Wall clock time and date at job start Mon Mar 30 2020 01:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38622 * 120.75436 * 2 1 4 4 C 1.38562 * 119.35121 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.54664 * 180.02562 * 4 3 2 6 6 N 1.31520 * 120.90132 * 359.97438 * 4 3 2 7 7 C 1.32710 * 121.64683 * 359.77078 * 6 4 3 8 8 C 1.48170 * 119.72947 * 180.24339 * 7 6 4 9 9 O 1.21506 * 120.00398 * 173.03278 * 8 7 6 10 10 N 1.34777 * 119.99510 * 353.04078 * 8 7 6 11 11 C 1.46505 * 120.00370 * 2.03995 * 10 8 7 12 12 C 1.46502 * 120.00050 * 182.04595 * 10 8 7 13 13 C 1.53004 * 109.47193 * 89.99279 * 12 10 8 14 14 N 1.46500 * 109.46818 * 180.02562 * 13 12 10 15 15 C 1.36942 * 119.99488 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00465 * 0.02562 * 15 14 13 17 17 C 1.38813 * 119.99484 * 179.97438 * 15 14 13 18 18 N 1.31617 * 120.00579 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99542 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47299 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47254 * 120.00538 * 19 17 15 22 22 H 1.48501 * 109.46934 * 239.99977 * 19 17 15 23 23 C 1.38593 * 120.75539 * 180.02562 * 2 1 3 24 24 H 1.08998 * 109.47381 * 269.97977 * 1 2 3 25 25 H 1.08996 * 109.46984 * 29.98080 * 1 2 3 26 26 H 1.09004 * 109.46774 * 149.97933 * 1 2 3 27 27 H 1.08001 * 120.32627 * 359.97438 * 3 2 1 28 28 H 1.08998 * 109.47297 * 89.99995 * 5 4 3 29 29 H 1.09005 * 109.46924 * 210.00087 * 5 4 3 30 30 H 1.09003 * 109.47340 * 329.99730 * 5 4 3 31 31 H 1.09002 * 109.46524 * 83.77420 * 11 10 8 32 32 H 1.09001 * 109.47315 * 203.77416 * 11 10 8 33 33 H 1.09001 * 109.46975 * 323.77754 * 11 10 8 34 34 H 1.09002 * 109.47257 * 209.99685 * 12 10 8 35 35 H 1.09000 * 109.46660 * 329.99890 * 12 10 8 36 36 H 1.09002 * 109.47350 * 300.00348 * 13 12 10 37 37 H 1.09000 * 109.46814 * 60.00151 * 13 12 10 38 38 H 0.96996 * 120.00295 * 0.02562 * 14 13 12 39 39 H 0.96999 * 120.00378 * 179.97438 * 18 17 15 40 40 H 1.07996 * 120.46744 * 359.96458 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1913 0.0000 4 6 3.6011 1.1573 -0.0005 5 6 4.3761 2.4498 0.0000 6 7 4.2487 0.0126 -0.0005 7 6 3.6082 -1.1497 0.0045 8 6 4.3806 -2.4142 0.0097 9 8 3.8060 -3.4766 0.1420 10 7 5.7206 -2.3858 -0.1320 11 6 6.4182 -1.1026 -0.2464 12 6 6.4796 -3.6383 -0.1719 13 6 6.5930 -4.1201 -1.6196 14 7 7.3515 -5.3728 -1.6593 15 6 7.5816 -5.9962 -2.8567 16 1 7.2044 -5.5641 -3.7718 17 6 8.3008 -7.1829 -2.8944 18 7 8.7611 -7.7092 -1.7793 19 14 8.6154 -8.0328 -4.5278 20 1 7.9979 -7.2434 -5.6236 21 1 10.0787 -8.1374 -4.7577 22 1 8.0202 -9.3930 -4.5007 23 6 2.2158 -1.1910 -0.0005 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6936 2.1366 -0.0004 28 1 4.5634 2.7607 1.0278 29 1 5.3261 2.3040 -0.5143 30 1 3.7996 3.2195 -0.5131 31 1 6.6006 -0.6983 0.7493 32 1 7.3691 -1.2504 -0.7584 33 1 5.8039 -0.4046 -0.8151 34 1 7.4771 -3.4717 0.2348 35 1 5.9660 -4.3934 0.4231 36 1 5.5955 -4.2867 -2.0263 37 1 7.1065 -3.3649 -2.2147 38 1 7.6900 -5.7611 -0.8374 39 1 9.2633 -8.5387 -1.8056 40 1 1.6959 -2.1376 -0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664036703.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:11 Heat of formation + Delta-G solvation = 23.721346 kcal Electronic energy + Delta-G solvation = -20943.780371 eV Core-core repulsion = 17759.483416 eV Total energy + Delta-G solvation = -3184.296956 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.97783 -39.10189 -35.94361 -34.70605 -34.08061 -32.99042 -31.23906 -28.40346 -28.31255 -27.66331 -26.43349 -24.71469 -23.08384 -21.49120 -21.39970 -19.46785 -17.46665 -17.02676 -16.62002 -16.27288 -15.70278 -15.51041 -14.75314 -14.36810 -14.31173 -13.70286 -13.68441 -13.36525 -13.28571 -13.23380 -12.95204 -12.74259 -12.70742 -12.51151 -12.41552 -12.11163 -11.78030 -11.20331 -10.94682 -10.84741 -10.63418 -10.15145 -10.03308 -9.78826 -9.71004 -9.24222 -9.21507 -8.82968 -8.35642 -6.88026 -5.71481 -3.00496 0.49438 0.92457 2.73536 3.07439 3.47530 3.52828 3.55491 3.67093 3.86231 4.25522 4.37672 4.66108 4.69483 4.80282 4.96744 5.05269 5.17136 5.24281 5.27893 5.39173 5.47441 5.51116 5.55679 5.66447 5.71531 5.74391 5.80585 5.96451 5.97125 6.09962 6.15447 6.21486 6.43442 6.67383 6.80806 6.98168 7.47836 7.62405 7.75607 8.28297 8.47110 9.57995 10.14456 10.49952 11.51599 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028862 B = 0.003294 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.916974 B = 8497.251299 C = 8873.183799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.046 4.046 3 C -0.157 4.157 4 C 0.121 3.879 5 C -0.103 4.103 6 N -0.454 5.454 7 C 0.096 3.904 8 C 0.562 3.438 9 O -0.529 6.529 10 N -0.589 5.589 11 C 0.077 3.923 12 C 0.105 3.895 13 C 0.143 3.857 14 N -0.730 5.730 15 C -0.236 4.236 16 H 0.071 0.929 17 C -0.015 4.015 18 N -0.933 5.933 19 Si 0.908 3.092 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C -0.120 4.120 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.137 0.863 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.022 0.978 37 H 0.019 0.981 38 H 0.384 0.616 39 H 0.255 0.745 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.779 23.855 6.081 28.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.054 4.054 3 C -0.177 4.177 4 C -0.018 4.018 5 C -0.160 4.160 6 N -0.168 5.168 7 C -0.041 4.041 8 C 0.348 3.652 9 O -0.405 6.405 10 N -0.320 5.320 11 C -0.066 4.066 12 C -0.017 4.017 13 C 0.015 3.985 14 N -0.375 5.375 15 C -0.367 4.367 16 H 0.089 0.911 17 C -0.211 4.211 18 N -0.582 5.582 19 Si 0.740 3.260 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.218 1.218 23 C -0.141 4.141 24 H 0.097 0.903 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.154 0.846 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.122 0.878 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.040 0.960 37 H 0.037 0.963 38 H 0.218 0.782 39 H 0.064 0.936 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -13.148 23.219 5.969 27.342 hybrid contribution -0.487 -0.621 -0.614 1.001 sum -13.635 22.597 5.355 26.930 Atomic orbital electron populations 1.20840 0.89689 1.03634 1.03123 1.20348 0.97107 0.92517 0.95397 1.22029 0.94817 0.98762 1.02056 1.21465 0.91279 0.94203 0.94843 1.20726 1.00430 0.91580 1.03284 1.67980 1.39189 0.97598 1.12064 1.21226 0.91717 0.92110 0.99082 1.17911 0.82227 0.87226 0.77856 1.90811 1.69415 1.30288 1.49975 1.47682 1.05881 1.08444 1.69991 1.22374 0.97443 0.84612 1.02171 1.21800 0.95706 0.84860 0.99377 1.20908 0.95383 0.89332 0.92911 1.42221 1.64515 1.23316 1.07465 1.19264 1.27943 1.03195 0.86342 0.91142 1.24750 1.01083 0.98166 0.97077 1.69672 1.42028 1.21383 1.25156 0.86087 0.77469 0.79416 0.83067 1.20560 1.21864 1.21823 1.22010 0.93788 0.99623 0.98686 0.90286 0.90864 0.90609 0.84556 0.90220 0.90119 0.90667 0.92845 0.91972 0.87804 0.90182 0.89583 0.95982 0.96285 0.78237 0.93555 0.83448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.70 10.06 36.01 0.36 -0.34 16 2 C -0.05 -0.42 5.91 -104.35 -0.62 -1.04 16 3 C -0.16 -1.27 9.45 -39.32 -0.37 -1.64 16 4 C 0.12 1.13 6.78 -82.61 -0.56 0.57 16 5 C -0.10 -0.61 10.17 36.01 0.37 -0.25 16 6 N -0.45 -5.50 5.94 -6.06 -0.04 -5.54 16 7 C 0.10 1.36 6.62 -83.01 -0.55 0.81 16 8 C 0.56 9.76 7.66 -12.18 -0.09 9.67 16 9 O -0.53 -10.88 15.91 5.36 0.09 -10.79 16 10 N -0.59 -9.72 2.87 -182.56 -0.52 -10.25 16 11 C 0.08 1.00 9.31 59.85 0.56 1.55 16 12 C 0.10 1.97 5.51 -4.04 -0.02 1.94 16 13 C 0.14 3.21 6.58 -4.04 -0.03 3.19 16 14 N -0.73 -19.80 5.60 -59.91 -0.34 -20.13 16 15 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 16 H 0.07 2.03 7.83 -52.49 -0.41 1.62 16 17 C -0.01 -0.45 5.50 -17.43 -0.10 -0.54 16 18 N -0.93 -29.15 13.06 55.49 0.72 -28.43 16 19 Si 0.91 23.16 29.55 -169.99 -5.02 18.13 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 21 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 22 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 23 C -0.12 -1.46 9.34 -39.05 -0.36 -1.83 16 24 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.33 8.10 -51.93 -0.42 -0.09 16 26 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 27 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.77 8.02 -51.93 -0.42 0.36 16 33 H 0.10 1.30 5.26 -52.12 -0.27 1.03 16 34 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 35 H 0.09 1.75 7.39 -51.93 -0.38 1.36 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.38 10.75 7.67 -40.82 -0.31 10.43 16 39 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 40 H 0.15 1.80 7.66 -52.49 -0.40 1.40 16 LS Contribution 338.55 15.07 5.10 5.10 Total: -1.00 -35.03 338.55 -7.55 -42.58 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -5.97 Total: 4.36 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -1.57 Total: 4.97 kcal Atomic # 7 Polarization: -64.18 SS G_CDS: -0.17 Total: -64.35 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.09 Total: -10.79 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -5.02 Total: 18.13 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.03 -7.55 -42.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664036703.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.297 kcal (2) G-P(sol) polarization free energy of solvation -35.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds