Wall clock time and date at job start Mon Mar 30 2020 02:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34492 * 126.83046 * 2 1 4 4 N 1.36445 * 108.85429 * 180.02562 * 3 2 1 5 5 H 0.96996 * 124.84970 * 180.02562 * 4 3 2 6 6 C 1.34652 * 110.30117 * 0.02562 * 4 3 2 7 7 C 1.36775 * 108.39813 * 359.97438 * 6 4 3 8 8 C 1.47253 * 126.94353 * 179.74341 * 7 6 4 9 9 O 1.21634 * 120.00038 * 180.02562 * 8 7 6 10 10 N 1.34774 * 120.00320 * 0.02562 * 8 7 6 11 11 C 1.46503 * 120.00682 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.47522 * 179.97438 * 11 10 8 13 13 H 1.09001 * 109.46979 * 65.00248 * 12 11 10 14 14 N 1.46501 * 109.47253 * 304.99786 * 12 11 10 15 15 C 1.36937 * 119.99817 * 154.99539 * 14 12 11 16 16 H 1.07998 * 120.00151 * 0.02562 * 15 14 12 17 17 C 1.38807 * 119.99894 * 180.02562 * 15 14 12 18 18 N 1.31627 * 120.00055 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00097 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47092 * 90.00545 * 19 17 15 21 21 H 1.48501 * 109.47434 * 210.00141 * 19 17 15 22 22 H 1.48495 * 109.47627 * 330.00642 * 19 17 15 23 23 C 1.52994 * 109.47102 * 185.00065 * 12 11 10 24 24 C 1.52999 * 117.50060 * 248.74967 * 23 12 11 25 25 C 1.52998 * 117.49971 * 180.08989 * 23 12 11 26 26 H 1.08996 * 109.47378 * 269.97312 * 1 2 3 27 27 H 1.08997 * 109.47539 * 29.97852 * 1 2 3 28 28 H 1.09002 * 109.47261 * 149.97663 * 1 2 3 29 29 H 1.07995 * 125.56876 * 0.06208 * 3 2 1 30 30 H 1.08003 * 125.80592 * 180.02562 * 6 4 3 31 31 H 0.97002 * 119.99925 * 359.97438 * 10 8 7 32 32 H 1.09000 * 109.46727 * 300.00248 * 11 10 8 33 33 H 1.09002 * 109.46678 * 59.99418 * 11 10 8 34 34 H 0.96999 * 120.00137 * 335.00300 * 14 12 11 35 35 H 0.97001 * 119.99816 * 180.02562 * 18 17 15 36 36 H 1.09000 * 115.55349 * 34.41526 * 23 12 11 37 37 H 1.09000 * 117.49668 * 359.97438 * 24 23 12 38 38 H 1.08994 * 117.50203 * 145.02228 * 24 23 12 39 39 H 1.09002 * 117.50038 * 214.97985 * 25 23 12 40 40 H 1.08999 * 117.50036 * 359.97057 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0765 0.0000 4 7 3.6110 0.6554 -0.0006 5 1 4.3839 1.2415 -0.0003 6 6 3.6657 -0.6900 -0.0015 7 6 2.3864 -1.1740 -0.0010 8 6 1.9751 -2.5879 -0.0069 9 8 0.7937 -2.8776 -0.0062 10 7 2.9075 -3.5610 -0.0133 11 6 2.4983 -4.9677 -0.0197 12 6 3.7409 -5.8603 -0.0268 13 1 4.2911 -5.7244 0.9043 14 7 4.5975 -5.4960 -1.1580 15 6 5.9416 -5.7533 -1.1097 16 1 6.3701 -6.2252 -0.2378 17 6 6.7534 -5.4077 -2.1813 18 7 6.2313 -4.8321 -3.2437 19 14 8.5868 -5.7593 -2.1157 20 1 8.8518 -7.1106 -2.6716 21 1 9.3148 -4.7430 -2.9172 22 1 9.0515 -5.7040 -0.7064 23 6 3.3165 -7.3242 -0.1593 24 6 3.5305 -8.2343 1.0519 25 6 4.4225 -8.3811 -0.1834 26 1 -0.3634 -0.0005 1.0276 27 1 -0.3634 0.8901 -0.5135 28 1 -0.3634 -0.8898 -0.5142 29 1 1.9866 2.1059 0.0010 30 1 4.5665 -1.2858 -0.0017 31 1 3.8496 -3.3300 -0.0143 32 1 1.9048 -5.1775 0.8701 33 1 1.9020 -5.1685 -0.9098 34 1 4.2127 -5.0724 -1.9412 35 1 6.7985 -4.5909 -3.9927 36 1 2.4348 -7.5043 -0.7744 37 1 3.9742 -7.7901 1.9430 38 1 2.7901 -9.0132 1.2333 39 1 4.2685 -9.2566 -0.8141 40 1 5.4526 -8.0334 -0.1053 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661192549.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:17 Heat of formation + Delta-G solvation = 17.173014 kcal Electronic energy + Delta-G solvation = -21332.458562 eV Core-core repulsion = 18147.877649 eV Total energy + Delta-G solvation = -3184.580913 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.02931 -40.15044 -38.86175 -36.02950 -35.09292 -33.28627 -32.79406 -31.04951 -29.22447 -27.38748 -25.69836 -24.46505 -23.04818 -22.90114 -21.31595 -20.64971 -20.15049 -19.26399 -18.99448 -17.20420 -16.86931 -16.66364 -16.17904 -15.95642 -15.49274 -15.12594 -14.88850 -14.82186 -14.60695 -14.31078 -13.82931 -13.59512 -13.53005 -13.23069 -12.96727 -12.86944 -12.64305 -12.40706 -12.28616 -12.21010 -11.96411 -11.70390 -11.03016 -10.98068 -10.79599 -10.68772 -10.00854 -9.46825 -9.13327 -8.97278 -7.85779 -5.13629 0.83725 1.50278 1.52708 1.54679 1.59020 2.34198 2.54296 2.60831 2.66275 3.10190 3.50837 3.83011 4.02591 4.04362 4.12709 4.20845 4.33754 4.38662 4.41868 4.48516 4.61795 4.70304 4.77315 4.91538 4.92401 4.94604 4.98417 5.17517 5.19956 5.20333 5.38255 5.42100 5.49796 5.63564 5.65479 5.88718 6.00623 6.33216 6.70921 6.79687 7.41531 7.44199 8.12593 8.39092 9.36982 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014910 B = 0.005250 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.520638 B = 5331.892563 C = 6839.500847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.151 4.151 3 C -0.008 4.008 4 N -0.533 5.533 5 H 0.436 0.564 6 C 0.061 3.939 7 C -0.267 4.267 8 C 0.579 3.421 9 O -0.594 6.594 10 N -0.711 5.711 11 C 0.130 3.870 12 C 0.199 3.801 13 H 0.059 0.941 14 N -0.722 5.722 15 C -0.216 4.216 16 H 0.078 0.922 17 C -0.069 4.069 18 N -0.967 5.967 19 Si 0.960 3.040 20 H -0.297 1.297 21 H -0.301 1.301 22 H -0.268 1.268 23 C -0.175 4.175 24 C -0.162 4.162 25 C -0.172 4.172 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.045 0.955 29 H 0.207 0.793 30 H 0.185 0.815 31 H 0.408 0.592 32 H 0.075 0.925 33 H 0.046 0.954 34 H 0.372 0.628 35 H 0.247 0.753 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.924 9.272 9.662 14.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.157 4.157 3 C -0.136 4.136 4 N -0.128 5.128 5 H 0.276 0.724 6 C -0.078 4.078 7 C -0.277 4.277 8 C 0.369 3.631 9 O -0.477 6.477 10 N -0.361 5.361 11 C 0.006 3.994 12 C 0.090 3.910 13 H 0.077 0.923 14 N -0.362 5.362 15 C -0.348 4.348 16 H 0.095 0.905 17 C -0.261 4.261 18 N -0.618 5.618 19 Si 0.790 3.210 20 H -0.224 1.224 21 H -0.229 1.229 22 H -0.193 1.193 23 C -0.196 4.196 24 C -0.199 4.199 25 C -0.210 4.210 26 H 0.081 0.919 27 H 0.100 0.900 28 H 0.064 0.936 29 H 0.224 0.776 30 H 0.202 0.798 31 H 0.244 0.756 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.204 0.796 35 H 0.056 0.944 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.124 0.876 39 H 0.104 0.896 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.460 9.134 9.747 14.431 hybrid contribution 1.664 -0.148 -0.906 1.901 sum -3.796 8.986 8.841 13.165 Atomic orbital electron populations 1.20090 0.89456 1.02053 1.01669 1.20830 0.96196 0.90972 1.07689 1.22045 0.82054 0.99936 1.09577 1.41514 1.09008 1.06037 1.56275 0.72359 1.22162 0.98244 0.84984 1.02369 1.20477 0.94510 0.92178 1.20557 1.17861 0.84932 0.85295 0.74982 1.90658 1.18703 1.84644 1.53665 1.45772 1.10108 1.05779 1.74445 1.21417 0.96657 0.80178 1.01173 1.20132 0.89474 0.90034 0.91400 0.92343 1.42560 1.04272 1.71746 1.17578 1.19462 0.84568 1.30446 1.00341 0.90462 1.25345 1.01230 1.02820 0.96750 1.69825 1.35338 1.49222 1.07461 0.85341 0.81720 0.76442 0.77448 1.22444 1.22852 1.19304 1.22925 1.00342 0.93829 1.02531 1.23032 1.02746 1.02244 0.91908 1.22734 0.96582 1.00126 1.01532 0.91946 0.89989 0.93610 0.77611 0.79829 0.75623 0.90635 0.93572 0.79599 0.94442 0.89030 0.88525 0.87587 0.89642 0.89956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.97 9.98 71.23 0.71 -1.26 16 2 C -0.15 -4.17 6.35 -18.51 -0.12 -4.29 16 3 C -0.01 -0.15 11.82 83.12 0.98 0.83 16 4 N -0.53 -9.49 5.90 -194.56 -1.15 -10.64 16 5 H 0.44 4.31 8.96 -92.71 -0.83 3.48 16 6 C 0.06 1.52 11.40 83.92 0.96 2.48 16 7 C -0.27 -8.56 6.29 -19.04 -0.12 -8.68 16 8 C 0.58 22.02 7.81 86.61 0.68 22.69 16 9 O -0.59 -25.99 15.32 -4.14 -0.06 -26.05 16 10 N -0.71 -25.40 5.38 -466.53 -2.51 -27.91 16 11 C 0.13 4.66 5.22 86.38 0.45 5.11 16 12 C 0.20 7.34 2.70 44.99 0.12 7.46 16 13 H 0.06 2.13 7.84 -2.39 -0.02 2.11 16 14 N -0.72 -33.06 4.54 -322.96 -1.47 -34.52 16 15 C -0.22 -10.81 8.63 84.03 0.73 -10.09 16 16 H 0.08 3.72 6.91 -2.91 -0.02 3.70 16 17 C -0.07 -3.70 5.50 84.86 0.47 -3.24 16 18 N -0.97 -56.32 13.06 21.65 0.28 -56.04 16 19 Si 0.96 43.78 29.55 68.60 2.03 45.81 16 20 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16 21 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 22 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 23 C -0.17 -5.97 5.36 -10.80 -0.06 -6.02 16 24 C -0.16 -4.50 10.18 30.62 0.31 -4.19 16 25 C -0.17 -5.91 9.78 30.62 0.30 -5.61 16 26 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.04 1.48 6.85 -2.39 -0.02 1.47 16 29 H 0.21 2.16 8.06 -2.91 -0.02 2.14 16 30 H 0.18 4.15 7.45 -2.91 -0.02 4.12 16 31 H 0.41 14.18 7.08 -92.71 -0.66 13.53 16 32 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.37 19.15 7.80 -92.71 -0.72 18.42 16 35 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 36 H 0.09 3.12 8.11 -2.39 -0.02 3.10 16 37 H 0.10 2.53 8.05 -2.39 -0.02 2.51 16 38 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 40 H 0.08 3.19 6.23 -2.39 -0.01 3.17 16 Total: -1.00 -68.87 336.58 1.40 -67.47 By element: Atomic # 1 Polarization: 47.82 SS G_CDS: -1.13 Total: 46.69 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: 5.41 Total: -4.80 kcal Atomic # 7 Polarization: -124.27 SS G_CDS: -4.84 Total: -129.11 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.06 Total: -26.05 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -68.87 1.40 -67.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661192549.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.644 kcal (2) G-P(sol) polarization free energy of solvation -68.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds