Wall clock time and date at job start Mon Mar 30 2020 02:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34485 * 126.83045 * 2 1 4 4 N 1.36448 * 108.85344 * 180.02562 * 3 2 1 5 5 H 0.97007 * 124.84908 * 180.02562 * 4 3 2 6 6 C 1.34662 * 110.29998 * 359.75067 * 4 3 2 7 7 C 1.36767 * 108.39154 * 0.40652 * 6 4 3 8 8 C 1.47271 * 126.93947 * 179.86739 * 7 6 4 9 9 O 1.21624 * 120.00114 * 179.68416 * 8 7 6 10 10 N 1.34771 * 119.99652 * 359.69168 * 8 7 6 11 11 C 1.47020 * 125.65393 * 359.95364 * 10 8 7 12 12 C 1.54368 * 107.29315 * 178.94554 * 11 10 8 13 13 C 1.55159 * 102.92036 * 337.85855 * 12 11 10 14 14 H 1.08999 * 111.00743 * 277.36675 * 13 12 11 15 15 C 1.52993 * 111.00659 * 153.54509 * 13 12 11 16 16 N 1.46496 * 109.47551 * 178.18098 * 15 13 12 17 17 C 1.36934 * 120.00548 * 179.97438 * 16 15 13 18 18 H 1.08004 * 119.99288 * 0.02562 * 17 16 15 19 19 C 1.38805 * 120.00389 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00257 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47174 * 270.00277 * 21 19 17 23 23 H 1.48501 * 109.47062 * 30.00228 * 21 19 17 24 24 H 1.48499 * 109.46981 * 150.00382 * 21 19 17 25 25 C 1.47427 * 125.64743 * 179.97438 * 10 8 7 26 26 H 1.09003 * 109.46767 * 269.97112 * 1 2 3 27 27 H 1.08999 * 109.47540 * 29.97407 * 1 2 3 28 28 H 1.08997 * 109.47216 * 149.97658 * 1 2 3 29 29 H 1.07998 * 125.57771 * 0.04333 * 3 2 1 30 30 H 1.07998 * 125.80282 * 180.29406 * 6 4 3 31 31 H 1.09002 * 109.88388 * 298.39753 * 11 10 8 32 32 H 1.09005 * 109.88005 * 59.40142 * 11 10 8 33 33 H 1.09000 * 110.75831 * 219.49646 * 12 11 10 34 34 H 1.09001 * 110.70732 * 96.20369 * 12 11 10 35 35 H 1.09004 * 109.46862 * 58.18296 * 15 13 12 36 36 H 1.09004 * 109.46998 * 298.18774 * 15 13 12 37 37 H 0.96999 * 119.99694 * 0.02562 * 16 15 13 38 38 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 39 39 H 1.09000 * 110.36373 * 85.25362 * 25 10 8 40 40 H 1.08998 * 110.45921 * 322.97580 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6110 0.6553 -0.0006 5 1 4.3840 1.2415 -0.0003 6 6 3.6656 -0.6902 0.0045 7 6 2.3864 -1.1740 -0.0006 8 6 1.9749 -2.5880 -0.0005 9 8 0.7937 -2.8777 0.0003 10 7 2.9074 -3.5611 -0.0011 11 6 4.3628 -3.3533 -0.0030 12 6 5.0254 -4.7473 0.0241 13 6 3.9083 -5.6511 0.6094 14 1 3.8902 -5.5946 1.6978 15 6 4.0720 -7.0983 0.1410 16 7 3.0281 -7.9287 0.7466 17 6 2.9732 -9.2689 0.4708 18 1 3.6999 -9.7137 -0.1930 19 6 1.9837 -10.0556 1.0441 20 7 1.9313 -11.3439 0.7794 21 14 0.7274 -9.2862 2.1927 22 1 1.2328 -9.3417 3.5879 23 1 0.5024 -7.8709 1.8036 24 1 -0.5519 -10.0345 2.0995 25 6 2.6369 -5.0103 -0.0006 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3634 0.8902 -0.5134 28 1 -0.3633 -0.8897 -0.5142 29 1 1.9868 2.1059 0.0007 30 1 4.5664 -1.2859 0.0098 31 1 4.6599 -2.8187 -0.9053 32 1 4.6571 -2.7839 0.8788 33 1 5.9007 -4.7465 0.6737 34 1 5.2918 -5.0670 -0.9834 35 1 5.0517 -7.4692 0.4425 36 1 3.9859 -7.1407 -0.9448 37 1 2.3753 -7.5291 1.3424 38 1 1.2400 -11.8936 1.1804 39 1 2.4832 -5.3679 -1.0187 40 1 1.7661 -5.2351 0.6152 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662723980.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:46 Heat of formation + Delta-G solvation = 3.219666 kcal Electronic energy + Delta-G solvation = -21268.399567 eV Core-core repulsion = 18083.213592 eV Total energy + Delta-G solvation = -3185.185975 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.18220 -40.62739 -38.66115 -36.59085 -34.08976 -33.34226 -32.54950 -30.98626 -29.91291 -27.47048 -27.21835 -25.29233 -23.62454 -22.51716 -21.59084 -20.97683 -19.85154 -19.53868 -18.57390 -17.52858 -17.25562 -16.59333 -16.24431 -15.82091 -15.47054 -15.15801 -14.86719 -14.73321 -14.57295 -14.21541 -13.96268 -13.78401 -13.66974 -13.60435 -13.44149 -13.24751 -12.90620 -12.81126 -12.32252 -12.20610 -11.94735 -11.87624 -11.74219 -11.58796 -11.01905 -10.90657 -9.80776 -9.45435 -9.30607 -9.17931 -8.05276 -5.37445 0.77730 1.34888 1.37853 1.43924 1.49161 1.98790 2.45054 2.48807 2.53049 3.26082 3.38399 3.63545 3.77059 3.93755 3.99265 4.10060 4.25301 4.28721 4.41264 4.46456 4.55474 4.64503 4.67965 4.79015 4.85989 4.87776 4.90693 5.01229 5.07423 5.11335 5.21337 5.31417 5.34955 5.43377 5.74681 5.82354 5.96914 6.19679 6.61229 6.72663 7.06058 7.27234 7.83530 7.99799 9.16368 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027306 B = 0.003906 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.151728 B = 7165.826207 C = 7988.129326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.156 4.156 3 C -0.005 4.005 4 N -0.531 5.531 5 H 0.440 0.560 6 C 0.062 3.938 7 C -0.268 4.268 8 C 0.586 3.414 9 O -0.602 6.602 10 N -0.618 5.618 11 C 0.090 3.910 12 C -0.112 4.112 13 C -0.101 4.101 14 H 0.085 0.915 15 C 0.165 3.835 16 N -0.763 5.763 17 C -0.231 4.231 18 H 0.064 0.936 19 C -0.060 4.060 20 N -0.982 5.982 21 Si 0.947 3.053 22 H -0.273 1.273 23 H -0.265 1.265 24 H -0.295 1.295 25 C 0.115 3.885 26 H 0.056 0.944 27 H 0.082 0.918 28 H 0.041 0.959 29 H 0.203 0.797 30 H 0.214 0.786 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.116 0.884 34 H 0.089 0.911 35 H 0.044 0.956 36 H 0.028 0.972 37 H 0.362 0.638 38 H 0.258 0.742 39 H 0.057 0.943 40 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.524 32.056 -1.184 33.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.162 4.162 3 C -0.133 4.133 4 N -0.127 5.127 5 H 0.281 0.719 6 C -0.076 4.076 7 C -0.278 4.278 8 C 0.380 3.620 9 O -0.485 6.485 10 N -0.351 5.351 11 C -0.031 4.031 12 C -0.150 4.150 13 C -0.120 4.120 14 H 0.103 0.897 15 C 0.039 3.961 16 N -0.408 5.408 17 C -0.362 4.362 18 H 0.082 0.918 19 C -0.252 4.252 20 N -0.633 5.633 21 Si 0.775 3.225 22 H -0.199 1.199 23 H -0.190 1.190 24 H -0.222 1.222 25 C -0.008 4.008 26 H 0.074 0.926 27 H 0.101 0.899 28 H 0.060 0.940 29 H 0.220 0.780 30 H 0.230 0.770 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.134 0.866 34 H 0.108 0.892 35 H 0.062 0.938 36 H 0.046 0.954 37 H 0.195 0.805 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 10.055 31.921 -1.300 33.493 hybrid contribution -1.229 -0.492 0.606 1.455 sum 8.827 31.429 -0.694 32.653 Atomic orbital electron populations 1.20093 0.90335 1.01900 1.01353 1.20801 0.95868 0.91546 1.07982 1.21967 0.82450 0.99640 1.09254 1.41592 1.08700 1.06423 1.55961 0.71895 1.22981 0.98509 0.84653 1.01468 1.20287 0.95151 0.90946 1.21452 1.17761 0.84004 0.85108 0.75145 1.90718 1.19272 1.84460 1.54010 1.48435 1.08082 1.05442 1.73098 1.22669 0.77836 0.98979 1.03588 1.22713 0.97291 0.91601 1.03401 1.22478 0.94804 0.94023 1.00724 0.89656 1.20776 0.91375 0.88152 0.95759 1.42834 1.35281 1.05481 1.57240 1.19082 1.10460 0.84444 1.22184 0.91826 1.25407 1.01321 0.95837 1.02632 1.69862 1.37457 1.05921 1.50053 0.85525 0.79031 0.78178 0.79757 1.19922 1.19018 1.22158 1.22111 0.98435 0.80107 1.00186 0.92565 0.89895 0.94035 0.77988 0.76951 0.88392 0.88509 0.86581 0.89232 0.93824 0.95401 0.80496 0.93308 0.92454 0.94048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.90 9.98 71.24 0.71 -1.19 16 2 C -0.16 -3.51 6.35 -18.52 -0.12 -3.63 16 3 C 0.00 -0.06 11.82 83.12 0.98 0.92 16 4 N -0.53 -4.29 5.90 -194.56 -1.15 -5.44 16 5 H 0.44 -0.28 8.96 -92.70 -0.83 -1.11 16 6 C 0.06 0.82 10.42 83.91 0.87 1.69 16 7 C -0.27 -6.59 6.26 -19.04 -0.12 -6.71 16 8 C 0.59 19.47 7.84 86.62 0.68 20.15 16 9 O -0.60 -26.07 15.58 -4.11 -0.06 -26.14 16 10 N -0.62 -17.20 3.33 -815.77 -2.71 -19.91 16 11 C 0.09 1.38 5.01 86.74 0.43 1.82 16 12 C -0.11 -1.83 6.42 31.80 0.20 -1.63 16 13 C -0.10 -2.79 3.07 -9.41 -0.03 -2.82 16 14 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 15 C 0.17 6.00 5.71 86.38 0.49 6.49 16 16 N -0.76 -36.63 5.30 -343.47 -1.82 -38.45 16 17 C -0.23 -13.47 10.47 84.03 0.88 -12.59 16 18 H 0.06 3.99 8.06 -2.91 -0.02 3.97 16 19 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 20 N -0.98 -64.49 13.97 21.65 0.30 -64.19 16 21 Si 0.95 48.27 27.74 68.60 1.90 50.17 16 22 H -0.27 -13.36 7.11 99.48 0.71 -12.66 16 23 H -0.26 -12.88 6.52 99.48 0.65 -12.24 16 24 H -0.29 -15.17 7.11 99.48 0.71 -14.47 16 25 C 0.11 3.82 6.23 86.85 0.54 4.36 16 26 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 28 H 0.04 1.28 6.85 -2.39 -0.02 1.27 16 29 H 0.20 1.04 8.06 -2.91 -0.02 1.01 16 30 H 0.21 1.27 4.42 -2.91 -0.01 1.26 16 31 H 0.10 0.99 7.05 -2.39 -0.02 0.97 16 32 H 0.10 0.99 6.84 -2.38 -0.02 0.97 16 33 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.09 1.38 8.04 -2.39 -0.02 1.36 16 35 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.03 1.04 8.04 -2.39 -0.02 1.02 16 37 H 0.36 17.23 5.49 -92.71 -0.51 16.72 16 38 H 0.26 16.16 8.31 -92.71 -0.77 15.39 16 39 H 0.06 2.04 7.96 -2.39 -0.02 2.02 16 40 H 0.04 1.66 8.04 -2.39 -0.02 1.64 16 Total: -1.00 -87.49 324.44 2.13 -85.36 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -0.33 Total: 14.95 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: 6.00 Total: 3.65 kcal Atomic # 7 Polarization: -122.61 SS G_CDS: -5.38 Total: -127.99 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.06 Total: -26.14 kcal Atomic # 14 Polarization: 48.27 SS G_CDS: 1.90 Total: 50.17 kcal Total: -87.49 2.13 -85.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662723980.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.582 kcal (2) G-P(sol) polarization free energy of solvation -87.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds