Wall clock time and date at job start Mon Mar 30 2020 02:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34486 * 126.83289 * 2 1 4 4 N 1.36446 * 108.85816 * 180.25668 * 3 2 1 5 5 H 0.96994 * 124.85884 * 179.77191 * 4 3 2 6 6 C 1.34663 * 110.29407 * 359.74510 * 4 3 2 7 7 C 1.36764 * 108.39812 * 0.02562 * 6 4 3 8 8 C 1.47263 * 126.94143 * 179.97438 * 7 6 4 9 9 O 1.21629 * 120.00025 * 180.02562 * 8 7 6 10 10 N 1.34774 * 120.00037 * 0.02562 * 8 7 6 11 11 C 1.47018 * 125.65048 * 0.02562 * 10 8 7 12 12 C 1.54321 * 107.27524 * 181.02410 * 11 10 8 13 13 C 1.55157 * 103.10033 * 22.10414 * 12 11 10 14 14 H 1.09002 * 111.00409 * 82.66048 * 13 12 11 15 15 C 1.52994 * 111.00585 * 206.50978 * 13 12 11 16 16 N 1.46497 * 109.47375 * 184.99935 * 15 13 12 17 17 C 1.36935 * 120.00372 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00147 * 0.02562 * 17 16 15 19 19 C 1.38813 * 120.00539 * 180.02562 * 17 16 15 20 20 N 1.31612 * 120.00502 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99684 * 0.02562 * 19 17 16 22 22 H 1.48505 * 109.47211 * 89.99776 * 21 19 17 23 23 H 1.48497 * 109.47467 * 210.00088 * 21 19 17 24 24 H 1.48505 * 109.47312 * 330.00187 * 21 19 17 25 25 C 1.47434 * 125.64822 * 179.97438 * 10 8 7 26 26 H 1.09003 * 109.46852 * 270.14498 * 1 2 3 27 27 H 1.09002 * 109.47680 * 30.14510 * 1 2 3 28 28 H 1.09000 * 109.47211 * 150.14944 * 1 2 3 29 29 H 1.08004 * 125.57177 * 359.96548 * 3 2 1 30 30 H 1.08001 * 125.79949 * 179.97438 * 6 4 3 31 31 H 1.09008 * 109.88015 * 61.60739 * 11 10 8 32 32 H 1.09002 * 109.88354 * 300.44656 * 11 10 8 33 33 H 1.09002 * 110.72109 * 140.55794 * 12 11 10 34 34 H 1.09003 * 110.72356 * 263.65620 * 12 11 10 35 35 H 1.08994 * 109.47586 * 305.00130 * 15 13 12 36 36 H 1.09000 * 109.47024 * 65.00200 * 15 13 12 37 37 H 0.97005 * 120.00103 * 0.02562 * 16 15 13 38 38 H 0.96999 * 120.00184 * 180.02562 * 20 19 17 39 39 H 1.09000 * 110.36877 * 274.74580 * 25 10 8 40 40 H 1.09001 * 110.36202 * 36.96356 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6553 -0.0058 5 1 4.3840 1.2413 -0.0102 6 6 3.6656 -0.6902 -0.0040 7 6 2.3864 -1.1740 0.0025 8 6 1.9750 -2.5880 0.0060 9 8 0.7937 -2.8776 0.0114 10 7 2.9074 -3.5611 0.0033 11 6 4.3628 -3.3533 -0.0026 12 6 5.0246 -4.7471 -0.0303 13 6 3.9070 -5.6558 -0.6070 14 1 3.8836 -5.6032 -1.6955 15 6 4.0761 -7.1008 -0.1336 16 7 3.0786 -7.9496 -0.7899 17 6 3.0365 -9.2912 -0.5192 18 1 3.7385 -9.7237 0.1784 19 6 2.0918 -10.0957 -1.1415 20 7 2.0510 -11.3851 -0.8809 21 14 0.8782 -9.3480 -2.3488 22 1 1.4521 -9.3901 -3.7178 23 1 -0.3893 -10.1211 -2.3194 24 1 0.6069 -7.9382 -1.9690 25 6 2.6368 -5.0104 0.0067 26 1 -0.3633 0.0026 1.0277 27 1 -0.3634 0.8887 -0.5161 28 1 -0.3634 -0.8913 -0.5115 29 1 1.9867 2.1059 -0.0005 30 1 4.5664 -1.2860 -0.0079 31 1 4.6644 -2.8175 0.8975 32 1 4.6529 -2.7875 -0.8880 33 1 5.8971 -4.7469 -0.6837 34 1 5.2983 -5.0642 0.9761 35 1 5.0760 -7.4519 -0.3882 36 1 3.9386 -7.1476 0.9467 37 1 2.4479 -7.5612 -1.4163 38 1 1.3911 -11.9472 -1.3161 39 1 2.4887 -5.3663 1.0263 40 1 1.7618 -5.2343 -0.6034 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662723981.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:49 Heat of formation + Delta-G solvation = 3.196249 kcal Electronic energy + Delta-G solvation = -21248.294627 eV Core-core repulsion = 18063.107636 eV Total energy + Delta-G solvation = -3185.186991 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.18095 -40.61832 -38.65178 -36.59178 -34.08844 -33.34183 -32.55129 -30.98415 -29.91622 -27.46951 -27.21606 -25.28464 -23.61689 -22.51783 -21.60863 -20.97834 -19.84590 -19.53372 -18.57501 -17.52782 -17.25588 -16.59129 -16.24687 -15.81324 -15.43534 -15.17611 -14.86614 -14.73022 -14.57508 -14.20836 -13.99158 -13.78832 -13.65151 -13.60666 -13.43748 -13.22143 -12.91586 -12.82427 -12.32040 -12.19924 -11.94290 -11.88256 -11.74429 -11.58460 -11.01691 -10.90560 -9.80754 -9.45314 -9.30534 -9.17867 -8.05071 -5.37311 0.77746 1.35168 1.38124 1.44288 1.49209 1.98788 2.45349 2.48866 2.53103 3.26109 3.38879 3.63851 3.75752 3.93753 3.99723 4.09771 4.25276 4.28759 4.41188 4.46377 4.55775 4.64743 4.67954 4.79310 4.86225 4.87649 4.90713 5.01075 5.07156 5.11329 5.21657 5.31450 5.34766 5.43329 5.74839 5.82420 5.96951 6.19797 6.61204 6.72689 7.06227 7.27244 7.83642 8.00026 9.16582 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027618 B = 0.003859 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.584637 B = 7254.126186 C = 8043.372145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.156 4.156 3 C -0.005 4.005 4 N -0.531 5.531 5 H 0.440 0.560 6 C 0.062 3.938 7 C -0.268 4.268 8 C 0.587 3.413 9 O -0.602 6.602 10 N -0.618 5.618 11 C 0.091 3.909 12 C -0.113 4.113 13 C -0.100 4.100 14 H 0.085 0.915 15 C 0.166 3.834 16 N -0.763 5.763 17 C -0.231 4.231 18 H 0.063 0.937 19 C -0.061 4.061 20 N -0.982 5.982 21 Si 0.948 3.052 22 H -0.273 1.273 23 H -0.295 1.295 24 H -0.264 1.264 25 C 0.115 3.885 26 H 0.056 0.944 27 H 0.082 0.918 28 H 0.040 0.960 29 H 0.203 0.797 30 H 0.214 0.786 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.115 0.885 34 H 0.089 0.911 35 H 0.044 0.956 36 H 0.027 0.973 37 H 0.363 0.637 38 H 0.258 0.742 39 H 0.058 0.942 40 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.162 32.167 1.359 33.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.162 4.162 3 C -0.133 4.133 4 N -0.127 5.127 5 H 0.281 0.719 6 C -0.076 4.076 7 C -0.278 4.278 8 C 0.380 3.620 9 O -0.484 6.484 10 N -0.351 5.351 11 C -0.030 4.030 12 C -0.151 4.151 13 C -0.120 4.120 14 H 0.103 0.897 15 C 0.040 3.960 16 N -0.408 5.408 17 C -0.362 4.362 18 H 0.081 0.919 19 C -0.252 4.252 20 N -0.633 5.633 21 Si 0.776 3.224 22 H -0.199 1.199 23 H -0.222 1.222 24 H -0.190 1.190 25 C -0.009 4.009 26 H 0.075 0.925 27 H 0.101 0.899 28 H 0.059 0.941 29 H 0.220 0.780 30 H 0.230 0.770 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.133 0.867 34 H 0.108 0.892 35 H 0.062 0.938 36 H 0.045 0.955 37 H 0.195 0.805 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 9.691 32.034 1.477 33.500 hybrid contribution -1.183 -0.509 -0.610 1.426 sum 8.508 31.525 0.866 32.664 Atomic orbital electron populations 1.20093 0.90324 1.01865 1.01394 1.20802 0.95872 0.91540 1.07975 1.21967 0.82450 0.99644 1.09259 1.41589 1.08702 1.06424 1.55964 0.71901 1.22980 0.98514 0.84654 1.01471 1.20285 0.95144 0.90956 1.21450 1.17755 0.84001 0.85096 0.75143 1.90718 1.19259 1.84460 1.54011 1.48431 1.08074 1.05455 1.73099 1.22661 0.77852 0.98964 1.03571 1.22702 0.97278 0.91617 1.03479 1.22507 0.94808 0.93997 1.00677 0.89715 1.20768 0.92095 0.87899 0.95272 1.42835 1.39630 1.05034 1.53324 1.19080 1.12899 0.84169 1.20066 0.91868 1.25415 1.01481 0.95742 1.02593 1.69857 1.39446 1.05291 1.48714 0.85516 0.78905 0.78134 0.79875 1.19899 1.22182 1.18956 1.22165 0.98401 0.80091 1.00207 0.92476 0.89934 0.94073 0.77993 0.76964 0.88347 0.88538 0.86677 0.89218 0.93793 0.95454 0.80475 0.93305 0.92395 0.94001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.89 9.97 71.24 0.71 -1.18 16 2 C -0.16 -3.50 6.35 -18.52 -0.12 -3.62 16 3 C 0.00 -0.06 11.82 83.12 0.98 0.92 16 4 N -0.53 -4.28 5.90 -194.55 -1.15 -5.42 16 5 H 0.44 -0.28 8.96 -92.71 -0.83 -1.11 16 6 C 0.06 0.81 10.42 83.91 0.87 1.69 16 7 C -0.27 -6.56 6.26 -19.04 -0.12 -6.68 16 8 C 0.59 19.39 7.84 86.62 0.68 20.07 16 9 O -0.60 -25.95 15.58 -4.12 -0.06 -26.02 16 10 N -0.62 -17.12 3.33 -815.37 -2.71 -19.83 16 11 C 0.09 1.38 5.00 86.73 0.43 1.82 16 12 C -0.11 -1.85 6.41 31.78 0.20 -1.65 16 13 C -0.10 -2.78 3.06 -9.33 -0.03 -2.81 16 14 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 15 C 0.17 6.01 5.72 86.38 0.49 6.51 16 16 N -0.76 -36.56 5.36 -343.48 -1.84 -38.40 16 17 C -0.23 -13.49 10.47 84.03 0.88 -12.61 16 18 H 0.06 3.96 8.06 -2.91 -0.02 3.94 16 19 C -0.06 -3.69 5.50 84.86 0.47 -3.23 16 20 N -0.98 -64.46 13.97 21.65 0.30 -64.16 16 21 Si 0.95 48.10 27.74 68.60 1.90 50.00 16 22 H -0.27 -13.29 7.11 99.48 0.71 -12.58 16 23 H -0.30 -15.13 7.11 99.48 0.71 -14.43 16 24 H -0.26 -12.77 6.52 99.48 0.65 -12.12 16 25 C 0.11 3.79 6.34 86.93 0.55 4.34 16 26 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.04 1.27 6.86 -2.39 -0.02 1.25 16 29 H 0.20 1.03 8.06 -2.91 -0.02 1.01 16 30 H 0.21 1.27 4.42 -2.91 -0.01 1.26 16 31 H 0.10 0.98 7.04 -2.38 -0.02 0.97 16 32 H 0.10 0.99 6.87 -2.39 -0.02 0.97 16 33 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.09 1.38 8.04 -2.39 -0.02 1.36 16 35 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.03 1.02 7.97 -2.39 -0.02 1.00 16 37 H 0.36 17.17 5.53 -92.70 -0.51 16.66 16 38 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 39 H 0.06 2.03 7.91 -2.39 -0.02 2.02 16 40 H 0.04 1.66 8.03 -2.39 -0.02 1.64 16 Total: -1.00 -87.32 324.53 2.12 -85.21 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -0.33 Total: 15.05 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: 6.01 Total: 3.57 kcal Atomic # 7 Polarization: -122.42 SS G_CDS: -5.40 Total: -127.81 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.06 Total: -26.02 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 1.90 Total: 50.00 kcal Total: -87.32 2.12 -85.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662723981.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.404 kcal (2) G-P(sol) polarization free energy of solvation -87.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds