Wall clock time and date at job start Mon Mar 30 2020 01:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38394 * 120.85537 * 2 1 4 4 C 1.38309 * 119.30603 * 180.02562 * 3 2 1 5 5 N 1.31959 * 121.08135 * 0.02562 * 4 3 2 6 6 C 1.31672 * 121.87665 * 359.71838 * 5 4 3 7 7 C 1.39553 * 120.56214 * 0.54479 * 6 5 4 8 8 C 1.47843 * 120.55558 * 179.75204 * 7 6 5 9 9 O 1.21552 * 119.99896 * 226.26386 * 8 7 6 10 10 N 1.34780 * 120.00223 * 46.26201 * 8 7 6 11 11 C 1.46491 * 119.99765 * 5.32277 * 10 8 7 12 12 C 1.46497 * 119.99922 * 185.31950 * 10 8 7 13 13 H 1.09002 * 109.47156 * 0.02562 * 12 10 8 14 14 C 1.52996 * 109.47172 * 240.00148 * 12 10 8 15 15 C 1.53006 * 109.46739 * 119.99993 * 12 10 8 16 16 N 1.46499 * 109.47253 * 305.00043 * 15 12 10 17 17 C 1.36935 * 119.99737 * 180.02562 * 16 15 12 18 18 H 1.08002 * 120.00064 * 359.97438 * 17 16 15 19 19 C 1.38810 * 120.00110 * 179.97438 * 17 16 15 20 20 N 1.31619 * 120.00350 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 119.99884 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47356 * 89.99698 * 21 19 17 23 23 H 1.48494 * 109.47257 * 209.99963 * 21 19 17 24 24 H 1.48504 * 109.46792 * 330.00051 * 21 19 17 25 25 H 1.09001 * 109.46377 * 265.04395 * 1 2 3 26 26 H 1.08999 * 109.47135 * 25.03600 * 1 2 3 27 27 H 1.08999 * 109.47267 * 145.04630 * 1 2 3 28 28 H 1.08001 * 120.35030 * 0.02562 * 3 2 1 29 29 H 1.08003 * 119.46104 * 179.97438 * 4 3 2 30 30 H 1.08003 * 119.71256 * 180.26835 * 6 5 4 31 31 H 1.08998 * 109.47266 * 274.34621 * 11 10 8 32 32 H 1.09001 * 109.47071 * 154.34963 * 11 10 8 33 33 H 1.08999 * 109.47230 * 34.35129 * 11 10 8 34 34 H 1.09006 * 109.46765 * 180.02562 * 14 12 10 35 35 H 1.08996 * 109.47301 * 299.99726 * 14 12 10 36 36 H 1.08997 * 109.47527 * 60.00390 * 14 12 10 37 37 H 1.08995 * 109.46805 * 65.00302 * 15 12 10 38 38 H 1.09007 * 109.46905 * 185.00114 * 15 12 10 39 39 H 0.96996 * 119.99819 * 359.97438 * 16 15 12 40 40 H 0.96996 * 119.99709 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5994 1.1507 -0.0005 5 7 4.2498 0.0025 -0.0016 6 6 3.6197 -1.1536 0.0034 7 6 2.2250 -1.2017 -0.0015 8 6 1.5177 -2.4999 -0.0014 9 8 0.5906 -2.6869 -0.7649 10 7 1.9009 -3.4761 0.8452 11 6 2.9393 -3.2132 1.8444 12 6 1.2787 -4.8001 0.7662 13 1 0.5355 -4.8053 -0.0311 14 6 0.6005 -5.1252 2.0985 15 6 2.3511 -5.8505 0.4700 16 7 3.0809 -5.4746 -0.7434 17 6 4.0943 -6.2704 -1.2070 18 1 4.3558 -7.1749 -0.6779 19 6 4.7855 -5.9146 -2.3570 20 7 5.7599 -6.6792 -2.8023 21 14 4.3327 -4.3505 -3.2726 22 1 5.1309 -3.2169 -2.7408 23 1 4.6204 -4.5229 -4.7192 24 1 2.8868 -4.0685 -3.0856 25 1 -0.3632 -0.0888 1.0239 26 1 -0.3633 0.9311 -0.4349 27 1 -0.3634 -0.8423 -0.5888 28 1 1.6966 2.1345 0.0004 29 1 4.1558 2.0763 -0.0010 30 1 4.1872 -2.0726 0.0068 31 1 3.9212 -3.3722 1.3985 32 1 2.8102 -3.8896 2.6893 33 1 2.8594 -2.1822 2.1889 34 1 0.1380 -6.1105 2.0398 35 1 1.3441 -5.1202 2.8955 36 1 -0.1634 -4.3769 2.3095 37 1 3.0451 -5.9076 1.3084 38 1 1.8778 -6.8215 0.3232 39 1 2.8458 -4.6625 -1.2188 40 1 6.2431 -6.4303 -3.6057 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666876963.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:13 Heat of formation + Delta-G solvation = 20.276607 kcal Electronic energy + Delta-G solvation = -22395.198151 eV Core-core repulsion = 19210.751820 eV Total energy + Delta-G solvation = -3184.446331 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.87920 -39.20877 -36.65760 -34.25876 -33.91299 -32.51243 -31.11033 -30.30080 -28.03304 -26.92554 -25.95774 -24.53769 -22.64608 -22.09514 -21.07724 -19.23534 -17.60176 -17.54745 -16.68695 -16.40878 -16.24514 -15.03064 -14.75485 -14.35672 -14.33157 -14.02866 -13.79530 -13.25441 -13.01223 -12.87352 -12.83296 -12.71249 -12.48186 -12.39193 -12.17655 -12.02672 -11.94888 -11.75858 -10.95172 -10.83191 -10.58136 -10.13386 -10.06756 -9.61414 -9.58689 -9.39553 -9.20680 -8.89741 -8.48670 -7.22962 -5.76665 -3.11724 0.69392 1.08442 2.76626 3.04262 3.39296 3.47242 3.49844 3.66817 4.26739 4.51447 4.54681 4.61031 4.62208 4.91234 5.00099 5.17698 5.25060 5.26665 5.34234 5.42280 5.46703 5.51506 5.54535 5.61148 5.71870 5.78690 5.82393 5.93515 5.95123 6.00675 6.18973 6.19438 6.34111 6.49563 6.59161 6.79042 7.45046 7.81271 7.98863 8.21473 8.42632 9.21610 9.94582 10.14316 11.41576 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015123 B = 0.007496 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.059389 B = 3734.399508 C = 4772.906397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.006 3.994 3 C -0.185 4.185 4 C 0.116 3.884 5 N -0.488 5.488 6 C 0.141 3.859 7 C -0.183 4.183 8 C 0.566 3.434 9 O -0.532 6.532 10 N -0.592 5.592 11 C 0.075 3.925 12 C 0.121 3.879 13 H 0.102 0.898 14 C -0.155 4.155 15 C 0.148 3.852 16 N -0.752 5.752 17 C -0.244 4.244 18 H 0.091 0.909 19 C 0.010 3.990 20 N -0.932 5.932 21 Si 0.869 3.131 22 H -0.281 1.281 23 H -0.289 1.289 24 H -0.274 1.274 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.099 0.901 28 H 0.139 0.861 29 H 0.159 0.841 30 H 0.167 0.833 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.031 0.969 38 H 0.038 0.962 39 H 0.361 0.639 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.996 14.753 12.040 21.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.002 4.002 3 C -0.205 4.205 4 C -0.040 4.040 5 N -0.196 5.196 6 C -0.017 4.017 7 C -0.188 4.188 8 C 0.353 3.647 9 O -0.409 6.409 10 N -0.324 5.324 11 C -0.068 4.068 12 C 0.019 3.981 13 H 0.120 0.880 14 C -0.213 4.213 15 C 0.020 3.980 16 N -0.398 5.398 17 C -0.373 4.373 18 H 0.109 0.891 19 C -0.186 4.186 20 N -0.580 5.580 21 Si 0.699 3.301 22 H -0.208 1.208 23 H -0.215 1.215 24 H -0.200 1.200 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.117 0.883 28 H 0.157 0.843 29 H 0.176 0.824 30 H 0.184 0.816 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.049 0.951 38 H 0.056 0.944 39 H 0.194 0.806 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.411 14.444 11.625 20.792 hybrid contribution -0.892 1.105 -0.809 1.634 sum -10.303 15.548 10.816 21.561 Atomic orbital electron populations 1.21092 0.89694 1.04860 1.03393 1.20357 0.97114 0.91400 0.91348 1.21996 0.95601 0.98403 1.04481 1.22970 0.91721 0.96520 0.92826 1.67776 1.40697 0.98207 1.12961 1.23273 0.90428 0.96926 0.91067 1.20874 0.95552 0.94355 1.08023 1.18064 0.82957 0.83333 0.80343 1.90725 1.29090 1.81100 1.40009 1.47697 1.39225 1.11461 1.34010 1.21903 0.91652 1.01234 0.92014 1.21531 0.96297 0.81315 0.98987 0.87998 1.22048 1.00468 1.02051 0.96742 1.21004 0.92102 0.94685 0.90200 1.42650 1.40918 1.27924 1.28322 1.19030 1.07071 1.04241 1.07003 0.89120 1.24604 0.98041 0.98024 0.97957 1.69687 1.24621 1.38613 1.25084 0.86759 0.78454 0.84745 0.80117 1.20770 1.21517 1.20044 0.90621 0.90956 0.88257 0.84303 0.82385 0.81640 0.91364 0.90311 0.91868 0.91051 0.92129 0.92527 0.95113 0.94377 0.80582 0.93045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 9.60 36.01 0.35 -1.14 16 2 C 0.01 0.08 5.95 -103.91 -0.62 -0.54 16 3 C -0.18 -1.96 9.79 -39.50 -0.39 -2.35 16 4 C 0.12 1.34 11.17 -17.47 -0.20 1.14 16 5 N -0.49 -7.29 10.35 -12.91 -0.13 -7.42 16 6 C 0.14 2.23 9.22 -17.13 -0.16 2.07 16 7 C -0.18 -2.83 4.81 -104.82 -0.50 -3.33 16 8 C 0.57 9.74 6.55 -12.33 -0.08 9.66 16 9 O -0.53 -10.57 14.15 5.32 0.08 -10.49 16 10 N -0.59 -9.18 2.24 -175.06 -0.39 -9.57 16 11 C 0.07 0.95 8.17 59.84 0.49 1.44 16 12 C 0.12 1.91 2.79 -67.93 -0.19 1.72 16 13 H 0.10 1.81 6.91 -51.93 -0.36 1.45 16 14 C -0.15 -1.78 9.18 37.16 0.34 -1.44 16 15 C 0.15 2.79 5.56 -4.04 -0.02 2.77 16 16 N -0.75 -18.15 5.24 -59.91 -0.31 -18.47 16 17 C -0.24 -6.95 10.47 -15.06 -0.16 -7.11 16 18 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 19 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 20 N -0.93 -29.69 13.97 55.49 0.78 -28.92 16 21 Si 0.87 23.24 27.74 -169.99 -4.71 18.53 16 22 H -0.28 -7.38 7.11 56.52 0.40 -6.98 16 23 H -0.29 -7.80 7.11 56.52 0.40 -7.40 16 24 H -0.27 -7.33 6.52 56.52 0.37 -6.96 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 27 H 0.10 1.37 5.76 -51.93 -0.30 1.07 16 28 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 29 H 0.16 1.27 8.06 -52.48 -0.42 0.85 16 30 H 0.17 2.76 6.41 -52.48 -0.34 2.43 16 31 H 0.07 0.96 6.87 -51.93 -0.36 0.60 16 32 H 0.08 0.84 6.43 -51.93 -0.33 0.50 16 33 H 0.06 0.70 6.80 -51.93 -0.35 0.35 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.62 6.66 -51.93 -0.35 0.28 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.03 0.56 7.84 -51.93 -0.41 0.15 16 38 H 0.04 0.72 8.14 -51.92 -0.42 0.30 16 39 H 0.36 8.98 4.93 -40.82 -0.20 8.78 16 40 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 LS Contribution 324.91 15.07 4.90 4.90 Total: -1.00 -34.84 324.91 -6.58 -41.42 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -5.54 Total: 6.94 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -1.23 Total: 3.09 kcal Atomic # 7 Polarization: -64.31 SS G_CDS: -0.07 Total: -64.38 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.08 Total: -10.49 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -4.71 Total: 18.53 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.84 -6.58 -41.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666876963.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.692 kcal (2) G-P(sol) polarization free energy of solvation -34.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds