Wall clock time and date at job start Mon Mar 30 2020 02:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.34489 * 126.83608 * 2 1 4 4 N 1.36449 * 108.85846 * 180.25632 * 3 2 1 5 5 H 0.97002 * 124.85312 * 179.72951 * 4 3 2 6 6 C 1.34656 * 110.29668 * 359.74382 * 4 3 2 7 7 C 1.36771 * 108.39773 * 0.02562 * 6 4 3 8 8 C 1.47261 * 126.94294 * 179.97438 * 7 6 4 9 9 O 1.21627 * 120.00322 * 180.02562 * 8 7 6 10 10 N 1.34775 * 119.99877 * 0.02599 * 8 7 6 11 11 C 1.46510 * 119.99913 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.46971 * 179.97438 * 11 10 8 13 13 H 1.09005 * 109.47475 * 294.99786 * 12 11 10 14 14 N 1.46495 * 109.47430 * 55.00029 * 12 11 10 15 15 C 1.36938 * 120.00339 * 205.00119 * 14 12 11 16 16 H 1.08002 * 119.99958 * 359.97438 * 15 14 12 17 17 C 1.38808 * 119.99924 * 180.02562 * 15 14 12 18 18 N 1.31621 * 119.99770 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00244 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47091 * 90.00275 * 19 17 15 21 21 H 1.48503 * 109.47129 * 210.00332 * 19 17 15 22 22 H 1.48493 * 109.47357 * 330.00257 * 19 17 15 23 23 C 1.53003 * 109.46999 * 175.00231 * 12 11 10 24 24 C 1.53001 * 117.51964 * 111.28362 * 23 12 11 25 25 C 1.52999 * 60.00190 * 107.47982 * 24 23 12 26 26 H 1.09008 * 109.47206 * 270.14955 * 1 2 3 27 27 H 1.09005 * 109.47143 * 30.14599 * 1 2 3 28 28 H 1.08995 * 109.47692 * 150.14793 * 1 2 3 29 29 H 1.08001 * 125.57390 * 0.03417 * 3 2 1 30 30 H 1.08002 * 125.80557 * 180.02562 * 6 4 3 31 31 H 0.96992 * 120.00193 * 359.97438 * 10 8 7 32 32 H 1.08998 * 109.46981 * 59.99955 * 11 10 8 33 33 H 1.08998 * 109.46837 * 299.99947 * 11 10 8 34 34 H 0.97002 * 119.99615 * 24.99601 * 14 12 11 35 35 H 0.97007 * 120.00095 * 179.97438 * 18 17 15 36 36 H 1.09002 * 115.54973 * 325.58146 * 23 12 11 37 37 H 1.09001 * 117.49733 * 214.97413 * 24 23 12 38 38 H 1.08995 * 117.49577 * 359.97438 * 24 23 12 39 39 H 1.09004 * 117.50150 * 252.51496 * 25 24 23 40 40 H 1.09004 * 117.49681 * 107.48417 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6553 -0.0058 5 1 4.3840 1.2413 -0.0107 6 6 3.6656 -0.6902 -0.0039 7 6 2.3863 -1.1740 0.0026 8 6 1.9748 -2.5880 0.0061 9 8 0.7936 -2.8776 0.0115 10 7 2.9073 -3.5611 0.0034 11 6 2.4979 -4.9679 0.0075 12 6 3.7404 -5.8606 0.0026 13 1 4.2843 -5.7213 -0.9318 14 7 4.6049 -5.5005 1.1291 15 6 5.9486 -5.7578 1.0706 16 1 6.3711 -6.2265 0.1941 17 6 6.7676 -5.4171 2.1383 18 7 8.0591 -5.6648 2.0823 19 14 6.0369 -4.6071 3.6547 20 1 5.6262 -5.6531 4.6253 21 1 7.0518 -3.7219 4.2807 22 1 4.8519 -3.8022 3.2635 23 6 3.3168 -7.3250 0.1325 24 6 3.5229 -8.2311 -1.0831 25 6 4.4229 -8.3820 0.1450 26 1 -0.3634 0.0027 1.0277 27 1 -0.3634 0.8887 -0.5161 28 1 -0.3634 -0.8912 -0.5115 29 1 1.9868 2.1059 0.0005 30 1 4.5663 -1.2861 -0.0071 31 1 3.8493 -3.3302 -0.0013 32 1 1.8990 -5.1745 -0.8795 33 1 1.9071 -5.1717 0.9005 34 1 4.2254 -5.0798 1.9165 35 1 8.6315 -5.4264 2.8283 36 1 2.4394 -7.5073 0.7530 37 1 2.7811 -9.0094 -1.2622 38 1 3.9601 -7.7838 -1.9757 39 1 5.4525 -8.0341 0.0603 40 1 4.2732 -9.2597 0.7739 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661192548.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:15 Heat of formation + Delta-G solvation = 19.572633 kcal Electronic energy + Delta-G solvation = -21425.021793 eV Core-core repulsion = 18240.544936 eV Total energy + Delta-G solvation = -3184.476857 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.06054 -40.21461 -38.94275 -36.10966 -35.14769 -33.30934 -33.13518 -31.27145 -29.48484 -27.40793 -25.55063 -24.32141 -23.08137 -22.91979 -21.44746 -20.71709 -20.31850 -19.46714 -19.09931 -17.24568 -16.96838 -16.73012 -16.19486 -16.03776 -15.52336 -15.24243 -14.93070 -14.71282 -14.65173 -14.33891 -14.04781 -13.86966 -13.55361 -13.25617 -13.13278 -12.97371 -12.69563 -12.40780 -12.28998 -12.25842 -12.04820 -11.63184 -11.06736 -11.04108 -10.85497 -10.72610 -10.05800 -9.50630 -9.30275 -9.16294 -7.95621 -5.27660 0.79969 1.38972 1.42995 1.47673 1.52208 2.30132 2.51165 2.51928 2.61717 3.02309 3.39207 3.67498 3.85357 4.01519 4.08897 4.17716 4.31318 4.35165 4.37042 4.45585 4.57113 4.66017 4.73642 4.85630 4.91892 4.92448 4.95583 5.14033 5.17977 5.18681 5.35773 5.41326 5.50413 5.59861 5.86002 5.86536 5.98082 6.26619 6.67231 6.74856 7.12455 7.39765 7.87136 8.06898 9.25403 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014876 B = 0.005678 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.800740 B = 4930.163692 C = 6260.071538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.150 4.150 3 C -0.008 4.008 4 N -0.533 5.533 5 H 0.436 0.564 6 C 0.058 3.942 7 C -0.268 4.268 8 C 0.580 3.420 9 O -0.590 6.590 10 N -0.716 5.716 11 C 0.128 3.872 12 C 0.202 3.798 13 H 0.060 0.940 14 N -0.741 5.741 15 C -0.204 4.204 16 H 0.067 0.933 17 C -0.055 4.055 18 N -0.982 5.982 19 Si 0.940 3.060 20 H -0.293 1.293 21 H -0.301 1.301 22 H -0.254 1.254 23 C -0.171 4.171 24 C -0.162 4.162 25 C -0.175 4.175 26 H 0.057 0.943 27 H 0.083 0.917 28 H 0.049 0.951 29 H 0.206 0.794 30 H 0.186 0.814 31 H 0.408 0.592 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.363 0.637 35 H 0.254 0.746 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.094 11.837 -6.114 17.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.156 4.156 3 C -0.136 4.136 4 N -0.129 5.129 5 H 0.277 0.723 6 C -0.081 4.081 7 C -0.278 4.278 8 C 0.371 3.629 9 O -0.472 6.472 10 N -0.367 5.367 11 C 0.003 3.997 12 C 0.093 3.907 13 H 0.078 0.922 14 N -0.384 5.384 15 C -0.335 4.335 16 H 0.084 0.916 17 C -0.246 4.246 18 N -0.633 5.633 19 Si 0.769 3.231 20 H -0.220 1.220 21 H -0.228 1.228 22 H -0.179 1.179 23 C -0.192 4.192 24 C -0.199 4.199 25 C -0.213 4.213 26 H 0.076 0.924 27 H 0.101 0.899 28 H 0.068 0.932 29 H 0.223 0.777 30 H 0.203 0.797 31 H 0.244 0.756 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.196 0.804 35 H 0.063 0.937 36 H 0.121 0.879 37 H 0.127 0.873 38 H 0.111 0.889 39 H 0.093 0.907 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.619 11.689 -6.206 17.611 hybrid contribution 0.954 0.258 1.365 1.686 sum -10.665 11.947 -4.841 16.730 Atomic orbital electron populations 1.20093 0.89423 1.02258 1.01518 1.20827 0.96189 0.90958 1.07601 1.22053 0.82062 0.99971 1.09525 1.41542 1.09041 1.06099 1.56178 0.72331 1.22210 0.98320 0.85021 1.02512 1.20486 0.94456 0.92232 1.20638 1.17824 0.84933 0.85185 0.74979 1.90669 1.18606 1.84582 1.53357 1.45833 1.10168 1.05907 1.74823 1.21476 0.96367 0.79830 1.01992 1.20116 0.89240 0.90338 0.90970 0.92250 1.42798 1.04308 1.73180 1.18083 1.18922 0.83004 1.30518 1.01044 0.91562 1.25221 0.95478 1.03188 1.00714 1.69850 1.04651 1.55730 1.33054 0.85644 0.77777 0.78536 0.81107 1.21995 1.22777 1.17928 1.22899 1.00425 0.93313 1.02562 1.23013 1.02660 1.02368 0.91883 1.22716 0.96336 1.00304 1.01900 0.92424 0.89854 0.93228 0.77702 0.79654 0.75620 0.90233 0.92532 0.80437 0.93684 0.87901 0.87262 0.88910 0.90716 0.89409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.83 9.97 71.23 0.71 -1.12 16 2 C -0.15 -3.83 6.35 -18.52 -0.12 -3.95 16 3 C -0.01 -0.14 11.82 83.12 0.98 0.84 16 4 N -0.53 -8.55 5.90 -194.55 -1.15 -9.69 16 5 H 0.44 3.65 8.96 -92.71 -0.83 2.82 16 6 C 0.06 1.31 11.40 83.92 0.96 2.27 16 7 C -0.27 -7.91 6.29 -19.04 -0.12 -8.03 16 8 C 0.58 20.29 7.81 86.62 0.68 20.96 16 9 O -0.59 -23.95 15.32 -4.12 -0.06 -24.02 16 10 N -0.72 -23.29 5.38 -466.52 -2.51 -25.80 16 11 C 0.13 4.12 5.22 86.38 0.45 4.57 16 12 C 0.20 7.02 2.70 44.99 0.12 7.14 16 13 H 0.06 2.13 7.84 -2.38 -0.02 2.11 16 14 N -0.74 -31.27 4.34 -322.95 -1.40 -32.67 16 15 C -0.20 -10.47 9.11 84.03 0.77 -9.70 16 16 H 0.07 3.73 7.14 -2.91 -0.02 3.71 16 17 C -0.05 -3.01 5.50 84.86 0.47 -2.55 16 18 N -0.98 -59.81 13.97 21.65 0.30 -59.51 16 19 Si 0.94 44.07 27.74 68.60 1.90 45.98 16 20 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 21 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 22 H -0.25 -10.87 6.52 99.48 0.65 -10.23 16 23 C -0.17 -5.51 5.36 -10.79 -0.06 -5.57 16 24 C -0.16 -4.49 10.18 30.59 0.31 -4.18 16 25 C -0.18 -6.11 9.78 30.60 0.30 -5.81 16 26 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 27 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 28 H 0.05 1.47 6.86 -2.39 -0.02 1.45 16 29 H 0.21 1.86 8.06 -2.91 -0.02 1.84 16 30 H 0.19 3.69 7.45 -2.91 -0.02 3.67 16 31 H 0.41 12.79 7.08 -92.71 -0.66 12.13 16 32 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.36 15.48 5.66 -92.71 -0.52 14.95 16 35 H 0.25 15.00 8.31 -92.70 -0.77 14.23 16 36 H 0.10 3.11 8.11 -2.39 -0.02 3.10 16 37 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.09 2.51 8.05 -2.39 -0.02 2.49 16 39 H 0.07 3.16 6.23 -2.39 -0.01 3.15 16 40 H 0.09 2.88 8.14 -2.38 -0.02 2.86 16 Total: -1.00 -71.54 333.47 1.54 -70.00 By element: Atomic # 1 Polarization: 41.82 SS G_CDS: -0.99 Total: 40.83 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: 5.45 Total: -5.12 kcal Atomic # 7 Polarization: -122.92 SS G_CDS: -4.76 Total: -127.67 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.06 Total: -24.02 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.90 Total: 45.98 kcal Total: -71.54 1.54 -70.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661192548.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.577 kcal (2) G-P(sol) polarization free energy of solvation -71.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds