Wall clock time and date at job start Mon Mar 30 2020 01:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34659 * 125.80848 * 2 1 4 4 H 0.96996 * 124.84608 * 0.02562 * 3 2 1 5 5 C 1.36445 * 110.30153 * 180.29938 * 3 2 1 6 6 C 1.34493 * 108.85357 * 359.74375 * 5 3 2 7 7 C 1.36773 * 125.79783 * 179.86834 * 2 1 3 8 8 C 1.47266 * 126.94293 * 359.97438 * 7 2 1 9 9 O 1.21631 * 119.99878 * 359.70894 * 8 7 2 10 10 N 1.34773 * 119.99956 * 179.71314 * 8 7 2 11 11 C 1.46506 * 119.99969 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47237 * 179.72043 * 11 10 8 13 13 H 1.09000 * 109.46751 * 64.99774 * 12 11 10 14 14 N 1.46496 * 109.47078 * 304.99765 * 12 11 10 15 15 C 1.36939 * 119.99812 * 154.99484 * 14 12 11 16 16 H 1.07998 * 120.00031 * 0.02562 * 15 14 12 17 17 C 1.38818 * 120.00155 * 179.97438 * 15 14 12 18 18 N 1.31620 * 119.99687 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99946 * 180.02562 * 17 15 14 20 20 H 1.48509 * 109.46574 * 90.00678 * 19 17 15 21 21 H 1.48498 * 109.46954 * 209.99820 * 19 17 15 22 22 H 1.48496 * 109.47655 * 330.00561 * 19 17 15 23 23 C 1.52994 * 109.47095 * 184.99775 * 12 11 10 24 24 C 1.53011 * 117.50014 * 248.74736 * 23 12 11 25 25 C 1.53002 * 117.49791 * 180.08845 * 23 12 11 26 26 H 1.09006 * 109.46866 * 270.13816 * 1 2 3 27 27 H 1.09008 * 109.46827 * 30.12850 * 1 2 3 28 28 H 1.08990 * 109.47444 * 150.13321 * 1 2 3 29 29 H 1.07999 * 125.57588 * 179.77302 * 5 3 2 30 30 H 1.08002 * 126.83040 * 180.02562 * 6 5 3 31 31 H 0.97005 * 120.00161 * 359.72135 * 10 8 7 32 32 H 1.09001 * 109.46512 * 299.72412 * 11 10 8 33 33 H 1.08998 * 109.47174 * 59.71534 * 11 10 8 34 34 H 0.96996 * 120.00496 * 335.00043 * 14 12 11 35 35 H 0.96995 * 119.99923 * 180.02562 * 18 17 15 36 36 H 1.09001 * 115.55265 * 34.41319 * 23 12 11 37 37 H 1.09000 * 117.49671 * 0.02562 * 24 23 12 38 38 H 1.08997 * 117.49621 * 145.02119 * 24 23 12 39 39 H 1.09003 * 117.49834 * 214.97943 * 25 23 12 40 40 H 1.09000 * 117.50079 * 359.97438 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2948 1.0921 0.0000 4 1 1.9735 2.0073 0.0004 5 6 3.6096 0.7273 -0.0067 6 6 3.6881 -0.6154 -0.0054 7 6 2.3070 -1.1093 0.0025 8 6 1.8701 -2.5157 0.0063 9 8 0.6837 -2.7839 0.0128 10 7 2.7847 -3.5055 0.0027 11 6 2.3500 -4.9046 0.0058 12 6 3.5762 -5.8196 -0.0064 13 1 4.1359 -5.6894 0.9198 14 7 4.4305 -5.4760 -1.1457 15 6 5.7701 -5.7574 -1.1064 16 1 6.1967 -6.2331 -0.2356 17 6 6.5797 -5.4324 -2.1862 18 7 6.0597 -4.8532 -3.2476 19 14 8.4069 -5.8169 -2.1328 20 1 8.6429 -7.1759 -2.6833 21 1 9.1468 -4.8184 -2.9455 22 1 8.8834 -5.7624 -0.7274 23 6 3.1243 -7.2762 -0.1288 24 6 3.3312 -8.1845 1.0851 25 6 4.2109 -8.3530 -0.1563 26 1 -0.3633 0.0025 1.0277 27 1 -0.3633 0.8889 -0.5159 28 1 -0.3634 -0.8911 -0.5117 29 1 4.4499 1.4057 -0.0117 30 1 4.5889 -1.2112 -0.0092 31 1 3.7308 -3.2916 -0.0065 32 1 1.7600 -5.0996 0.9013 33 1 1.7431 -5.0985 -0.8785 34 1 4.0475 -5.0491 -1.9279 35 1 6.6253 -4.6264 -4.0023 36 1 2.2348 -7.4430 -0.7363 37 1 3.7889 -7.7441 1.9709 38 1 2.5781 -8.9490 1.2757 39 1 4.0361 -9.2284 -0.7818 40 1 5.2477 -8.0237 -0.0877 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661117122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:40 Heat of formation + Delta-G solvation = 37.740997 kcal Electronic energy + Delta-G solvation = -21360.493588 eV Core-core repulsion = 18176.804570 eV Total energy + Delta-G solvation = -3183.689018 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.07096 -38.71650 -37.35803 -34.49931 -33.28497 -31.48192 -31.25972 -30.46086 -27.95485 -26.18881 -23.87468 -22.78434 -21.67794 -21.33959 -20.41960 -19.78959 -18.87763 -17.57399 -17.17540 -15.69639 -15.36209 -15.13997 -14.87685 -14.42890 -14.17104 -13.77790 -13.49155 -13.28419 -13.09805 -12.92126 -12.71521 -12.56543 -12.46174 -11.93816 -11.45791 -11.29665 -11.08463 -10.83476 -10.81839 -10.64279 -10.09023 -9.88448 -9.58146 -9.34355 -9.22235 -8.93254 -8.74118 -8.40037 -8.00877 -6.99163 -5.76805 -3.05967 1.97855 2.59711 3.20272 3.42094 3.47770 3.49298 3.93236 4.00544 4.46570 4.63554 4.91682 5.09001 5.25777 5.31583 5.43502 5.55004 5.58033 5.62053 5.66236 5.70853 5.85175 5.98051 6.03185 6.04842 6.11453 6.14563 6.24920 6.35092 6.52112 6.60277 6.68810 6.84409 6.90168 7.02540 7.04705 7.14766 7.51477 7.69176 8.23702 8.40059 8.87065 9.52137 10.07590 10.43901 11.45009 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014889 B = 0.005285 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.192138 B = 5296.530772 C = 6804.517806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.096 3.904 3 N -0.556 5.556 4 H 0.412 0.588 5 C -0.025 4.025 6 C -0.158 4.158 7 C -0.228 4.228 8 C 0.587 3.413 9 O -0.568 6.568 10 N -0.708 5.708 11 C 0.121 3.879 12 C 0.193 3.807 13 H 0.054 0.946 14 N -0.716 5.716 15 C -0.236 4.236 16 H 0.070 0.930 17 C -0.010 4.010 18 N -0.928 5.928 19 Si 0.902 3.098 20 H -0.291 1.291 21 H -0.293 1.293 22 H -0.282 1.282 23 C -0.158 4.158 24 C -0.197 4.197 25 C -0.157 4.157 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.101 0.899 29 H 0.167 0.833 30 H 0.149 0.851 31 H 0.410 0.590 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.386 0.614 35 H 0.255 0.745 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.485 9.026 8.074 14.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.022 4.022 3 N -0.152 5.152 4 H 0.248 0.752 5 C -0.152 4.152 6 C -0.182 4.182 7 C -0.238 4.238 8 C 0.376 3.624 9 O -0.449 6.449 10 N -0.358 5.358 11 C -0.003 4.003 12 C 0.082 3.918 13 H 0.072 0.928 14 N -0.357 5.357 15 C -0.367 4.367 16 H 0.088 0.912 17 C -0.206 4.206 18 N -0.576 5.576 19 Si 0.733 3.267 20 H -0.218 1.218 21 H -0.219 1.219 22 H -0.208 1.208 23 C -0.180 4.180 24 C -0.234 4.234 25 C -0.194 4.194 26 H 0.092 0.908 27 H 0.078 0.922 28 H 0.120 0.880 29 H 0.185 0.815 30 H 0.167 0.833 31 H 0.246 0.754 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.220 0.780 35 H 0.065 0.935 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.113 8.917 8.110 14.529 hybrid contribution 1.454 0.317 -0.486 1.565 sum -6.659 9.233 7.624 13.701 Atomic orbital electron populations 1.20531 0.87231 1.04002 1.03123 1.20289 0.93569 0.85720 1.02613 1.41545 1.06296 1.08137 1.59251 0.75188 1.21686 0.85482 0.96520 1.11469 1.22196 0.96224 0.93661 1.06141 1.20226 0.93224 0.92298 1.18060 1.17326 0.85282 0.84153 0.75679 1.90675 1.16823 1.84668 1.52767 1.45737 1.10526 1.05622 1.73945 1.21539 0.97146 0.80287 1.01351 1.20057 0.89862 0.89038 0.92846 0.92773 1.42445 1.04990 1.71633 1.16607 1.19161 0.84036 1.32875 1.00590 0.91189 1.24709 0.97780 1.01547 0.96558 1.69666 1.34586 1.46938 1.06420 0.86279 0.85742 0.77525 0.77158 1.21818 1.21905 1.20813 1.23041 1.00186 0.94723 1.00038 1.22960 1.03971 1.03575 0.92932 1.22778 0.97905 0.99682 0.99005 0.90773 0.92234 0.87992 0.81524 0.83321 0.75376 0.91841 0.91976 0.77997 0.93547 0.89151 0.89562 0.90138 0.90279 0.87744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.05 9.88 36.00 0.36 -0.69 16 2 C 0.10 1.29 7.17 -81.88 -0.59 0.70 16 3 N -0.56 -5.83 5.90 -9.11 -0.05 -5.88 16 4 H 0.41 2.74 8.96 -40.82 -0.37 2.38 16 5 C -0.02 -0.29 11.89 -16.82 -0.20 -0.49 16 6 C -0.16 -2.31 10.56 -37.50 -0.40 -2.71 16 7 C -0.23 -3.72 6.29 -103.35 -0.65 -4.37 16 8 C 0.59 10.91 7.81 -12.59 -0.10 10.81 16 9 O -0.57 -11.54 14.82 5.25 0.08 -11.46 16 10 N -0.71 -12.89 5.38 -61.43 -0.33 -13.23 16 11 C 0.12 2.19 5.22 -4.04 -0.02 2.17 16 12 C 0.19 3.69 2.70 -67.94 -0.18 3.50 16 13 H 0.05 1.05 7.84 -51.93 -0.41 0.64 16 14 N -0.72 -16.68 4.54 -53.43 -0.24 -16.92 16 15 C -0.24 -6.05 8.63 -15.06 -0.13 -6.18 16 16 H 0.07 1.76 6.91 -52.49 -0.36 1.40 16 17 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 18 N -0.93 -27.03 13.06 55.49 0.72 -26.30 16 19 Si 0.90 21.62 29.55 -169.99 -5.02 16.60 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 C -0.16 -2.83 5.36 -90.62 -0.49 -3.31 16 24 C -0.20 -3.05 10.18 -26.68 -0.27 -3.32 16 25 C -0.16 -2.82 9.78 -26.69 -0.26 -3.08 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.51 8.14 -51.92 -0.42 0.08 16 28 H 0.10 1.42 6.47 -51.93 -0.34 1.08 16 29 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.15 2.17 7.70 -52.49 -0.40 1.76 16 31 H 0.41 7.58 7.26 -40.82 -0.30 7.28 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.39 9.92 7.80 -40.82 -0.32 9.60 16 35 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.09 1.59 8.11 -51.93 -0.42 1.16 16 37 H 0.09 1.29 8.05 -51.93 -0.42 0.87 16 38 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.10 2.10 6.23 -51.93 -0.32 1.77 16 LS Contribution 336.08 15.07 5.06 5.06 Total: -1.00 -31.15 336.08 -8.56 -39.71 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: -5.75 Total: 19.75 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -3.02 Total: -7.32 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: 0.10 Total: -62.33 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.08 Total: -11.46 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.15 -8.56 -39.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661117122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.450 kcal (2) G-P(sol) polarization free energy of solvation -31.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds