Wall clock time and date at job start Mon Mar 30 2020 01:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34660 * 125.79883 * 2 1 4 4 H 0.97000 * 124.84801 * 359.97438 * 3 2 1 5 5 C 1.36450 * 110.29819 * 179.97438 * 3 2 1 6 6 C 1.34488 * 108.85699 * 359.97438 * 5 3 2 7 7 C 1.36771 * 125.80512 * 180.29329 * 2 1 3 8 8 C 1.47258 * 126.94074 * 0.02562 * 7 2 1 9 9 O 1.21626 * 120.00356 * 6.56714 * 8 7 2 10 10 N 1.34782 * 120.00005 * 186.56065 * 8 7 2 11 11 C 1.47419 * 125.64350 * 6.23455 * 10 8 7 12 12 C 1.55133 * 104.72042 * 155.81644 * 11 10 8 13 13 C 1.55158 * 101.48719 * 37.29182 * 12 11 10 14 14 C 1.47021 * 125.64780 * 186.53795 * 10 8 7 15 15 H 1.09002 * 109.88616 * 300.44574 * 14 10 8 16 16 C 1.53001 * 109.87922 * 61.61199 * 14 10 8 17 17 N 1.46506 * 109.47000 * 283.67998 * 16 14 10 18 18 C 1.36942 * 119.99809 * 172.24424 * 17 16 14 19 19 H 1.08004 * 119.99896 * 0.02562 * 18 17 16 20 20 C 1.38810 * 119.99762 * 180.02562 * 18 17 16 21 21 N 1.31621 * 119.99892 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99902 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47355 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47307 * 120.00186 * 22 20 18 25 25 H 1.48495 * 109.47217 * 240.00081 * 22 20 18 26 26 H 1.08999 * 109.46898 * 89.98352 * 1 2 3 27 27 H 1.08996 * 109.47237 * 209.97794 * 1 2 3 28 28 H 1.08999 * 109.47564 * 329.98176 * 1 2 3 29 29 H 1.08002 * 125.57003 * 179.97438 * 5 3 2 30 30 H 1.07991 * 126.83559 * 179.97438 * 6 5 3 31 31 H 1.09001 * 110.36877 * 274.74373 * 11 10 8 32 32 H 1.09003 * 110.37227 * 37.07303 * 11 10 8 33 33 H 1.09008 * 111.19032 * 279.19174 * 12 11 10 34 34 H 1.09000 * 110.94353 * 155.28776 * 12 11 10 35 35 H 1.08992 * 110.72339 * 205.97131 * 13 12 11 36 36 H 1.09002 * 110.86868 * 82.76742 * 13 12 11 37 37 H 1.08991 * 109.47586 * 43.68429 * 16 14 10 38 38 H 1.09003 * 109.47004 * 163.68471 * 16 14 10 39 39 H 0.96992 * 119.99859 * 352.25687 * 17 16 14 40 40 H 0.96999 * 119.99704 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0922 0.0000 4 1 1.9732 2.0074 -0.0004 5 6 3.6096 0.7275 0.0006 6 6 3.6883 -0.6150 0.0015 7 6 2.3072 -1.1092 -0.0057 8 6 1.8704 -2.5155 -0.0134 9 8 0.6907 -2.7853 -0.1357 10 7 2.7779 -3.5037 0.1150 11 6 4.2129 -3.3208 0.3988 12 6 4.6595 -4.6565 1.0492 13 6 3.8299 -5.6873 0.2388 14 6 2.5017 -4.9423 -0.0110 15 1 1.7621 -5.2442 0.7305 16 6 1.9881 -5.2521 -1.4186 17 7 0.5900 -4.8295 -1.5322 18 6 -0.0376 -4.8597 -2.7490 19 1 0.4980 -5.1954 -3.6247 20 6 -1.3622 -4.4588 -2.8568 21 7 -2.0147 -4.0492 -1.7896 22 14 -2.2186 -4.5005 -4.5163 23 1 -1.2736 -4.9972 -5.5486 24 1 -3.3933 -5.4062 -4.4446 25 1 -2.6698 -3.1320 -4.8751 26 1 -0.3633 0.0003 -1.0277 27 1 -0.3633 -0.8901 0.5135 28 1 -0.3634 0.8898 0.5141 29 1 4.4497 1.4062 0.0003 30 1 4.5890 -1.2108 0.0018 31 1 4.7628 -3.1437 -0.5255 32 1 4.3599 -2.4935 1.0932 33 1 4.3959 -4.6875 2.1064 34 1 5.7283 -4.8193 0.9102 35 1 3.6608 -6.5914 0.8236 36 1 4.3215 -5.9261 -0.7043 37 1 2.5906 -4.7157 -2.1515 38 1 2.0599 -6.3239 -1.6038 39 1 0.1089 -4.5283 -0.7457 40 1 -2.9402 -3.7687 -1.8650 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666407377.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:51 Heat of formation + Delta-G solvation = 43.151280 kcal Electronic energy + Delta-G solvation = -22445.059000 eV Core-core repulsion = 19261.604589 eV Total energy + Delta-G solvation = -3183.454411 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.99995 -39.21611 -36.58385 -34.12591 -31.84904 -31.21310 -30.96434 -30.19286 -28.50738 -26.14828 -24.80716 -23.29424 -22.17795 -21.30531 -20.51186 -19.76346 -17.95127 -17.40953 -16.69013 -16.08753 -15.36493 -14.69933 -14.54458 -14.17062 -13.70774 -13.36072 -13.27522 -13.16605 -12.86262 -12.75313 -12.40635 -12.28932 -12.17357 -12.03409 -11.56343 -11.30355 -11.22781 -11.01489 -10.76250 -10.64719 -10.45910 -10.35395 -9.79818 -9.41521 -8.75290 -8.60161 -8.56985 -7.97830 -7.76112 -6.49092 -5.39259 -2.65875 2.22213 2.64942 3.30197 3.58839 3.63810 3.66120 3.75317 4.25270 4.77285 4.82348 4.90211 5.07734 5.14116 5.18539 5.48443 5.52937 5.58123 5.61175 5.75030 5.83805 5.87371 5.90804 6.02866 6.06990 6.09154 6.17373 6.22324 6.31020 6.39698 6.60723 6.68644 6.75624 6.99568 7.00214 7.12923 7.30757 7.63379 7.96291 8.33222 8.76207 9.20566 9.90818 10.57775 10.98533 11.81513 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013969 B = 0.007316 C = 0.005206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.917562 B = 3826.115751 C = 5377.473592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.103 3.897 3 N -0.558 5.558 4 H 0.411 0.589 5 C -0.029 4.029 6 C -0.179 4.179 7 C -0.217 4.217 8 C 0.586 3.414 9 O -0.476 6.476 10 N -0.614 5.614 11 C 0.100 3.900 12 C -0.135 4.135 13 C -0.125 4.125 14 C 0.133 3.867 15 H 0.072 0.928 16 C 0.146 3.854 17 N -0.720 5.720 18 C -0.232 4.232 19 H 0.060 0.940 20 C -0.012 4.012 21 N -0.915 5.915 22 Si 0.894 3.106 23 H -0.284 1.284 24 H -0.295 1.295 25 H -0.296 1.296 26 H 0.081 0.919 27 H 0.104 0.896 28 H 0.054 0.946 29 H 0.163 0.837 30 H 0.149 0.851 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.018 0.982 38 H 0.015 0.985 39 H 0.400 0.600 40 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.694 8.298 8.221 19.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.014 4.014 3 N -0.154 5.154 4 H 0.247 0.753 5 C -0.156 4.156 6 C -0.204 4.204 7 C -0.227 4.227 8 C 0.375 3.625 9 O -0.348 6.348 10 N -0.351 5.351 11 C -0.023 4.023 12 C -0.173 4.173 13 C -0.163 4.163 14 C 0.029 3.971 15 H 0.090 0.910 16 C 0.017 3.983 17 N -0.370 5.370 18 C -0.364 4.364 19 H 0.078 0.922 20 C -0.208 4.208 21 N -0.563 5.563 22 Si 0.726 3.274 23 H -0.210 1.210 24 H -0.222 1.222 25 H -0.223 1.223 26 H 0.099 0.901 27 H 0.123 0.877 28 H 0.073 0.927 29 H 0.181 0.819 30 H 0.166 0.834 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.036 0.964 38 H 0.032 0.968 39 H 0.241 0.759 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 14.885 8.334 7.995 18.840 hybrid contribution -0.493 0.637 -0.933 1.232 sum 14.392 8.970 7.062 18.370 Atomic orbital electron populations 1.20539 0.86636 1.03641 1.04012 1.20414 0.93866 0.85478 1.01650 1.41566 1.06205 1.08222 1.59384 0.75275 1.21644 0.85623 0.96432 1.11938 1.22443 0.96415 0.93485 1.08045 1.20232 0.92758 0.92450 1.17221 1.17021 0.85088 0.83027 0.77324 1.90910 1.15271 1.82458 1.46138 1.48155 1.07872 1.05801 1.73289 1.22519 0.82913 0.97766 0.99131 1.22834 0.99731 0.94958 0.99760 1.22623 0.95186 0.97920 1.00583 1.21801 0.96188 0.80065 0.99026 0.91028 1.21009 0.88705 0.96285 0.92345 1.42755 1.06516 1.78172 1.09545 1.19195 0.93862 1.35924 0.87424 0.92161 1.24652 0.97073 1.02739 0.96324 1.69765 1.09744 1.50272 1.26547 0.86301 0.79641 0.76896 0.84528 1.20955 1.22233 1.22316 0.90084 0.87736 0.92686 0.81947 0.83352 0.92145 0.90384 0.90907 0.90473 0.90450 0.90571 0.96404 0.96772 0.75936 0.94311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.48 9.81 36.01 0.35 -1.13 16 2 C 0.10 1.65 7.17 -81.88 -0.59 1.07 16 3 N -0.56 -6.60 5.90 -9.10 -0.05 -6.66 16 4 H 0.41 3.39 8.96 -40.82 -0.37 3.02 16 5 C -0.03 -0.33 11.89 -16.82 -0.20 -0.53 16 6 C -0.18 -2.47 9.26 -37.50 -0.35 -2.82 16 7 C -0.22 -3.87 6.18 -103.35 -0.64 -4.51 16 8 C 0.59 12.42 7.55 -12.59 -0.10 12.32 16 9 O -0.48 -12.25 11.57 5.25 0.06 -12.19 16 10 N -0.61 -11.10 3.06 -164.19 -0.50 -11.60 16 11 C 0.10 1.30 5.12 -2.41 -0.01 1.29 16 12 C -0.13 -1.45 7.10 -24.46 -0.17 -1.62 16 13 C -0.12 -1.62 6.44 -24.89 -0.16 -1.78 16 14 C 0.13 2.45 3.02 -66.95 -0.20 2.24 16 15 H 0.07 1.44 8.10 -51.93 -0.42 1.02 16 16 C 0.15 3.31 5.61 -4.04 -0.02 3.29 16 17 N -0.72 -20.48 4.40 -59.90 -0.26 -20.74 16 18 C -0.23 -7.16 9.99 -15.06 -0.15 -7.31 16 19 H 0.06 1.82 7.83 -52.48 -0.41 1.41 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 21 N -0.91 -29.83 13.06 55.49 0.72 -29.11 16 22 Si 0.89 24.07 29.55 -169.99 -5.02 19.05 16 23 H -0.28 -7.43 7.11 56.52 0.40 -7.03 16 24 H -0.29 -7.90 7.11 56.52 0.40 -7.50 16 25 H -0.30 -7.98 7.11 56.52 0.40 -7.57 16 26 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 27 H 0.10 2.03 6.64 -51.93 -0.34 1.69 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.15 1.72 5.15 -52.49 -0.27 1.45 16 31 H 0.06 0.75 7.74 -51.93 -0.40 0.34 16 32 H 0.08 0.91 5.95 -51.93 -0.31 0.61 16 33 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.08 0.95 7.85 -51.93 -0.41 0.55 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.01 0.33 8.08 -51.93 -0.42 -0.09 16 39 H 0.40 12.16 5.13 -40.82 -0.21 11.95 16 40 H 0.25 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 320.14 15.07 4.82 4.82 Total: -1.00 -37.82 320.14 -8.22 -46.04 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -5.65 Total: 10.34 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -2.33 Total: 0.04 kcal Atomic # 7 Polarization: -68.02 SS G_CDS: -0.10 Total: -68.11 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.06 Total: -12.19 kcal Atomic # 14 Polarization: 24.07 SS G_CDS: -5.02 Total: 19.05 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -37.82 -8.22 -46.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666407377.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.194 kcal (2) G-P(sol) polarization free energy of solvation -37.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds