Wall clock time and date at job start Mon Mar 30 2020 01:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34660 * 125.79883 * 2 1 4 4 H 0.97000 * 124.84801 * 359.97438 * 3 2 1 5 5 C 1.36450 * 110.29819 * 179.97438 * 3 2 1 6 6 C 1.34488 * 108.85699 * 359.97438 * 5 3 2 7 7 C 1.36771 * 125.80512 * 180.29329 * 2 1 3 8 8 C 1.47258 * 126.94074 * 0.02562 * 7 2 1 9 9 O 1.21626 * 120.00356 * 6.56714 * 8 7 2 10 10 N 1.34782 * 120.00005 * 186.56065 * 8 7 2 11 11 C 1.47419 * 125.64350 * 6.23455 * 10 8 7 12 12 C 1.55133 * 104.72042 * 155.81644 * 11 10 8 13 13 C 1.55158 * 101.48719 * 37.29182 * 12 11 10 14 14 C 1.47021 * 125.64780 * 186.53795 * 10 8 7 15 15 H 1.09002 * 109.88616 * 300.44574 * 14 10 8 16 16 C 1.53001 * 109.87922 * 61.61199 * 14 10 8 17 17 N 1.46506 * 109.47000 * 283.67998 * 16 14 10 18 18 C 1.36942 * 119.99809 * 172.24424 * 17 16 14 19 19 H 1.08004 * 119.99896 * 0.02562 * 18 17 16 20 20 C 1.38810 * 119.99762 * 180.02562 * 18 17 16 21 21 N 1.31621 * 119.99892 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99902 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47355 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47307 * 120.00186 * 22 20 18 25 25 H 1.48495 * 109.47217 * 240.00081 * 22 20 18 26 26 H 1.08999 * 109.46898 * 89.98352 * 1 2 3 27 27 H 1.08996 * 109.47237 * 209.97794 * 1 2 3 28 28 H 1.08999 * 109.47564 * 329.98176 * 1 2 3 29 29 H 1.08002 * 125.57003 * 179.97438 * 5 3 2 30 30 H 1.07991 * 126.83559 * 179.97438 * 6 5 3 31 31 H 1.09001 * 110.36877 * 274.74373 * 11 10 8 32 32 H 1.09003 * 110.37227 * 37.07303 * 11 10 8 33 33 H 1.09008 * 111.19032 * 279.19174 * 12 11 10 34 34 H 1.09000 * 110.94353 * 155.28776 * 12 11 10 35 35 H 1.08992 * 110.72339 * 205.97131 * 13 12 11 36 36 H 1.09002 * 110.86868 * 82.76742 * 13 12 11 37 37 H 1.08991 * 109.47586 * 43.68429 * 16 14 10 38 38 H 1.09003 * 109.47004 * 163.68471 * 16 14 10 39 39 H 0.96992 * 119.99859 * 352.25687 * 17 16 14 40 40 H 0.96999 * 119.99704 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0922 0.0000 4 1 1.9732 2.0074 -0.0004 5 6 3.6096 0.7275 0.0006 6 6 3.6883 -0.6150 0.0015 7 6 2.3072 -1.1092 -0.0057 8 6 1.8704 -2.5155 -0.0134 9 8 0.6907 -2.7853 -0.1357 10 7 2.7779 -3.5037 0.1150 11 6 4.2129 -3.3208 0.3988 12 6 4.6595 -4.6565 1.0492 13 6 3.8299 -5.6873 0.2388 14 6 2.5017 -4.9423 -0.0110 15 1 1.7621 -5.2442 0.7305 16 6 1.9881 -5.2521 -1.4186 17 7 0.5900 -4.8295 -1.5322 18 6 -0.0376 -4.8597 -2.7490 19 1 0.4980 -5.1954 -3.6247 20 6 -1.3622 -4.4588 -2.8568 21 7 -2.0147 -4.0492 -1.7896 22 14 -2.2186 -4.5005 -4.5163 23 1 -1.2736 -4.9972 -5.5486 24 1 -3.3933 -5.4062 -4.4446 25 1 -2.6698 -3.1320 -4.8751 26 1 -0.3633 0.0003 -1.0277 27 1 -0.3633 -0.8901 0.5135 28 1 -0.3634 0.8898 0.5141 29 1 4.4497 1.4062 0.0003 30 1 4.5890 -1.2108 0.0018 31 1 4.7628 -3.1437 -0.5255 32 1 4.3599 -2.4935 1.0932 33 1 4.3959 -4.6875 2.1064 34 1 5.7283 -4.8193 0.9102 35 1 3.6608 -6.5914 0.8236 36 1 4.3215 -5.9261 -0.7043 37 1 2.5906 -4.7157 -2.1515 38 1 2.0599 -6.3239 -1.6038 39 1 0.1089 -4.5283 -0.7457 40 1 -2.9402 -3.7687 -1.8650 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666407377.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:51 Heat of formation + Delta-G solvation = 15.506313 kcal Electronic energy + Delta-G solvation = -22446.257776 eV Core-core repulsion = 19261.604589 eV Total energy + Delta-G solvation = -3184.653186 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.11631 -40.56948 -38.06470 -36.19013 -33.47384 -32.75864 -32.32373 -31.39889 -30.16177 -27.36146 -26.60227 -24.82891 -23.93970 -22.47470 -21.63740 -21.08461 -19.39809 -18.96255 -18.32797 -17.39763 -16.79991 -16.59432 -15.98372 -15.62124 -15.16828 -14.88873 -14.81318 -14.51804 -14.43903 -13.93592 -13.81439 -13.57827 -13.47594 -13.44071 -13.12729 -13.04977 -12.88165 -12.60741 -12.42041 -12.20235 -11.93944 -11.72567 -11.56821 -11.46300 -10.89433 -10.39595 -9.68040 -9.38790 -8.98759 -8.76704 -7.77887 -5.06083 0.91946 1.40948 1.44252 1.53566 1.65083 2.19155 2.56157 2.59663 2.80613 3.48676 3.68431 3.78174 3.98684 4.05420 4.18417 4.30927 4.36726 4.38726 4.47438 4.55597 4.64711 4.69441 4.77224 4.86188 4.89853 4.98490 5.03982 5.05821 5.09954 5.20390 5.22944 5.33956 5.45560 5.50277 5.76416 5.88968 6.09205 6.39048 6.73942 6.93641 7.44801 7.70516 8.35632 8.63003 9.43634 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013969 B = 0.007316 C = 0.005206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.917562 B = 3826.115751 C = 5377.473592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.083 3.917 3 N -0.539 5.539 4 H 0.431 0.569 5 C 0.000 4.000 6 C -0.195 4.195 7 C -0.255 4.255 8 C 0.569 3.431 9 O -0.541 6.541 10 N -0.617 5.617 11 C 0.093 3.907 12 C -0.119 4.119 13 C -0.115 4.115 14 C 0.132 3.868 15 H 0.042 0.958 16 C 0.144 3.856 17 N -0.735 5.735 18 C -0.246 4.246 19 H 0.062 0.938 20 C -0.075 4.075 21 N -0.950 5.950 22 Si 0.967 3.033 23 H -0.269 1.269 24 H -0.290 1.290 25 H -0.296 1.296 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.215 0.785 30 H 0.170 0.830 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.117 0.883 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.008 0.992 38 H 0.023 0.977 39 H 0.388 0.612 40 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.243 9.577 8.168 22.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.036 4.036 3 N -0.136 5.136 4 H 0.270 0.730 5 C -0.127 4.127 6 C -0.219 4.219 7 C -0.265 4.265 8 C 0.360 3.640 9 O -0.419 6.419 10 N -0.352 5.352 11 C -0.029 4.029 12 C -0.157 4.157 13 C -0.153 4.153 14 C 0.028 3.972 15 H 0.061 0.939 16 C 0.016 3.984 17 N -0.383 5.383 18 C -0.378 4.378 19 H 0.080 0.920 20 C -0.268 4.268 21 N -0.601 5.601 22 Si 0.797 3.203 23 H -0.194 1.194 24 H -0.217 1.217 25 H -0.224 1.224 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.112 0.888 29 H 0.232 0.768 30 H 0.187 0.813 31 H 0.090 0.910 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.135 0.865 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.026 0.974 38 H 0.041 0.959 39 H 0.226 0.774 40 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 18.528 9.614 7.944 22.335 hybrid contribution -1.513 0.271 -0.889 1.776 sum 17.015 9.886 7.054 20.905 Atomic orbital electron populations 1.20308 0.87870 1.03472 1.02316 1.20258 0.93639 0.86786 1.02888 1.41534 1.06169 1.08185 1.57696 0.72963 1.22422 0.86099 0.96332 1.07872 1.22679 0.95019 0.94803 1.09357 1.20332 0.95647 0.91047 1.19470 1.17786 0.84795 0.85021 0.76435 1.90867 1.17990 1.83654 1.49345 1.48292 1.09896 1.05002 1.71986 1.22860 0.79704 0.99951 1.00361 1.22855 1.01452 0.92045 0.99313 1.22618 0.92162 0.98527 1.01984 1.21781 0.98629 0.81586 0.95244 0.93948 1.21201 0.85952 0.96126 0.95109 1.42985 1.08703 1.78231 1.08375 1.19592 0.94422 1.35391 0.88423 0.91988 1.25536 0.97918 1.03010 1.00316 1.69984 1.09690 1.51465 1.28933 0.85159 0.78411 0.76632 0.80095 1.19363 1.21729 1.22357 0.92565 0.91890 0.88807 0.76827 0.81259 0.90965 0.88765 0.90329 0.86472 0.88703 0.89538 0.97406 0.95909 0.77393 0.94825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.87 9.81 71.24 0.70 -2.17 16 2 C 0.08 2.69 7.17 41.78 0.30 2.99 16 3 N -0.54 -11.34 5.90 -182.72 -1.08 -12.42 16 4 H 0.43 5.66 8.96 -92.71 -0.83 4.83 16 5 C 0.00 0.01 11.89 83.12 0.99 1.00 16 6 C -0.20 -4.86 9.26 23.62 0.22 -4.64 16 7 C -0.25 -9.23 6.18 -19.04 -0.12 -9.34 16 8 C 0.57 25.47 7.55 86.61 0.65 26.12 16 9 O -0.54 -30.43 11.57 -4.11 -0.05 -30.47 16 10 N -0.62 -22.72 3.06 -791.62 -2.43 -25.14 16 11 C 0.09 2.19 5.12 86.93 0.44 2.63 16 12 C -0.12 -2.12 7.10 32.07 0.23 -1.89 16 13 C -0.11 -2.74 6.44 31.78 0.20 -2.54 16 14 C 0.13 4.98 3.02 45.34 0.14 5.12 16 15 H 0.04 1.83 8.10 -2.39 -0.02 1.81 16 16 C 0.14 6.80 5.61 86.38 0.48 7.28 16 17 N -0.73 -44.17 4.40 -343.44 -1.51 -45.68 16 18 C -0.25 -15.78 9.99 84.03 0.84 -14.94 16 19 H 0.06 3.84 7.83 -2.91 -0.02 3.82 16 20 C -0.07 -4.85 5.50 84.86 0.47 -4.38 16 21 N -0.95 -65.27 13.06 21.65 0.28 -64.99 16 22 Si 0.97 51.18 29.55 68.60 2.03 53.21 16 23 H -0.27 -13.41 7.11 99.48 0.71 -12.70 16 24 H -0.29 -15.03 7.11 99.48 0.71 -14.33 16 25 H -0.30 -15.58 7.11 99.48 0.71 -14.87 16 26 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.06 2.73 6.64 -2.39 -0.02 2.72 16 28 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.22 1.73 8.06 -2.91 -0.02 1.70 16 30 H 0.17 3.31 5.15 -2.92 -0.02 3.30 16 31 H 0.07 1.56 7.74 -2.39 -0.02 1.54 16 32 H 0.09 1.94 5.95 -2.39 -0.01 1.92 16 33 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.12 1.26 8.14 -2.39 -0.02 1.25 16 35 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.09 1.92 7.85 -2.39 -0.02 1.91 16 37 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.02 1.05 8.08 -2.39 -0.02 1.03 16 39 H 0.39 25.34 5.13 -92.71 -0.48 24.86 16 40 H 0.24 16.04 8.31 -92.71 -0.77 15.27 16 Total: -1.00 -90.58 320.14 2.56 -88.03 By element: Atomic # 1 Polarization: 32.47 SS G_CDS: -0.24 Total: 32.23 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: 5.55 Total: 5.24 kcal Atomic # 7 Polarization: -143.50 SS G_CDS: -4.73 Total: -148.23 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -0.05 Total: -30.47 kcal Atomic # 14 Polarization: 51.18 SS G_CDS: 2.03 Total: 53.21 kcal Total: -90.58 2.56 -88.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666407377.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.532 kcal (2) G-P(sol) polarization free energy of solvation -90.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds