Wall clock time and date at job start Mon Mar 30 2020 02:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34485 * 126.83045 * 2 1 4 4 N 1.36448 * 108.85344 * 180.02562 * 3 2 1 5 5 H 0.97007 * 124.84908 * 180.02562 * 4 3 2 6 6 C 1.34662 * 110.29998 * 359.75067 * 4 3 2 7 7 C 1.36767 * 108.39154 * 0.40652 * 6 4 3 8 8 C 1.47271 * 126.93947 * 179.86739 * 7 6 4 9 9 O 1.21624 * 120.00114 * 179.68416 * 8 7 6 10 10 N 1.34771 * 119.99652 * 359.69168 * 8 7 6 11 11 C 1.47020 * 125.65393 * 359.95364 * 10 8 7 12 12 C 1.54368 * 107.29315 * 178.94554 * 11 10 8 13 13 C 1.55159 * 102.92036 * 337.85855 * 12 11 10 14 14 H 1.08999 * 111.00743 * 277.36675 * 13 12 11 15 15 C 1.52993 * 111.00659 * 153.54509 * 13 12 11 16 16 N 1.46496 * 109.47551 * 178.18098 * 15 13 12 17 17 C 1.36934 * 120.00548 * 179.97438 * 16 15 13 18 18 H 1.08004 * 119.99288 * 0.02562 * 17 16 15 19 19 C 1.38805 * 120.00389 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00257 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47174 * 270.00277 * 21 19 17 23 23 H 1.48501 * 109.47062 * 30.00228 * 21 19 17 24 24 H 1.48499 * 109.46981 * 150.00382 * 21 19 17 25 25 C 1.47427 * 125.64743 * 179.97438 * 10 8 7 26 26 H 1.09003 * 109.46767 * 269.97112 * 1 2 3 27 27 H 1.08999 * 109.47540 * 29.97407 * 1 2 3 28 28 H 1.08997 * 109.47216 * 149.97658 * 1 2 3 29 29 H 1.07998 * 125.57771 * 0.04333 * 3 2 1 30 30 H 1.07998 * 125.80282 * 180.29406 * 6 4 3 31 31 H 1.09002 * 109.88388 * 298.39753 * 11 10 8 32 32 H 1.09005 * 109.88005 * 59.40142 * 11 10 8 33 33 H 1.09000 * 110.75831 * 219.49646 * 12 11 10 34 34 H 1.09001 * 110.70732 * 96.20369 * 12 11 10 35 35 H 1.09004 * 109.46862 * 58.18296 * 15 13 12 36 36 H 1.09004 * 109.46998 * 298.18774 * 15 13 12 37 37 H 0.96999 * 119.99694 * 0.02562 * 16 15 13 38 38 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 39 39 H 1.09000 * 110.36373 * 85.25362 * 25 10 8 40 40 H 1.08998 * 110.45921 * 322.97580 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6110 0.6553 -0.0006 5 1 4.3840 1.2415 -0.0003 6 6 3.6656 -0.6902 0.0045 7 6 2.3864 -1.1740 -0.0006 8 6 1.9749 -2.5880 -0.0005 9 8 0.7937 -2.8777 0.0003 10 7 2.9074 -3.5611 -0.0011 11 6 4.3628 -3.3533 -0.0030 12 6 5.0254 -4.7473 0.0241 13 6 3.9083 -5.6511 0.6094 14 1 3.8902 -5.5946 1.6978 15 6 4.0720 -7.0983 0.1410 16 7 3.0281 -7.9287 0.7466 17 6 2.9732 -9.2689 0.4708 18 1 3.6999 -9.7137 -0.1930 19 6 1.9837 -10.0556 1.0441 20 7 1.9313 -11.3439 0.7794 21 14 0.7274 -9.2862 2.1927 22 1 1.2328 -9.3417 3.5879 23 1 0.5024 -7.8709 1.8036 24 1 -0.5519 -10.0345 2.0995 25 6 2.6369 -5.0103 -0.0006 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3634 0.8902 -0.5134 28 1 -0.3633 -0.8897 -0.5142 29 1 1.9868 2.1059 0.0007 30 1 4.5664 -1.2859 0.0098 31 1 4.6599 -2.8187 -0.9053 32 1 4.6571 -2.7839 0.8788 33 1 5.9007 -4.7465 0.6737 34 1 5.2918 -5.0670 -0.9834 35 1 5.0517 -7.4692 0.4425 36 1 3.9859 -7.1407 -0.9448 37 1 2.3753 -7.5291 1.3424 38 1 1.2400 -11.8936 1.1804 39 1 2.4832 -5.3679 -1.0187 40 1 1.7661 -5.2351 0.6152 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662723980.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:47 Heat of formation + Delta-G solvation = 30.635158 kcal Electronic energy + Delta-G solvation = -21267.210742 eV Core-core repulsion = 18083.213592 eV Total energy + Delta-G solvation = -3183.997150 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.43866 -39.56587 -37.41327 -34.83277 -32.58268 -32.37938 -30.85652 -30.10017 -28.70374 -26.70312 -25.71677 -23.96146 -21.98885 -21.56966 -20.42618 -19.99832 -18.93711 -17.92381 -17.45566 -16.51694 -16.03708 -15.19580 -14.77804 -14.50532 -14.17676 -14.07222 -13.70183 -13.64619 -13.37627 -12.83799 -12.78706 -12.62585 -12.54399 -12.47857 -12.14847 -11.81540 -11.71369 -11.44507 -10.91388 -10.64708 -10.60933 -10.46145 -10.07844 -9.70947 -9.55102 -8.87006 -8.85545 -8.50783 -8.46411 -7.20590 -5.73532 -3.09353 1.63123 2.21271 2.89821 3.17899 3.43507 3.48673 3.51471 3.56967 4.49598 4.54728 4.63943 4.64315 4.78791 4.86855 4.96156 5.16809 5.22285 5.29991 5.41590 5.51164 5.57840 5.63533 5.77438 5.80043 5.81138 5.86138 5.94798 5.95807 6.13811 6.22049 6.24477 6.44244 6.61259 6.65675 6.69222 6.73952 7.18225 7.67286 8.01761 8.40692 8.45408 9.24262 9.96909 10.16012 11.44774 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027306 B = 0.003906 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.151728 B = 7165.826207 C = 7988.129326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.109 4.109 3 C -0.029 4.029 4 N -0.552 5.552 5 H 0.416 0.584 6 C 0.032 3.968 7 C -0.220 4.220 8 C 0.599 3.401 9 O -0.541 6.541 10 N -0.618 5.618 11 C 0.096 3.904 12 C -0.125 4.125 13 C -0.111 4.111 14 H 0.084 0.916 15 C 0.169 3.831 16 N -0.757 5.757 17 C -0.245 4.245 18 H 0.090 0.910 19 C 0.005 3.995 20 N -0.935 5.935 21 Si 0.882 3.118 22 H -0.284 1.284 23 H -0.275 1.275 24 H -0.290 1.290 25 C 0.115 3.885 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.168 0.832 30 H 0.182 0.818 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.033 0.967 36 H 0.030 0.970 37 H 0.361 0.639 38 H 0.259 0.741 39 H 0.073 0.927 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.649 28.054 -1.715 29.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C -0.157 4.157 4 N -0.147 5.147 5 H 0.252 0.748 6 C -0.103 4.103 7 C -0.231 4.231 8 C 0.390 3.610 9 O -0.419 6.419 10 N -0.352 5.352 11 C -0.027 4.027 12 C -0.163 4.163 13 C -0.130 4.130 14 H 0.102 0.898 15 C 0.042 3.958 16 N -0.402 5.402 17 C -0.375 4.375 18 H 0.108 0.892 19 C -0.190 4.190 20 N -0.582 5.582 21 Si 0.712 3.288 22 H -0.211 1.211 23 H -0.201 1.201 24 H -0.216 1.216 25 C -0.007 4.007 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.185 0.815 30 H 0.199 0.801 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.051 0.949 36 H 0.048 0.952 37 H 0.194 0.806 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.083 27.838 -1.824 28.783 hybrid contribution -0.441 0.697 0.861 1.192 sum 6.642 28.535 -0.963 29.313 Atomic orbital electron populations 1.20201 0.89308 1.02598 1.02022 1.20578 0.95694 0.90313 1.04979 1.21570 0.82521 0.99136 1.12449 1.41542 1.08218 1.06771 1.58124 0.74752 1.22702 0.99299 0.83732 1.04592 1.20364 0.92738 0.92662 1.17289 1.17068 0.84504 0.83405 0.76057 1.90765 1.16714 1.83406 1.51017 1.48374 1.06022 1.06939 1.73853 1.22298 0.81079 0.98565 1.00749 1.22673 0.98088 0.92989 1.02594 1.22641 0.93621 0.96026 1.00720 0.89764 1.20562 0.92653 0.86413 0.96185 1.42728 1.33882 1.06668 1.56963 1.19040 1.11944 0.82421 1.24076 0.89184 1.24662 0.98812 0.95359 1.00199 1.69704 1.36208 1.04317 1.48019 0.86578 0.81933 0.78797 0.81479 1.21083 1.20095 1.21646 1.22310 0.98711 0.77895 1.01742 0.91814 0.92430 0.90227 0.81497 0.80083 0.91381 0.91409 0.89831 0.90016 0.94948 0.95193 0.80579 0.93056 0.90883 0.90298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 9.98 36.01 0.36 -0.61 16 2 C -0.11 -1.29 6.35 -102.54 -0.65 -1.95 16 3 C -0.03 -0.24 11.82 -16.82 -0.20 -0.44 16 4 N -0.55 -3.65 5.90 -12.85 -0.08 -3.72 16 5 H 0.42 1.15 8.96 -40.82 -0.37 0.79 16 6 C 0.03 0.29 10.42 -16.84 -0.18 0.11 16 7 C -0.22 -2.85 6.26 -103.35 -0.65 -3.50 16 8 C 0.60 9.73 7.84 -12.59 -0.10 9.63 16 9 O -0.54 -10.86 15.58 5.26 0.08 -10.78 16 10 N -0.62 -8.85 3.33 -171.82 -0.57 -9.42 16 11 C 0.10 0.94 5.01 -3.04 -0.02 0.92 16 12 C -0.13 -1.28 6.42 -24.87 -0.16 -1.44 16 13 C -0.11 -1.62 3.07 -88.48 -0.27 -1.89 16 14 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 15 C 0.17 3.14 5.71 -4.05 -0.02 3.12 16 16 N -0.76 -18.10 5.30 -59.91 -0.32 -18.42 16 17 C -0.25 -7.02 10.47 -15.06 -0.16 -7.18 16 18 H 0.09 2.74 8.06 -52.48 -0.42 2.31 16 19 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 20 N -0.93 -29.84 13.97 55.49 0.78 -29.06 16 21 Si 0.88 22.84 27.74 -169.99 -4.71 18.13 16 22 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.27 -6.84 6.52 56.52 0.37 -6.47 16 24 H -0.29 -7.61 7.11 56.52 0.40 -7.20 16 25 C 0.12 1.88 6.23 -2.53 -0.02 1.87 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.08 1.12 6.85 -51.93 -0.36 0.76 16 29 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 30 H 0.18 1.11 4.42 -52.49 -0.23 0.87 16 31 H 0.07 0.53 7.05 -51.93 -0.37 0.16 16 32 H 0.07 0.54 6.84 -51.93 -0.36 0.19 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.80 8.04 -51.93 -0.42 0.38 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.03 0.57 8.04 -51.93 -0.42 0.15 16 37 H 0.36 8.59 5.49 -40.82 -0.22 8.37 16 38 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 39 H 0.07 1.24 7.96 -51.93 -0.41 0.83 16 40 H 0.08 1.49 8.04 -51.93 -0.42 1.07 16 LS Contribution 324.44 15.07 4.89 4.89 Total: -1.00 -36.89 324.44 -7.78 -44.67 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -5.69 Total: 5.01 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -2.15 Total: -1.28 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -0.19 Total: -60.63 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.08 Total: -10.78 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.71 Total: 18.13 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -36.89 -7.78 -44.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662723980.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.306 kcal (2) G-P(sol) polarization free energy of solvation -36.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds