Wall clock time and date at job start Mon Mar 30 2020 01:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38599 * 120.32918 * 2 1 4 4 N 1.31491 * 120.90364 * 180.02562 * 3 2 1 5 5 C 1.32744 * 121.64561 * 0.02562 * 4 3 2 6 6 C 1.48168 * 119.72552 * 180.02562 * 5 4 3 7 7 O 1.21514 * 119.99973 * 174.17815 * 6 5 4 8 8 N 1.34777 * 120.00177 * 354.18512 * 6 5 4 9 9 C 1.46496 * 120.00269 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47261 * 179.97438 * 9 8 6 11 11 N 1.46496 * 109.47261 * 179.97438 * 10 9 8 12 12 C 1.46494 * 120.00378 * 89.99860 * 11 10 9 13 13 C 1.36946 * 119.99781 * 269.99752 * 11 10 9 14 14 H 1.08000 * 120.00016 * 22.48011 * 13 11 10 15 15 C 1.38803 * 119.99880 * 202.47655 * 13 11 10 16 16 N 1.31621 * 120.00018 * 17.39345 * 15 13 11 17 17 Si 1.86805 * 119.99999 * 197.38947 * 15 13 11 18 18 H 1.48497 * 109.47011 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47018 * 120.00247 * 17 15 13 20 20 H 1.48501 * 109.47059 * 240.00107 * 17 15 13 21 21 C 1.39272 * 120.55134 * 0.02562 * 5 4 3 22 22 C 1.50705 * 120.46663 * 180.02562 * 21 5 4 23 23 C 1.38591 * 120.32319 * 180.30746 * 2 1 3 24 24 H 1.08997 * 109.47467 * 89.99381 * 1 2 3 25 25 H 1.08998 * 109.47484 * 209.99899 * 1 2 3 26 26 H 1.09002 * 109.46898 * 329.99598 * 1 2 3 27 27 H 1.08002 * 119.54767 * 0.04365 * 3 2 1 28 28 H 0.97005 * 119.99795 * 359.97438 * 8 6 5 29 29 H 1.08998 * 109.46573 * 299.99587 * 9 8 6 30 30 H 1.08996 * 109.47227 * 59.99284 * 9 8 6 31 31 H 1.08997 * 109.47020 * 299.99983 * 10 9 8 32 32 H 1.09002 * 109.47087 * 59.99320 * 10 9 8 33 33 H 1.08999 * 109.47047 * 95.13524 * 12 11 10 34 34 H 1.09000 * 109.47224 * 215.13667 * 12 11 10 35 35 H 1.09005 * 109.46976 * 335.13485 * 12 11 10 36 36 H 0.97008 * 119.99814 * 179.97438 * 16 15 13 37 37 H 1.08999 * 109.46785 * 82.90338 * 22 21 5 38 38 H 1.09002 * 109.47016 * 322.89943 * 22 21 5 39 39 H 1.09000 * 109.46615 * 202.90279 * 22 21 5 40 40 H 1.07998 * 120.75200 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2068 1.1963 0.0000 4 7 3.5217 1.2095 -0.0005 5 6 4.2294 0.0865 -0.0015 6 6 5.7097 0.1510 -0.0015 7 8 6.3622 -0.8686 0.1043 8 7 6.3324 1.3405 -0.1187 9 6 7.7960 1.4043 -0.1181 10 6 8.2431 2.8603 -0.2637 11 7 9.7066 2.9242 -0.2624 12 6 10.4451 2.8278 -1.5239 13 6 10.3845 3.0740 0.9180 14 1 9.9172 2.7887 1.8490 15 6 11.6720 3.5925 0.9180 16 7 12.1167 4.2501 -0.1318 17 14 12.7737 3.3570 2.4081 18 1 12.0430 2.5884 3.4475 19 1 13.9943 2.6116 2.0084 20 1 13.1599 4.6835 2.9527 21 6 3.5922 -1.1519 -0.0027 22 6 4.3976 -2.4257 -0.0032 23 6 2.2066 -1.1963 -0.0064 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6648 2.1305 0.0007 28 1 5.8115 2.1544 -0.2034 29 1 8.1769 0.9989 0.8193 30 1 8.1855 0.8199 -0.9516 31 1 7.8621 3.2653 -1.2012 32 1 7.8534 3.4450 0.5696 33 1 10.6633 3.8294 -1.8946 34 1 11.3788 2.2903 -1.3583 35 1 9.8427 2.2921 -2.2576 36 1 13.0164 4.6127 -0.1317 37 1 4.6986 -2.6656 1.0165 38 1 5.2848 -2.2943 -0.6227 39 1 3.7917 -3.2384 -0.4040 40 1 1.6843 -2.1415 -0.0111 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663233184.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:07 Heat of formation + Delta-G solvation = 16.072440 kcal Electronic energy + Delta-G solvation = -20778.076102 eV Core-core repulsion = 17593.447465 eV Total energy + Delta-G solvation = -3184.628637 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.88459 -38.88549 -36.08976 -34.50128 -33.86005 -33.40432 -31.30221 -28.84806 -27.68307 -27.20889 -25.81392 -24.07757 -23.21229 -21.60637 -20.65160 -20.40225 -17.98247 -17.07013 -16.65381 -15.56171 -15.41315 -15.09997 -14.72011 -14.55499 -14.46140 -13.75605 -13.50062 -13.41339 -13.26718 -13.13054 -12.85301 -12.64820 -12.48496 -12.30866 -12.25743 -11.97002 -11.17287 -10.88194 -10.82472 -10.56586 -10.32220 -10.06390 -9.91737 -9.87890 -9.83557 -9.41605 -9.09568 -8.59901 -8.52758 -6.77673 -5.72969 -3.18737 0.49488 0.99091 2.78765 3.31962 3.40490 3.47991 3.51113 3.73185 4.07783 4.40186 4.48027 4.53746 4.62562 4.76528 4.92461 5.15769 5.16644 5.35909 5.40570 5.50462 5.57766 5.66341 5.69499 5.84086 5.86903 5.90884 5.99047 6.18020 6.29370 6.44622 6.65735 6.68998 6.77972 6.92766 7.34667 7.50633 7.70475 7.83031 7.86130 8.37756 8.43528 9.22625 9.86130 10.34359 11.32192 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032465 B = 0.003144 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.248595 B = 8902.378173 C = 9119.911075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.116 4.116 3 C 0.089 3.911 4 N -0.450 5.450 5 C 0.070 3.930 6 C 0.563 3.437 7 O -0.533 6.533 8 N -0.702 5.702 9 C 0.093 3.907 10 C 0.143 3.857 11 N -0.596 5.596 12 C 0.159 3.841 13 C -0.259 4.259 14 H 0.070 0.930 15 C 0.003 3.997 16 N -0.903 5.903 17 Si 0.903 3.097 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.290 1.290 21 C -0.069 4.069 22 C -0.117 4.117 23 C -0.091 4.091 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.161 0.839 28 H 0.407 0.593 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.042 0.958 32 H 0.054 0.946 33 H 0.033 0.967 34 H 0.040 0.960 35 H 0.001 0.999 36 H 0.252 0.748 37 H 0.079 0.921 38 H 0.101 0.899 39 H 0.057 0.943 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.546 -9.039 -1.678 25.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.119 4.119 3 C -0.072 4.072 4 N -0.160 5.160 5 C -0.068 4.068 6 C 0.347 3.653 7 O -0.411 6.411 8 N -0.352 5.352 9 C -0.032 4.032 10 C 0.015 3.985 11 N -0.319 5.319 12 C 0.014 3.986 13 C -0.389 4.389 14 H 0.087 0.913 15 C -0.195 4.195 16 N -0.548 5.548 17 Si 0.733 3.267 18 H -0.202 1.202 19 H -0.215 1.215 20 H -0.218 1.218 21 C -0.072 4.072 22 C -0.174 4.174 23 C -0.117 4.117 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.178 0.822 28 H 0.242 0.758 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.020 0.980 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.119 0.881 39 H 0.076 0.924 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -22.340 -8.854 -1.644 24.086 hybrid contribution -0.105 -0.429 0.744 0.865 sum -22.445 -9.283 -0.899 24.306 Atomic orbital electron populations 1.20766 0.89901 1.03393 1.02847 1.21152 0.97764 0.94150 0.98793 1.22668 0.89345 0.97678 0.97500 1.67545 1.08671 1.30215 1.09552 1.21143 0.94578 0.89098 1.01955 1.17857 0.85520 0.84249 0.77652 1.90730 1.66054 1.33816 1.50461 1.45965 1.08848 1.08670 1.71702 1.22482 0.76478 1.02005 1.02255 1.20836 0.86401 0.91690 0.99600 1.43801 0.98834 1.84582 1.04684 1.20829 0.93912 0.98871 0.84986 1.19225 0.97372 1.36197 0.86075 0.91251 1.24985 0.99168 0.97896 0.97491 1.70109 1.17408 1.37319 1.29927 0.86213 0.80779 0.77412 0.82322 1.20218 1.21541 1.21750 1.20963 0.94238 0.96473 0.95551 1.21061 1.00356 0.91768 1.04168 1.21424 0.92971 0.98491 0.98792 0.90552 0.91139 0.90846 0.82215 0.75820 0.91315 0.92036 0.94014 0.92809 0.94830 0.94162 0.97999 0.93769 0.90285 0.88087 0.92387 0.84332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.54 10.03 36.00 0.36 -0.18 16 2 C -0.12 -0.97 5.91 -104.36 -0.62 -1.58 16 3 C 0.09 0.86 10.86 -17.56 -0.19 0.67 16 4 N -0.45 -5.79 9.56 -9.80 -0.09 -5.88 16 5 C 0.07 0.99 6.75 -83.01 -0.56 0.43 16 6 C 0.56 9.40 7.75 -12.18 -0.09 9.30 16 7 O -0.53 -10.05 13.32 5.35 0.07 -9.98 16 8 N -0.70 -11.50 5.54 -61.15 -0.34 -11.84 16 9 C 0.09 1.79 6.00 -4.04 -0.02 1.76 16 10 C 0.14 2.95 5.76 -4.04 -0.02 2.93 16 11 N -0.60 -15.23 2.92 -181.13 -0.53 -15.76 16 12 C 0.16 3.96 9.00 59.84 0.54 4.50 16 13 C -0.26 -7.25 9.63 -15.06 -0.15 -7.39 16 14 H 0.07 1.91 7.89 -52.49 -0.41 1.49 16 15 C 0.00 0.09 5.01 -17.43 -0.09 0.01 16 16 N -0.90 -26.66 10.94 55.49 0.61 -26.06 16 17 Si 0.90 22.19 29.59 -169.99 -5.03 17.17 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 C -0.07 -0.83 5.93 -104.09 -0.62 -1.45 16 22 C -0.12 -1.33 8.73 36.01 0.31 -1.02 16 23 C -0.09 -0.83 9.51 -39.31 -0.37 -1.21 16 24 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.07 0.28 8.10 -51.93 -0.42 -0.14 16 26 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 27 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 28 H 0.41 5.95 7.82 -40.82 -0.32 5.63 16 29 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.04 0.79 8.07 -51.93 -0.42 0.37 16 32 H 0.05 1.10 8.04 -51.93 -0.42 0.68 16 33 H 0.03 0.90 7.34 -51.93 -0.38 0.52 16 34 H 0.04 1.07 7.42 -51.93 -0.39 0.68 16 35 H 0.00 0.03 8.03 -51.93 -0.42 -0.39 16 36 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.10 1.39 5.88 -51.93 -0.31 1.09 16 39 H 0.06 0.50 8.05 -51.93 -0.42 0.08 16 40 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 LS Contribution 335.77 15.07 5.06 5.06 Total: -1.00 -32.42 335.77 -7.76 -40.18 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -5.99 Total: 0.33 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: -1.52 Total: 6.78 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: -0.35 Total: -59.54 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.07 Total: -9.98 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.17 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.42 -7.76 -40.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663233184.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.256 kcal (2) G-P(sol) polarization free energy of solvation -32.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds