Wall clock time and date at job start Mon Mar 30 2020 01:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38622 * 120.75436 * 2 1 4 4 C 1.38562 * 119.35121 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.54664 * 180.02562 * 4 3 2 6 6 N 1.31520 * 120.90132 * 359.97438 * 4 3 2 7 7 C 1.32710 * 121.64683 * 359.77078 * 6 4 3 8 8 C 1.48170 * 119.72947 * 180.24339 * 7 6 4 9 9 O 1.21506 * 120.00398 * 173.03278 * 8 7 6 10 10 N 1.34777 * 119.99510 * 353.04078 * 8 7 6 11 11 C 1.46505 * 120.00370 * 2.03995 * 10 8 7 12 12 C 1.46502 * 120.00050 * 182.04595 * 10 8 7 13 13 C 1.53004 * 109.47193 * 89.99279 * 12 10 8 14 14 N 1.46500 * 109.46818 * 180.02562 * 13 12 10 15 15 C 1.36942 * 119.99488 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00465 * 0.02562 * 15 14 13 17 17 C 1.38813 * 119.99484 * 179.97438 * 15 14 13 18 18 N 1.31617 * 120.00579 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99542 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47299 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47254 * 120.00538 * 19 17 15 22 22 H 1.48501 * 109.46934 * 239.99977 * 19 17 15 23 23 C 1.38593 * 120.75539 * 180.02562 * 2 1 3 24 24 H 1.08998 * 109.47381 * 269.97977 * 1 2 3 25 25 H 1.08996 * 109.46984 * 29.98080 * 1 2 3 26 26 H 1.09004 * 109.46774 * 149.97933 * 1 2 3 27 27 H 1.08001 * 120.32627 * 359.97438 * 3 2 1 28 28 H 1.08998 * 109.47297 * 89.99995 * 5 4 3 29 29 H 1.09005 * 109.46924 * 210.00087 * 5 4 3 30 30 H 1.09003 * 109.47340 * 329.99730 * 5 4 3 31 31 H 1.09002 * 109.46524 * 83.77420 * 11 10 8 32 32 H 1.09001 * 109.47315 * 203.77416 * 11 10 8 33 33 H 1.09001 * 109.46975 * 323.77754 * 11 10 8 34 34 H 1.09002 * 109.47257 * 209.99685 * 12 10 8 35 35 H 1.09000 * 109.46660 * 329.99890 * 12 10 8 36 36 H 1.09002 * 109.47350 * 300.00348 * 13 12 10 37 37 H 1.09000 * 109.46814 * 60.00151 * 13 12 10 38 38 H 0.96996 * 120.00295 * 0.02562 * 14 13 12 39 39 H 0.96999 * 120.00378 * 179.97438 * 18 17 15 40 40 H 1.07996 * 120.46744 * 359.96458 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1913 0.0000 4 6 3.6011 1.1573 -0.0005 5 6 4.3761 2.4498 0.0000 6 7 4.2487 0.0126 -0.0005 7 6 3.6082 -1.1497 0.0045 8 6 4.3806 -2.4142 0.0097 9 8 3.8060 -3.4766 0.1420 10 7 5.7206 -2.3858 -0.1320 11 6 6.4182 -1.1026 -0.2464 12 6 6.4796 -3.6383 -0.1719 13 6 6.5930 -4.1201 -1.6196 14 7 7.3515 -5.3728 -1.6593 15 6 7.5816 -5.9962 -2.8567 16 1 7.2044 -5.5641 -3.7718 17 6 8.3008 -7.1829 -2.8944 18 7 8.7611 -7.7092 -1.7793 19 14 8.6154 -8.0328 -4.5278 20 1 7.9979 -7.2434 -5.6236 21 1 10.0787 -8.1374 -4.7577 22 1 8.0202 -9.3930 -4.5007 23 6 2.2158 -1.1910 -0.0005 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6936 2.1366 -0.0004 28 1 4.5634 2.7607 1.0278 29 1 5.3261 2.3040 -0.5143 30 1 3.7996 3.2195 -0.5131 31 1 6.6006 -0.6983 0.7493 32 1 7.3691 -1.2504 -0.7584 33 1 5.8039 -0.4046 -0.8151 34 1 7.4771 -3.4717 0.2348 35 1 5.9660 -4.3934 0.4231 36 1 5.5955 -4.2867 -2.0263 37 1 7.1065 -3.3649 -2.2147 38 1 7.6900 -5.7611 -0.8374 39 1 9.2633 -8.5387 -1.8056 40 1 1.6959 -2.1376 -0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664036703.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:10 Heat of formation + Delta-G solvation = 0.479159 kcal Electronic energy + Delta-G solvation = -20944.788228 eV Core-core repulsion = 17759.483416 eV Total energy + Delta-G solvation = -3185.304813 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.93738 -40.29515 -37.51894 -36.24736 -35.13436 -33.94808 -33.18125 -30.02273 -29.06678 -28.30354 -27.61186 -26.33141 -24.69036 -23.10911 -22.18536 -20.72528 -19.27516 -18.43298 -17.68830 -17.20956 -16.96575 -16.73891 -16.45738 -15.62192 -15.57202 -15.13799 -15.03178 -14.83514 -14.36738 -14.20093 -14.02936 -13.88485 -13.49764 -13.15019 -13.10521 -13.05548 -12.98577 -12.88391 -12.73365 -12.50956 -12.36888 -12.11326 -11.89920 -11.43290 -11.02290 -10.52028 -10.21151 -10.06510 -9.67958 -9.10607 -8.00189 -5.31834 -0.40398 0.17024 1.44749 1.47142 1.57166 1.60529 1.81877 2.53463 2.73283 2.94645 3.32807 3.51991 3.66649 3.96835 4.00989 4.02784 4.02995 4.18045 4.32103 4.43082 4.49644 4.50919 4.65644 4.72760 4.77698 4.82331 4.89052 4.93431 4.99447 5.03052 5.11284 5.21732 5.28113 5.29346 5.40930 5.50718 5.71851 6.20831 6.24360 6.69838 7.00548 7.27103 7.96914 8.24060 9.23425 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028862 B = 0.003294 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.916974 B = 8497.251299 C = 8873.183799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.045 4.045 3 C -0.141 4.141 4 C 0.114 3.886 5 C -0.100 4.100 6 N -0.467 5.467 7 C 0.069 3.931 8 C 0.554 3.446 9 O -0.577 6.577 10 N -0.590 5.590 11 C 0.079 3.921 12 C 0.119 3.881 13 C 0.151 3.849 14 N -0.742 5.742 15 C -0.253 4.253 16 H 0.073 0.927 17 C -0.073 4.073 18 N -0.967 5.967 19 Si 0.980 3.020 20 H -0.267 1.267 21 H -0.286 1.286 22 H -0.291 1.291 23 C -0.136 4.136 24 H 0.091 0.909 25 H 0.097 0.903 26 H 0.071 0.929 27 H 0.178 0.822 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.064 0.936 36 H -0.001 1.001 37 H 0.030 0.970 38 H 0.376 0.624 39 H 0.254 0.746 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.565 27.006 5.433 31.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.053 4.053 3 C -0.160 4.160 4 C -0.026 4.026 5 C -0.157 4.157 6 N -0.181 5.181 7 C -0.068 4.068 8 C 0.342 3.658 9 O -0.456 6.456 10 N -0.320 5.320 11 C -0.063 4.063 12 C -0.005 4.005 13 C 0.023 3.977 14 N -0.386 5.386 15 C -0.385 4.385 16 H 0.091 0.909 17 C -0.265 4.265 18 N -0.618 5.618 19 Si 0.808 3.192 20 H -0.192 1.192 21 H -0.213 1.213 22 H -0.218 1.218 23 C -0.157 4.157 24 H 0.109 0.891 25 H 0.116 0.884 26 H 0.090 0.910 27 H 0.196 0.804 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.120 0.880 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.130 0.870 34 H 0.117 0.883 35 H 0.083 0.917 36 H 0.017 0.983 37 H 0.048 0.952 38 H 0.209 0.791 39 H 0.063 0.937 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -13.936 26.425 5.315 30.344 hybrid contribution -0.324 -1.449 -0.383 1.533 sum -14.259 24.976 4.932 29.180 Atomic orbital electron populations 1.20926 0.87302 1.04687 1.04183 1.20715 0.98755 0.91665 0.94129 1.22510 0.94425 0.99919 0.99178 1.22157 0.92504 0.94325 0.93577 1.20847 1.00268 0.90221 1.04393 1.67855 1.39701 0.97729 1.12801 1.20751 0.91962 0.91469 1.02572 1.18555 0.82415 0.88155 0.76680 1.90763 1.70336 1.32360 1.52165 1.47784 1.05917 1.08678 1.69632 1.22546 0.97414 0.82994 1.03299 1.21471 0.96709 0.85741 0.96538 1.20910 0.93412 0.87896 0.95449 1.42384 1.64898 1.24677 1.06602 1.19630 1.27887 1.03743 0.87201 0.90929 1.25659 1.01073 0.98888 1.00891 1.69827 1.42769 1.21752 1.27407 0.84982 0.77350 0.77920 0.78908 1.19153 1.21274 1.21784 1.22057 0.93322 1.00613 0.99751 0.89075 0.88396 0.91012 0.80420 0.88996 0.90452 0.87974 0.91411 0.91329 0.87018 0.88269 0.91749 0.98281 0.95249 0.79139 0.93683 0.84875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.06 71.24 0.72 -0.36 16 2 C -0.04 -0.73 5.91 -19.69 -0.12 -0.85 16 3 C -0.14 -1.77 9.45 22.44 0.21 -1.56 16 4 C 0.11 1.82 6.78 42.68 0.29 2.11 16 5 C -0.10 -0.82 10.17 71.24 0.72 -0.09 16 6 N -0.47 -10.82 5.94 -173.08 -1.03 -11.85 16 7 C 0.07 1.98 6.62 41.91 0.28 2.26 16 8 C 0.55 20.27 7.66 86.88 0.67 20.94 16 9 O -0.58 -25.56 15.91 -3.74 -0.06 -25.62 16 10 N -0.59 -20.02 2.87 -849.80 -2.44 -22.46 16 11 C 0.08 2.00 9.31 127.77 1.19 3.18 16 12 C 0.12 4.61 5.51 86.38 0.48 5.09 16 13 C 0.15 7.00 6.58 86.38 0.57 7.57 16 14 N -0.74 -41.35 5.60 -343.44 -1.92 -43.27 16 15 C -0.25 -15.16 9.99 84.03 0.84 -14.32 16 16 H 0.07 4.22 7.83 -2.91 -0.02 4.20 16 17 C -0.07 -4.36 5.50 84.86 0.47 -3.90 16 18 N -0.97 -61.32 13.06 21.65 0.28 -61.04 16 19 Si 0.98 47.84 29.55 68.60 2.03 49.87 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 22 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 23 C -0.14 -3.38 9.34 22.61 0.21 -3.17 16 24 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.10 0.47 8.10 -2.39 -0.02 0.45 16 26 H 0.07 0.75 8.10 -2.38 -0.02 0.73 16 27 H 0.18 0.77 8.06 -2.91 -0.02 0.74 16 28 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.10 0.32 8.08 -2.39 -0.02 0.30 16 31 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.07 1.63 8.02 -2.39 -0.02 1.61 16 33 H 0.11 2.71 5.26 -2.76 -0.01 2.69 16 34 H 0.10 3.44 8.07 -2.39 -0.02 3.42 16 35 H 0.06 2.78 7.39 -2.39 -0.02 2.76 16 36 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 37 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.38 21.79 7.67 -92.71 -0.71 21.08 16 39 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 40 H 0.13 3.55 7.66 -2.91 -0.02 3.53 16 Total: -1.00 -78.31 338.55 3.70 -74.61 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: 0.33 Total: 22.87 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: 6.52 Total: 16.89 kcal Atomic # 7 Polarization: -133.51 SS G_CDS: -5.11 Total: -138.62 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.06 Total: -25.62 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 2.03 Total: 49.87 kcal Total: -78.31 3.70 -74.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664036703.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.093 kcal (2) G-P(sol) polarization free energy of solvation -78.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds