0.2262 0.6953 37 1 7.1637 -1.5267 1.9640 38 1 7.1280 -2.6678 0.5514 39 1 4.7263 -1.6070 2.2068 40 1 4.8976 -3.2257 1.3996 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001633022982.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:53 Heat of formation + Delta-G solvation = 15.856552 kcal Electronic energy + Delta-G solvation = -22287.861726 eV Core-core repulsion = 19103.223727 eV Total energy + Delta-G solvation = -3184.637999 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.14624 -41.09073 -39.06186 -35.79874 -34.34874 -33.67982 -33.03358 -32.41750 -28.26971 -27.14631 -26.80964 -25.74711 -24.37565 -22.17486 -21.82155 -21.24155 -20.07579 -18.82604 -18.67650 -17.78344 -16.82786 -16.58054 -16.40573 -15.94288 -15.55931 -15.29714 -14.89785 -14.69100 -14.56771 -14.20858 -14.04366 -13.65544 -13.42622 -13.33601 -13.25223 -12.92142 -12.84659 -12.56110 -12.16950 -11.98424 -11.82413 -11.48235 -11.44158 -11.24485 -10.94075 -10.86770 -10.79141 -10.42882 -10.15864 -9.11486 -8.28403 -6.36889 1.04649 1.30778 1.38623 1.50098 1.85716 2.00838 2.17356 2.32932 2.41414 3.05028 3.36123 3.56349 3.67288 3.90485 4.03476 4.09583 4.28343 4.34439 4.39944 4.52269 4.57152 4.69930 4.75464 4.75860 4.77863 4.80872 4.98908 5.02770 5.06616 5.09957 5.13118 5.29380 5.36179 5.42541 5.51329 5.67010 5.85554 6.24401 6.51560 6.67306 6.84423 7.21647 7.24863 7.54252 8.89867 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018439 B = 0.005833 C = 0.005116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.191513 B = 4798.830439 C = 5471.482700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.022 4.022 3 C -0.067 4.067 4 N -0.514 5.514 5 C 0.211 3.789 6 C 0.216 3.784 7 N -0.704 5.704 8 C 0.527 3.473 9 O -0.562 6.562 10 C -0.006 4.006 11 H 0.072 0.928 12 C -0.138 4.138 13 C -0.521 4.521 14 H 0.022 0.978 15 C 0.003 3.997 16 N -0.956 5.956 17 Si 0.964 3.036 18 H -0.260 1.260 19 H -0.301 1.301 20 H -0.225 1.225 21 C -0.132 4.132 22 C -0.123 4.123 23 C -0.105 4.105 24 N -0.552 5.552 25 H 0.427 0.573 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.176 0.824 30 H 0.419 0.581 31 H 0.046 0.954 32 H 0.091 0.909 33 H 0.040 0.960 34 H 0.267 0.733 35 H 0.038 0.962 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.917 -7.720 22.515 24.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.138 4.138 3 C -0.215 4.215 4 N -0.234 5.234 5 C -0.054 4.054 6 C 0.126 3.874 7 N -0.360 5.360 8 C 0.315 3.685 9 O -0.438 6.438 10 C -0.028 4.028 11 H 0.089 0.911 12 C -0.195 4.195 13 C -0.560 4.560 14 H 0.040 0.960 15 C -0.193 4.193 16 N -0.596 5.596 17 Si 0.788 3.212 18 H -0.186 1.186 19 H -0.229 1.229 20 H -0.148 1.148 21 C -0.171 4.171 22 C -0.160 4.160 23 C -0.143 4.143 24 N -0.156 5.156 25 H 0.267 0.733 26 H 0.090 0.910 27 H 0.104 0.896 28 H 0.117 0.883 29 H 0.193 0.807 30 H 0.258 0.742 31 H 0.064 0.936 32 H 0.110 0.890 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.057 0.943 36 H 0.105 0.895 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.121 0.879 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.224 -6.304 22.173 23.877 hybrid contribution -0.703 -0.891 -1.274 1.706 sum -6.928 -7.195 20.899 23.163 Atomic orbital electron populations 1.20318 0.84151 1.05033 1.03274 1.21832 0.96064 0.86535 1.09396 1.22474 0.88494 0.99917 1.10571 1.70057 1.23750 1.09752 1.19793 1.23298 0.86151 0.90835 1.05132 1.19716 0.88440 0.89868 0.89336 1.45702 1.76722 1.09940 1.03636 1.21116 0.73724 0.89515 0.84167 1.90666 1.48855 1.19503 1.84776 1.19262 0.98068 0.94078 0.91361 0.91080 1.22014 0.97401 0.98135 1.01993 1.21093 1.50232 0.93665 0.90964 0.95970 1.26109 0.93863 1.05023 0.94341 1.70103 1.51905 1.38662 0.98893 0.85657 0.78687 0.77998 0.78881 1.18604 1.22861 1.14833 1.23134 0.94709 0.99343 0.99915 1.22885 0.96248 0.97267 0.99641 1.23191 0.96315 1.02648 0.92142 1.43002 1.06292 1.09848 1.56485 0.73347 0.91034 0.89633 0.88292 0.80704 0.74235 0.93570 0.88995 0.94102 0.92444 0.94323 0.89490 0.88750 0.88882 0.87877 0.87009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.15 10.44 71.23 0.74 -0.40 16 2 C -0.02 -0.57 7.24 40.95 0.30 -0.28 16 3 C -0.07 -2.20 11.79 83.52 0.98 -1.22 16 4 N -0.51 -19.82 10.50 -188.13 -1.98 -21.79 16 5 C 0.21 6.92 6.18 138.12 0.85 7.77 16 6 C 0.22 6.04 1.02 3.38 0.00 6.04 16 7 N -0.70 -20.64 5.07 -423.92 -2.15 -22.79 16 8 C 0.53 22.92 6.64 87.66 0.58 23.50 16 9 O -0.56 -31.40 14.24 -3.02 -0.04 -31.44 16 10 C -0.01 -0.27 2.24 -12.29 -0.03 -0.30 16 11 H 0.07 2.96 7.20 -2.39 -0.02 2.95 16 12 C -0.14 -5.03 8.57 71.98 0.62 -4.42 16 13 C -0.52 -31.69 8.96 25.60 0.23 -31.46 16 14 H 0.02 1.61 7.00 -2.91 -0.02 1.59 16 15 C 0.00 0.16 5.45 84.65 0.46 0.62 16 16 N -0.96 -62.50 13.96 21.44 0.30 -62.21 16 17 Si 0.96 42.88 24.37 68.60 1.67 44.56 16 18 H -0.26 -10.77 6.87 99.48 0.68 -10.08 16 19 H -0.30 -13.59 7.11 99.48 0.71 -12.89 16 20 H -0.23 -8.48 6.53 99.48 0.65 -7.83 16 21 C -0.13 -4.04 6.86 31.21 0.21 -3.83 16 22 C -0.12 -2.33 8.00 31.21 0.25 -2.08 16 23 C -0.10 -1.74 7.36 31.12 0.23 -1.51 16 24 N -0.55 -14.57 6.15 -174.61 -1.07 -15.64 16 25 H 0.43 8.27 8.96 -92.71 -0.83 7.44 16 26 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.18 4.93 8.06 -2.91 -0.02 4.91 16 30 H 0.42 8.38 7.94 -92.70 -0.74 7.65 16 31 H 0.05 1.73 3.27 -2.38 -0.01 1.72 16 32 H 0.09 2.24 7.46 -2.39 -0.02 2.22 16 33 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.27 16.12 8.31 -92.70 -0.77 15.35 16 35 H 0.04 1.48 7.56 -2.39 -0.02 1.46 16 36 H 0.09 2.82 7.70 -2.39 -0.02 2.80 16 37 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.10 1.62 8.09 -2.39 -0.02 1.60 16 40 H 0.11 1.10 8.09 -2.39 -0.02 1.09 16 Total: -1.00 -90.46 324.04 1.59 -88.87 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: -0.58 Total: 28.01 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: 5.44 Total: -7.56 kcal Atomic # 7 Polarization: -117.53 SS G_CDS: -4.90 Total: -122.43 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -0.04 Total: -31.44 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 1.67 Total: 44.56 kcal Total: -90.46 1.59 -88.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001633022982.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.723 kcal (2) G-P(sol) polarization free energy of solvation -90.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds