Wall clock time and date at job start Mon Mar 30 2020 01:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34659 * 125.80848 * 2 1 4 4 H 0.96996 * 124.84608 * 0.02562 * 3 2 1 5 5 C 1.36445 * 110.30153 * 180.29938 * 3 2 1 6 6 C 1.34493 * 108.85357 * 359.74375 * 5 3 2 7 7 C 1.36773 * 125.79783 * 179.86834 * 2 1 3 8 8 C 1.47266 * 126.94293 * 359.97438 * 7 2 1 9 9 O 1.21631 * 119.99878 * 359.70894 * 8 7 2 10 10 N 1.34773 * 119.99956 * 179.71314 * 8 7 2 11 11 C 1.46506 * 119.99969 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47237 * 179.72043 * 11 10 8 13 13 H 1.09000 * 109.46751 * 64.99774 * 12 11 10 14 14 N 1.46496 * 109.47078 * 304.99765 * 12 11 10 15 15 C 1.36939 * 119.99812 * 154.99484 * 14 12 11 16 16 H 1.07998 * 120.00031 * 0.02562 * 15 14 12 17 17 C 1.38818 * 120.00155 * 179.97438 * 15 14 12 18 18 N 1.31620 * 119.99687 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99946 * 180.02562 * 17 15 14 20 20 H 1.48509 * 109.46574 * 90.00678 * 19 17 15 21 21 H 1.48498 * 109.46954 * 209.99820 * 19 17 15 22 22 H 1.48496 * 109.47655 * 330.00561 * 19 17 15 23 23 C 1.52994 * 109.47095 * 184.99775 * 12 11 10 24 24 C 1.53011 * 117.50014 * 248.74736 * 23 12 11 25 25 C 1.53002 * 117.49791 * 180.08845 * 23 12 11 26 26 H 1.09006 * 109.46866 * 270.13816 * 1 2 3 27 27 H 1.09008 * 109.46827 * 30.12850 * 1 2 3 28 28 H 1.08990 * 109.47444 * 150.13321 * 1 2 3 29 29 H 1.07999 * 125.57588 * 179.77302 * 5 3 2 30 30 H 1.08002 * 126.83040 * 180.02562 * 6 5 3 31 31 H 0.97005 * 120.00161 * 359.72135 * 10 8 7 32 32 H 1.09001 * 109.46512 * 299.72412 * 11 10 8 33 33 H 1.08998 * 109.47174 * 59.71534 * 11 10 8 34 34 H 0.96996 * 120.00496 * 335.00043 * 14 12 11 35 35 H 0.96995 * 119.99923 * 180.02562 * 18 17 15 36 36 H 1.09001 * 115.55265 * 34.41319 * 23 12 11 37 37 H 1.09000 * 117.49671 * 0.02562 * 24 23 12 38 38 H 1.08997 * 117.49621 * 145.02119 * 24 23 12 39 39 H 1.09003 * 117.49834 * 214.97943 * 25 23 12 40 40 H 1.09000 * 117.50079 * 359.97438 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2948 1.0921 0.0000 4 1 1.9735 2.0073 0.0004 5 6 3.6096 0.7273 -0.0067 6 6 3.6881 -0.6154 -0.0054 7 6 2.3070 -1.1093 0.0025 8 6 1.8701 -2.5157 0.0063 9 8 0.6837 -2.7839 0.0128 10 7 2.7847 -3.5055 0.0027 11 6 2.3500 -4.9046 0.0058 12 6 3.5762 -5.8196 -0.0064 13 1 4.1359 -5.6894 0.9198 14 7 4.4305 -5.4760 -1.1457 15 6 5.7701 -5.7574 -1.1064 16 1 6.1967 -6.2331 -0.2356 17 6 6.5797 -5.4324 -2.1862 18 7 6.0597 -4.8532 -3.2476 19 14 8.4069 -5.8169 -2.1328 20 1 8.6429 -7.1759 -2.6833 21 1 9.1468 -4.8184 -2.9455 22 1 8.8834 -5.7624 -0.7274 23 6 3.1243 -7.2762 -0.1288 24 6 3.3312 -8.1845 1.0851 25 6 4.2109 -8.3530 -0.1563 26 1 -0.3633 0.0025 1.0277 27 1 -0.3633 0.8889 -0.5159 28 1 -0.3634 -0.8911 -0.5117 29 1 4.4499 1.4057 -0.0117 30 1 4.5889 -1.2112 -0.0092 31 1 3.7308 -3.2916 -0.0065 32 1 1.7600 -5.0996 0.9013 33 1 1.7431 -5.0985 -0.8785 34 1 4.0475 -5.0491 -1.9279 35 1 6.6253 -4.6264 -4.0023 36 1 2.2348 -7.4430 -0.7363 37 1 3.7889 -7.7441 1.9709 38 1 2.5781 -8.9490 1.2757 39 1 4.0361 -9.2284 -0.7818 40 1 5.2477 -8.0237 -0.0877 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661117122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:39 Heat of formation + Delta-G solvation = 16.892189 kcal Electronic energy + Delta-G solvation = -21361.397660 eV Core-core repulsion = 18176.804570 eV Total energy + Delta-G solvation = -3184.593090 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.10606 -40.15114 -38.86256 -36.02387 -35.08377 -32.86237 -32.39593 -31.85997 -29.60037 -27.25264 -25.63974 -24.34077 -23.01984 -22.67372 -21.45121 -21.29523 -20.28620 -19.13077 -18.51841 -17.02485 -16.86173 -16.74845 -16.22065 -15.94744 -15.60533 -15.19322 -14.91187 -14.84985 -14.49343 -14.10926 -13.95764 -13.62396 -13.53231 -13.37145 -12.96059 -12.86792 -12.63994 -12.44847 -12.38588 -12.22257 -11.96284 -11.70088 -11.01558 -10.97365 -10.79147 -10.68784 -10.01928 -9.65701 -9.06795 -8.96640 -7.85221 -5.13017 0.80798 1.50934 1.52053 1.56504 1.59362 2.22542 2.58510 2.63685 2.67930 3.10393 3.51372 3.83198 3.96588 4.02895 4.11560 4.21344 4.33902 4.35474 4.38479 4.42234 4.61642 4.69491 4.72585 4.76504 4.89619 4.91991 5.01924 5.10756 5.17708 5.19867 5.34776 5.42376 5.49895 5.63729 5.66727 5.81851 6.01527 6.33863 6.69330 6.80509 7.41836 7.43160 8.13161 8.39303 9.37761 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014889 B = 0.005285 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.192138 B = 5296.530772 C = 6804.517806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.101 3.899 3 N -0.535 5.535 4 H 0.435 0.565 5 C -0.001 4.001 6 C -0.194 4.194 7 C -0.273 4.273 8 C 0.580 3.420 9 O -0.593 6.593 10 N -0.710 5.710 11 C 0.130 3.870 12 C 0.198 3.802 13 H 0.056 0.944 14 N -0.722 5.722 15 C -0.218 4.218 16 H 0.077 0.923 17 C -0.071 4.071 18 N -0.968 5.968 19 Si 0.961 3.039 20 H -0.294 1.294 21 H -0.301 1.301 22 H -0.269 1.269 23 C -0.174 4.174 24 C -0.161 4.161 25 C -0.173 4.173 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.206 0.794 30 H 0.138 0.862 31 H 0.407 0.593 32 H 0.077 0.923 33 H 0.048 0.952 34 H 0.372 0.628 35 H 0.247 0.753 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.682 10.089 9.644 15.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.019 4.019 3 N -0.133 5.133 4 H 0.275 0.725 5 C -0.128 4.128 6 C -0.217 4.217 7 C -0.283 4.283 8 C 0.371 3.629 9 O -0.477 6.477 10 N -0.360 5.360 11 C 0.006 3.994 12 C 0.089 3.911 13 H 0.073 0.927 14 N -0.362 5.362 15 C -0.350 4.350 16 H 0.095 0.905 17 C -0.263 4.263 18 N -0.619 5.619 19 Si 0.792 3.208 20 H -0.222 1.222 21 H -0.228 1.228 22 H -0.194 1.194 23 C -0.195 4.195 24 C -0.199 4.199 25 C -0.210 4.210 26 H 0.103 0.897 27 H 0.112 0.888 28 H 0.092 0.908 29 H 0.223 0.777 30 H 0.156 0.844 31 H 0.243 0.757 32 H 0.095 0.905 33 H 0.066 0.934 34 H 0.204 0.796 35 H 0.056 0.944 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.126 0.874 39 H 0.105 0.895 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.321 9.984 9.737 16.240 hybrid contribution 1.443 0.021 -0.900 1.701 sum -6.878 10.005 8.837 15.017 Atomic orbital electron populations 1.20529 0.85899 1.04282 1.03876 1.20520 0.94504 0.85796 1.01039 1.41525 1.05684 1.08679 1.57403 0.72497 1.22185 0.86653 0.95834 1.08162 1.22240 0.95325 0.95294 1.08878 1.20279 0.94850 0.91773 1.21372 1.17773 0.84925 0.85267 0.74977 1.90643 1.17640 1.85267 1.54174 1.45757 1.10369 1.05736 1.74098 1.21433 0.96496 0.80229 1.01261 1.20136 0.89604 0.90233 0.91163 0.92651 1.42544 1.04834 1.71634 1.17153 1.19463 0.84996 1.30408 1.00084 0.90530 1.25375 1.01403 1.02781 0.96718 1.69824 1.35545 1.49361 1.07136 0.85317 0.81540 0.76547 0.77430 1.22210 1.22803 1.19378 1.22917 1.00393 0.93644 1.02589 1.23034 1.02761 1.02300 0.91779 1.22736 0.96764 0.99980 1.01526 0.89715 0.88784 0.90802 0.77685 0.84446 0.75712 0.90482 0.93385 0.79649 0.94432 0.88867 0.88633 0.87447 0.89536 0.90077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.89 9.88 71.23 0.70 -1.19 16 2 C 0.10 2.59 7.17 41.78 0.30 2.89 16 3 N -0.54 -9.66 5.90 -182.72 -1.08 -10.74 16 4 H 0.43 4.03 8.96 -92.71 -0.83 3.20 16 5 C 0.00 -0.01 11.89 83.12 0.99 0.97 16 6 C -0.19 -5.63 10.56 23.62 0.25 -5.38 16 7 C -0.27 -8.97 6.29 -19.04 -0.12 -9.09 16 8 C 0.58 22.26 7.81 86.62 0.68 22.94 16 9 O -0.59 -24.84 14.82 -4.13 -0.06 -24.90 16 10 N -0.71 -26.78 5.38 -466.51 -2.51 -29.29 16 11 C 0.13 4.78 5.22 86.38 0.45 5.23 16 12 C 0.20 7.57 2.70 44.99 0.12 7.70 16 13 H 0.06 2.12 7.84 -2.39 -0.02 2.10 16 14 N -0.72 -34.35 4.54 -322.96 -1.47 -35.81 16 15 C -0.22 -11.28 8.63 84.03 0.73 -10.55 16 16 H 0.08 3.82 6.91 -2.91 -0.02 3.80 16 17 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 18 N -0.97 -57.94 13.06 21.65 0.28 -57.66 16 19 Si 0.96 45.06 29.55 68.60 2.03 47.09 16 20 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 21 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 23 C -0.17 -6.06 5.36 -10.79 -0.06 -6.12 16 24 C -0.16 -4.58 10.18 30.62 0.31 -4.27 16 25 C -0.17 -6.05 9.78 30.62 0.30 -5.75 16 26 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 27 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.07 2.05 6.47 -2.39 -0.02 2.04 16 29 H 0.21 2.55 8.06 -2.91 -0.02 2.52 16 30 H 0.14 4.17 7.70 -2.91 -0.02 4.15 16 31 H 0.41 15.73 7.26 -92.70 -0.67 15.06 16 32 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.37 19.80 7.80 -92.71 -0.72 19.07 16 35 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 36 H 0.09 3.20 8.11 -2.39 -0.02 3.18 16 37 H 0.10 2.57 8.05 -2.39 -0.02 2.55 16 38 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 39 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 40 H 0.08 3.22 6.23 -2.39 -0.01 3.21 16 Total: -1.00 -69.09 336.08 1.16 -67.93 By element: Atomic # 1 Polarization: 50.58 SS G_CDS: -1.15 Total: 49.43 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: 5.11 Total: -6.06 kcal Atomic # 7 Polarization: -128.72 SS G_CDS: -4.77 Total: -133.49 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.06 Total: -24.90 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -69.09 1.16 -67.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661117122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.825 kcal (2) G-P(sol) polarization free energy of solvation -69.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds