Wall clock time and date at job start Mon Mar 30 2020 02:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34492 * 126.83046 * 2 1 4 4 N 1.36445 * 108.85429 * 180.02562 * 3 2 1 5 5 H 0.96996 * 124.84970 * 180.02562 * 4 3 2 6 6 C 1.34652 * 110.30117 * 0.02562 * 4 3 2 7 7 C 1.36775 * 108.39813 * 359.97438 * 6 4 3 8 8 C 1.47253 * 126.94353 * 179.74341 * 7 6 4 9 9 O 1.21634 * 120.00038 * 180.02562 * 8 7 6 10 10 N 1.34774 * 120.00320 * 0.02562 * 8 7 6 11 11 C 1.46503 * 120.00682 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.47522 * 179.97438 * 11 10 8 13 13 H 1.09001 * 109.46979 * 65.00248 * 12 11 10 14 14 N 1.46501 * 109.47253 * 304.99786 * 12 11 10 15 15 C 1.36937 * 119.99817 * 154.99539 * 14 12 11 16 16 H 1.07998 * 120.00151 * 0.02562 * 15 14 12 17 17 C 1.38807 * 119.99894 * 180.02562 * 15 14 12 18 18 N 1.31627 * 120.00055 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00097 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47092 * 90.00545 * 19 17 15 21 21 H 1.48501 * 109.47434 * 210.00141 * 19 17 15 22 22 H 1.48495 * 109.47627 * 330.00642 * 19 17 15 23 23 C 1.52994 * 109.47102 * 185.00065 * 12 11 10 24 24 C 1.52999 * 117.50060 * 248.74967 * 23 12 11 25 25 C 1.52998 * 117.49971 * 180.08989 * 23 12 11 26 26 H 1.08996 * 109.47378 * 269.97312 * 1 2 3 27 27 H 1.08997 * 109.47539 * 29.97852 * 1 2 3 28 28 H 1.09002 * 109.47261 * 149.97663 * 1 2 3 29 29 H 1.07995 * 125.56876 * 0.06208 * 3 2 1 30 30 H 1.08003 * 125.80592 * 180.02562 * 6 4 3 31 31 H 0.97002 * 119.99925 * 359.97438 * 10 8 7 32 32 H 1.09000 * 109.46727 * 300.00248 * 11 10 8 33 33 H 1.09002 * 109.46678 * 59.99418 * 11 10 8 34 34 H 0.96999 * 120.00137 * 335.00300 * 14 12 11 35 35 H 0.97001 * 119.99816 * 180.02562 * 18 17 15 36 36 H 1.09000 * 115.55349 * 34.41526 * 23 12 11 37 37 H 1.09000 * 117.49668 * 359.97438 * 24 23 12 38 38 H 1.08994 * 117.50203 * 145.02228 * 24 23 12 39 39 H 1.09002 * 117.50038 * 214.97985 * 25 23 12 40 40 H 1.08999 * 117.50036 * 359.97057 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0765 0.0000 4 7 3.6110 0.6554 -0.0006 5 1 4.3839 1.2415 -0.0003 6 6 3.6657 -0.6900 -0.0015 7 6 2.3864 -1.1740 -0.0010 8 6 1.9751 -2.5879 -0.0069 9 8 0.7937 -2.8776 -0.0062 10 7 2.9075 -3.5610 -0.0133 11 6 2.4983 -4.9677 -0.0197 12 6 3.7409 -5.8603 -0.0268 13 1 4.2911 -5.7244 0.9043 14 7 4.5975 -5.4960 -1.1580 15 6 5.9416 -5.7533 -1.1097 16 1 6.3701 -6.2252 -0.2378 17 6 6.7534 -5.4077 -2.1813 18 7 6.2313 -4.8321 -3.2437 19 14 8.5868 -5.7593 -2.1157 20 1 8.8518 -7.1106 -2.6716 21 1 9.3148 -4.7430 -2.9172 22 1 9.0515 -5.7040 -0.7064 23 6 3.3165 -7.3242 -0.1593 24 6 3.5305 -8.2343 1.0519 25 6 4.4225 -8.3811 -0.1834 26 1 -0.3634 -0.0005 1.0276 27 1 -0.3634 0.8901 -0.5135 28 1 -0.3634 -0.8898 -0.5142 29 1 1.9866 2.1059 0.0010 30 1 4.5665 -1.2858 -0.0017 31 1 3.8496 -3.3300 -0.0143 32 1 1.9048 -5.1775 0.8701 33 1 1.9020 -5.1685 -0.9098 34 1 4.2127 -5.0724 -1.9412 35 1 6.7985 -4.5909 -3.9927 36 1 2.4348 -7.5043 -0.7744 37 1 3.9742 -7.7901 1.9430 38 1 2.7901 -9.0132 1.2333 39 1 4.2685 -9.2566 -0.8141 40 1 5.4526 -8.0334 -0.1053 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661192549.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:18 Heat of formation + Delta-G solvation = 37.893446 kcal Electronic energy + Delta-G solvation = -21331.560056 eV Core-core repulsion = 18147.877649 eV Total energy + Delta-G solvation = -3183.682407 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.01618 -38.72810 -37.37789 -34.52329 -33.32835 -32.27806 -31.10781 -29.72653 -27.67752 -26.41364 -23.97148 -22.92452 -21.73569 -21.55084 -19.84497 -19.56336 -18.84003 -18.20452 -17.21993 -15.89035 -15.27602 -15.13756 -14.81509 -14.40801 -14.11110 -13.81450 -13.54229 -13.37608 -13.20225 -13.04565 -12.60264 -12.51354 -12.20061 -11.95911 -11.35229 -11.25282 -11.11313 -10.87674 -10.85728 -10.68004 -10.13752 -9.92590 -9.60788 -9.36509 -9.24560 -8.98310 -8.62202 -8.30863 -8.15706 -7.04477 -5.82304 -3.11611 2.00888 2.51966 3.29966 3.37283 3.43128 3.44874 3.82405 3.98766 4.42964 4.59327 5.00426 5.15906 5.26453 5.28778 5.46760 5.52724 5.54898 5.62347 5.74918 5.82437 5.95380 5.95917 5.98977 6.07129 6.11998 6.21305 6.24531 6.41100 6.48772 6.57494 6.65805 6.81112 6.92644 6.99676 7.01889 7.09155 7.51663 7.64038 8.18770 8.34641 8.85269 9.46729 10.02311 10.38751 11.39379 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014910 B = 0.005250 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.520638 B = 5331.892563 C = 6839.500847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.112 4.112 3 C -0.034 4.034 4 N -0.552 5.552 5 H 0.416 0.584 6 C 0.054 3.946 7 C -0.224 4.224 8 C 0.585 3.415 9 O -0.558 6.558 10 N -0.713 5.713 11 C 0.122 3.878 12 C 0.193 3.807 13 H 0.054 0.946 14 N -0.716 5.716 15 C -0.235 4.235 16 H 0.070 0.930 17 C -0.010 4.010 18 N -0.929 5.929 19 Si 0.901 3.099 20 H -0.290 1.290 21 H -0.293 1.293 22 H -0.283 1.283 23 C -0.158 4.158 24 C -0.196 4.196 25 C -0.157 4.157 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.165 0.835 30 H 0.176 0.824 31 H 0.406 0.594 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.386 0.614 35 H 0.255 0.745 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.515 8.312 8.075 12.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.119 4.119 3 C -0.161 4.161 4 N -0.146 5.146 5 H 0.252 0.748 6 C -0.083 4.083 7 C -0.235 4.235 8 C 0.373 3.627 9 O -0.439 6.439 10 N -0.364 5.364 11 C -0.003 4.003 12 C 0.082 3.918 13 H 0.072 0.928 14 N -0.357 5.357 15 C -0.367 4.367 16 H 0.088 0.912 17 C -0.206 4.206 18 N -0.577 5.577 19 Si 0.733 3.267 20 H -0.217 1.217 21 H -0.219 1.219 22 H -0.208 1.208 23 C -0.180 4.180 24 C -0.234 4.234 25 C -0.194 4.194 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.097 0.903 29 H 0.183 0.817 30 H 0.193 0.807 31 H 0.242 0.758 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.220 0.780 35 H 0.065 0.935 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.073 8.175 8.102 13.014 hybrid contribution 1.896 0.136 -0.480 1.961 sum -4.176 8.311 7.622 12.026 Atomic orbital electron populations 1.20160 0.89566 1.02411 1.01658 1.20535 0.95504 0.90492 1.05357 1.21505 0.82615 0.98992 1.12985 1.41471 1.08153 1.06774 1.58167 0.74800 1.22099 0.99001 0.83686 1.03487 1.20432 0.92553 0.93037 1.17431 1.17382 0.85385 0.84060 0.75825 1.90693 1.17393 1.83935 1.51834 1.45799 1.10129 1.05909 1.74599 1.21533 0.97250 0.80048 1.01450 1.20063 0.89790 0.89062 0.92885 0.92778 1.42461 1.04449 1.71752 1.17076 1.19167 0.83650 1.32977 1.00862 0.91172 1.24711 0.97755 1.01590 0.96577 1.69672 1.34442 1.46814 1.06731 0.86284 0.85757 0.77543 0.77138 1.21747 1.21930 1.20834 1.23032 1.00173 0.94726 1.00069 1.22957 1.04058 1.03409 0.92981 1.22776 0.97646 0.99870 0.99097 0.92112 0.92710 0.90276 0.81742 0.80731 0.75802 0.91787 0.91939 0.77992 0.93531 0.89116 0.89566 0.90103 0.90264 0.87771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.06 9.98 36.00 0.36 -0.70 16 2 C -0.11 -1.61 6.35 -102.54 -0.65 -2.26 16 3 C -0.03 -0.38 11.82 -16.82 -0.20 -0.57 16 4 N -0.55 -5.71 5.90 -12.85 -0.08 -5.78 16 5 H 0.42 2.81 8.96 -40.82 -0.37 2.45 16 6 C 0.05 0.71 11.40 -16.84 -0.19 0.51 16 7 C -0.22 -3.59 6.29 -103.35 -0.65 -4.24 16 8 C 0.59 10.80 7.81 -12.60 -0.10 10.70 16 9 O -0.56 -11.72 15.32 5.25 0.08 -11.64 16 10 N -0.71 -12.51 5.38 -61.44 -0.33 -12.84 16 11 C 0.12 2.16 5.22 -4.04 -0.02 2.14 16 12 C 0.19 3.60 2.70 -67.94 -0.18 3.42 16 13 H 0.05 1.02 7.84 -51.93 -0.41 0.61 16 14 N -0.72 -16.29 4.54 -53.43 -0.24 -16.53 16 15 C -0.24 -5.91 8.63 -15.06 -0.13 -6.04 16 16 H 0.07 1.73 6.91 -52.49 -0.36 1.36 16 17 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 18 N -0.93 -26.53 13.06 55.49 0.72 -25.80 16 19 Si 0.90 21.21 29.55 -169.99 -5.02 16.18 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 C -0.16 -2.79 5.36 -90.62 -0.49 -3.27 16 24 C -0.20 -3.01 10.18 -26.70 -0.27 -3.28 16 25 C -0.16 -2.79 9.78 -26.70 -0.26 -3.05 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.08 1.23 6.85 -51.93 -0.36 0.87 16 29 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 30 H 0.18 2.06 7.45 -52.48 -0.39 1.67 16 31 H 0.41 6.99 7.08 -40.82 -0.29 6.70 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.39 9.70 7.80 -40.82 -0.32 9.38 16 35 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.09 1.57 8.11 -51.93 -0.42 1.15 16 37 H 0.09 1.27 8.05 -51.93 -0.42 0.85 16 38 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 40 H 0.10 2.06 6.23 -51.93 -0.32 1.74 16 LS Contribution 336.58 15.07 5.07 5.07 Total: -1.00 -31.19 336.58 -8.42 -39.61 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: -5.75 Total: 18.74 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -2.88 Total: -7.01 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: 0.08 Total: -60.96 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.08 Total: -11.64 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.19 -8.42 -39.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661192549.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.504 kcal (2) G-P(sol) polarization free energy of solvation -31.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds