Wall clock time and date at job start Mon Mar 30 2020 02:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.34489 * 126.83608 * 2 1 4 4 N 1.36449 * 108.85846 * 180.25632 * 3 2 1 5 5 H 0.97002 * 124.85312 * 179.72951 * 4 3 2 6 6 C 1.34656 * 110.29668 * 359.74382 * 4 3 2 7 7 C 1.36771 * 108.39773 * 0.02562 * 6 4 3 8 8 C 1.47261 * 126.94294 * 179.97438 * 7 6 4 9 9 O 1.21627 * 120.00322 * 180.02562 * 8 7 6 10 10 N 1.34775 * 119.99877 * 0.02599 * 8 7 6 11 11 C 1.46510 * 119.99913 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.46971 * 179.97438 * 11 10 8 13 13 H 1.09005 * 109.47475 * 294.99786 * 12 11 10 14 14 N 1.46495 * 109.47430 * 55.00029 * 12 11 10 15 15 C 1.36938 * 120.00339 * 205.00119 * 14 12 11 16 16 H 1.08002 * 119.99958 * 359.97438 * 15 14 12 17 17 C 1.38808 * 119.99924 * 180.02562 * 15 14 12 18 18 N 1.31621 * 119.99770 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00244 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47091 * 90.00275 * 19 17 15 21 21 H 1.48503 * 109.47129 * 210.00332 * 19 17 15 22 22 H 1.48493 * 109.47357 * 330.00257 * 19 17 15 23 23 C 1.53003 * 109.46999 * 175.00231 * 12 11 10 24 24 C 1.53001 * 117.51964 * 111.28362 * 23 12 11 25 25 C 1.52999 * 60.00190 * 107.47982 * 24 23 12 26 26 H 1.09008 * 109.47206 * 270.14955 * 1 2 3 27 27 H 1.09005 * 109.47143 * 30.14599 * 1 2 3 28 28 H 1.08995 * 109.47692 * 150.14793 * 1 2 3 29 29 H 1.08001 * 125.57390 * 0.03417 * 3 2 1 30 30 H 1.08002 * 125.80557 * 180.02562 * 6 4 3 31 31 H 0.96992 * 120.00193 * 359.97438 * 10 8 7 32 32 H 1.08998 * 109.46981 * 59.99955 * 11 10 8 33 33 H 1.08998 * 109.46837 * 299.99947 * 11 10 8 34 34 H 0.97002 * 119.99615 * 24.99601 * 14 12 11 35 35 H 0.97007 * 120.00095 * 179.97438 * 18 17 15 36 36 H 1.09002 * 115.54973 * 325.58146 * 23 12 11 37 37 H 1.09001 * 117.49733 * 214.97413 * 24 23 12 38 38 H 1.08995 * 117.49577 * 359.97438 * 24 23 12 39 39 H 1.09004 * 117.50150 * 252.51496 * 25 24 23 40 40 H 1.09004 * 117.49681 * 107.48417 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6553 -0.0058 5 1 4.3840 1.2413 -0.0107 6 6 3.6656 -0.6902 -0.0039 7 6 2.3863 -1.1740 0.0026 8 6 1.9748 -2.5880 0.0061 9 8 0.7936 -2.8776 0.0115 10 7 2.9073 -3.5611 0.0034 11 6 2.4979 -4.9679 0.0075 12 6 3.7404 -5.8606 0.0026 13 1 4.2843 -5.7213 -0.9318 14 7 4.6049 -5.5005 1.1291 15 6 5.9486 -5.7578 1.0706 16 1 6.3711 -6.2265 0.1941 17 6 6.7676 -5.4171 2.1383 18 7 8.0591 -5.6648 2.0823 19 14 6.0369 -4.6071 3.6547 20 1 5.6262 -5.6531 4.6253 21 1 7.0518 -3.7219 4.2807 22 1 4.8519 -3.8022 3.2635 23 6 3.3168 -7.3250 0.1325 24 6 3.5229 -8.2311 -1.0831 25 6 4.4229 -8.3820 0.1450 26 1 -0.3634 0.0027 1.0277 27 1 -0.3634 0.8887 -0.5161 28 1 -0.3634 -0.8912 -0.5115 29 1 1.9868 2.1059 0.0005 30 1 4.5663 -1.2861 -0.0071 31 1 3.8493 -3.3302 -0.0013 32 1 1.8990 -5.1745 -0.8795 33 1 1.9071 -5.1717 0.9005 34 1 4.2254 -5.0798 1.9165 35 1 8.6315 -5.4264 2.8283 36 1 2.4394 -7.5073 0.7530 37 1 2.7811 -9.0094 -1.2622 38 1 3.9601 -7.7838 -1.9757 39 1 5.4525 -8.0341 0.0603 40 1 4.2732 -9.2597 0.7739 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661192548.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:15 Heat of formation + Delta-G solvation = 41.602616 kcal Electronic energy + Delta-G solvation = -21424.066502 eV Core-core repulsion = 18240.544936 eV Total energy + Delta-G solvation = -3183.521566 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.12182 -38.87207 -37.49078 -34.65123 -33.40791 -32.37427 -31.34237 -30.00511 -28.04472 -26.50471 -23.98371 -22.70709 -21.77093 -21.59387 -19.99239 -19.66811 -19.04204 -18.32513 -17.51982 -16.01185 -15.36691 -15.33788 -14.89901 -14.48739 -14.07737 -13.96929 -13.64338 -13.59857 -13.29699 -12.79387 -12.72329 -12.61502 -12.35501 -12.28695 -11.48290 -11.36857 -11.30822 -10.94664 -10.87954 -10.69807 -10.25935 -9.72378 -9.65900 -9.46263 -9.34205 -9.01185 -8.75130 -8.43911 -8.26290 -7.36351 -5.84015 -3.19650 1.88858 2.42344 3.20182 3.32312 3.37710 3.42090 3.68861 3.85119 4.43231 4.52911 4.89950 5.06390 5.14708 5.17179 5.36933 5.39990 5.44470 5.56848 5.64840 5.71635 5.80640 5.86407 5.90320 5.97076 6.03511 6.13673 6.16639 6.26773 6.32633 6.54739 6.58001 6.76525 6.82369 6.91652 6.93267 7.01567 7.41827 7.91441 8.03555 8.34201 8.71179 9.12582 9.85316 10.05458 11.33678 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014876 B = 0.005678 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.800740 B = 4930.163692 C = 6260.071538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.112 4.112 3 C -0.032 4.032 4 N -0.551 5.551 5 H 0.417 0.583 6 C 0.051 3.949 7 C -0.226 4.226 8 C 0.585 3.415 9 O -0.556 6.556 10 N -0.718 5.718 11 C 0.119 3.881 12 C 0.198 3.802 13 H 0.063 0.937 14 N -0.742 5.742 15 C -0.239 4.239 16 H 0.092 0.908 17 C 0.008 3.992 18 N -0.932 5.932 19 Si 0.879 3.121 20 H -0.285 1.285 21 H -0.293 1.293 22 H -0.276 1.276 23 C -0.163 4.163 24 C -0.193 4.193 25 C -0.155 4.155 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.166 0.834 30 H 0.176 0.824 31 H 0.406 0.594 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.363 0.637 35 H 0.259 0.741 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.110 0.890 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.812 10.137 -5.733 15.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.118 4.118 3 C -0.159 4.159 4 N -0.145 5.145 5 H 0.253 0.747 6 C -0.085 4.085 7 C -0.237 4.237 8 C 0.373 3.627 9 O -0.435 6.435 10 N -0.369 5.369 11 C -0.006 4.006 12 C 0.088 3.912 13 H 0.081 0.919 14 N -0.385 5.385 15 C -0.369 4.369 16 H 0.110 0.890 17 C -0.188 4.188 18 N -0.579 5.579 19 Si 0.709 3.291 20 H -0.212 1.212 21 H -0.220 1.220 22 H -0.202 1.202 23 C -0.185 4.185 24 C -0.231 4.231 25 C -0.192 4.192 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.097 0.903 29 H 0.184 0.816 30 H 0.193 0.807 31 H 0.241 0.759 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.196 0.804 35 H 0.069 0.931 36 H 0.109 0.891 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.128 0.872 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.311 9.966 -5.795 15.467 hybrid contribution 0.571 0.794 1.366 1.680 sum -9.740 10.760 -4.429 15.174 Atomic orbital electron populations 1.20164 0.89492 1.02358 1.01798 1.20540 0.95540 0.90438 1.05329 1.21528 0.82567 0.99050 1.12791 1.41488 1.08229 1.06752 1.58017 0.74691 1.22106 0.98972 0.83787 1.03644 1.20435 0.92600 0.93020 1.17612 1.17398 0.85390 0.84060 0.75808 1.90699 1.17328 1.83915 1.51584 1.45846 1.10139 1.06015 1.74927 1.21592 0.97298 0.79935 1.01749 1.20029 0.89346 0.89206 0.92573 0.91900 1.42833 1.05404 1.73189 1.17056 1.19018 0.81495 1.33688 1.02709 0.89018 1.24627 0.95225 1.01186 0.97745 1.69696 1.03101 1.52963 1.32186 0.86644 0.78136 0.79623 0.84671 1.21165 1.21977 1.20175 1.22951 1.00483 0.94435 1.00627 1.22938 1.03981 1.03152 0.93015 1.22838 0.97856 0.99489 0.99018 0.92023 0.92651 0.90316 0.81641 0.80729 0.75864 0.91327 0.91964 0.80436 0.93079 0.89111 0.90052 0.89423 0.87152 0.90233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 9.97 36.00 0.36 -0.65 16 2 C -0.11 -1.53 6.35 -102.54 -0.65 -2.18 16 3 C -0.03 -0.34 11.82 -16.82 -0.20 -0.54 16 4 N -0.55 -5.35 5.90 -12.84 -0.08 -5.43 16 5 H 0.42 2.58 8.96 -40.82 -0.37 2.21 16 6 C 0.05 0.64 11.40 -16.84 -0.19 0.45 16 7 C -0.23 -3.45 6.29 -103.35 -0.65 -4.10 16 8 C 0.59 10.28 7.81 -12.59 -0.10 10.18 16 9 O -0.56 -11.15 15.32 5.25 0.08 -11.07 16 10 N -0.72 -11.92 5.38 -61.43 -0.33 -12.25 16 11 C 0.12 1.98 5.22 -4.04 -0.02 1.96 16 12 C 0.20 3.55 2.70 -67.93 -0.18 3.36 16 13 H 0.06 1.15 7.84 -51.93 -0.41 0.75 16 14 N -0.74 -15.90 4.34 -53.43 -0.23 -16.13 16 15 C -0.24 -6.09 9.11 -15.06 -0.14 -6.23 16 16 H 0.09 2.51 7.14 -52.49 -0.37 2.14 16 17 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 18 N -0.93 -27.69 13.97 55.49 0.78 -26.91 16 19 Si 0.88 21.23 27.74 -169.99 -4.71 16.51 16 20 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.28 -6.30 6.52 56.52 0.37 -5.94 16 23 C -0.16 -2.77 5.36 -90.61 -0.49 -3.25 16 24 C -0.19 -2.91 10.18 -26.73 -0.27 -3.18 16 25 C -0.15 -2.75 9.78 -26.73 -0.26 -3.01 16 26 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 1.15 6.86 -51.93 -0.36 0.79 16 29 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.18 1.91 7.45 -52.49 -0.39 1.52 16 31 H 0.41 6.54 7.08 -40.82 -0.29 6.25 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.36 7.98 5.66 -40.82 -0.23 7.75 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.09 1.48 8.11 -51.93 -0.42 1.06 16 37 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.09 1.28 8.05 -51.93 -0.42 0.87 16 39 H 0.11 2.28 6.23 -51.93 -0.32 1.95 16 40 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 333.47 15.07 5.03 5.03 Total: -1.00 -32.19 333.47 -8.07 -40.26 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: -5.71 Total: 17.06 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: -2.89 Total: -7.06 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: 0.14 Total: -60.73 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.08 Total: -11.07 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.71 Total: 16.51 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.19 -8.07 -40.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661192548.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.862 kcal (2) G-P(sol) polarization free energy of solvation -32.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds