Wall clock time and date at job start Mon Mar 30 2020 01:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38394 * 120.85537 * 2 1 4 4 C 1.38309 * 119.30603 * 180.02562 * 3 2 1 5 5 N 1.31959 * 121.08135 * 0.02562 * 4 3 2 6 6 C 1.31672 * 121.87665 * 359.71838 * 5 4 3 7 7 C 1.39553 * 120.56214 * 0.54479 * 6 5 4 8 8 C 1.47843 * 120.55558 * 179.75204 * 7 6 5 9 9 O 1.21552 * 119.99896 * 226.26386 * 8 7 6 10 10 N 1.34780 * 120.00223 * 46.26201 * 8 7 6 11 11 C 1.46491 * 119.99765 * 5.32277 * 10 8 7 12 12 C 1.46497 * 119.99922 * 185.31950 * 10 8 7 13 13 H 1.09002 * 109.47156 * 0.02562 * 12 10 8 14 14 C 1.52996 * 109.47172 * 240.00148 * 12 10 8 15 15 C 1.53006 * 109.46739 * 119.99993 * 12 10 8 16 16 N 1.46499 * 109.47253 * 305.00043 * 15 12 10 17 17 C 1.36935 * 119.99737 * 180.02562 * 16 15 12 18 18 H 1.08002 * 120.00064 * 359.97438 * 17 16 15 19 19 C 1.38810 * 120.00110 * 179.97438 * 17 16 15 20 20 N 1.31619 * 120.00350 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 119.99884 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47356 * 89.99698 * 21 19 17 23 23 H 1.48494 * 109.47257 * 209.99963 * 21 19 17 24 24 H 1.48504 * 109.46792 * 330.00051 * 21 19 17 25 25 H 1.09001 * 109.46377 * 265.04395 * 1 2 3 26 26 H 1.08999 * 109.47135 * 25.03600 * 1 2 3 27 27 H 1.08999 * 109.47267 * 145.04630 * 1 2 3 28 28 H 1.08001 * 120.35030 * 0.02562 * 3 2 1 29 29 H 1.08003 * 119.46104 * 179.97438 * 4 3 2 30 30 H 1.08003 * 119.71256 * 180.26835 * 6 5 4 31 31 H 1.08998 * 109.47266 * 274.34621 * 11 10 8 32 32 H 1.09001 * 109.47071 * 154.34963 * 11 10 8 33 33 H 1.08999 * 109.47230 * 34.35129 * 11 10 8 34 34 H 1.09006 * 109.46765 * 180.02562 * 14 12 10 35 35 H 1.08996 * 109.47301 * 299.99726 * 14 12 10 36 36 H 1.08997 * 109.47527 * 60.00390 * 14 12 10 37 37 H 1.08995 * 109.46805 * 65.00302 * 15 12 10 38 38 H 1.09007 * 109.46905 * 185.00114 * 15 12 10 39 39 H 0.96996 * 119.99819 * 359.97438 * 16 15 12 40 40 H 0.96996 * 119.99709 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5994 1.1507 -0.0005 5 7 4.2498 0.0025 -0.0016 6 6 3.6197 -1.1536 0.0034 7 6 2.2250 -1.2017 -0.0015 8 6 1.5177 -2.4999 -0.0014 9 8 0.5906 -2.6869 -0.7649 10 7 1.9009 -3.4761 0.8452 11 6 2.9393 -3.2132 1.8444 12 6 1.2787 -4.8001 0.7662 13 1 0.5355 -4.8053 -0.0311 14 6 0.6005 -5.1252 2.0985 15 6 2.3511 -5.8505 0.4700 16 7 3.0809 -5.4746 -0.7434 17 6 4.0943 -6.2704 -1.2070 18 1 4.3558 -7.1749 -0.6779 19 6 4.7855 -5.9146 -2.3570 20 7 5.7599 -6.6792 -2.8023 21 14 4.3327 -4.3505 -3.2726 22 1 5.1309 -3.2169 -2.7408 23 1 4.6204 -4.5229 -4.7192 24 1 2.8868 -4.0685 -3.0856 25 1 -0.3632 -0.0888 1.0239 26 1 -0.3633 0.9311 -0.4349 27 1 -0.3634 -0.8423 -0.5888 28 1 1.6966 2.1345 0.0004 29 1 4.1558 2.0763 -0.0010 30 1 4.1872 -2.0726 0.0068 31 1 3.9212 -3.3722 1.3985 32 1 2.8102 -3.8896 2.6893 33 1 2.8594 -2.1822 2.1889 34 1 0.1380 -6.1105 2.0398 35 1 1.3441 -5.1202 2.8955 36 1 -0.1634 -4.3769 2.3095 37 1 3.0451 -5.9076 1.3084 38 1 1.8778 -6.8215 0.3232 39 1 2.8458 -4.6625 -1.2188 40 1 6.2431 -6.4303 -3.6057 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666876963.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:13 Heat of formation + Delta-G solvation = -3.869068 kcal Electronic energy + Delta-G solvation = -22396.245186 eV Core-core repulsion = 19210.751820 eV Total energy + Delta-G solvation = -3185.493366 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.99047 -40.36440 -38.06107 -36.05061 -34.90484 -34.01952 -32.81885 -31.56826 -28.95443 -28.02779 -27.61634 -25.63574 -24.14258 -23.49880 -22.36107 -20.59833 -19.58655 -18.73328 -17.79224 -17.48383 -17.36047 -16.72462 -16.32608 -15.82963 -15.47092 -15.27351 -14.96382 -14.85389 -14.36881 -14.22816 -13.91603 -13.84888 -13.79570 -13.70950 -13.43134 -13.13487 -13.04114 -12.93032 -12.86104 -12.46826 -12.31808 -11.91249 -11.80162 -11.26078 -11.06551 -10.58258 -10.47372 -10.22908 -9.73259 -9.34896 -8.10314 -5.40519 -0.32688 0.11098 1.23548 1.27588 1.32347 1.53757 1.87220 2.36509 2.65875 3.22105 3.23097 3.44702 3.56153 3.64263 3.73289 3.92955 4.00942 4.17989 4.21404 4.33245 4.38606 4.49522 4.56439 4.63931 4.66799 4.75333 4.78946 4.81103 4.87502 4.94666 5.09120 5.10559 5.25414 5.30491 5.52166 5.58016 5.71037 6.14984 6.23417 6.81419 6.96632 7.00638 7.78268 7.95109 9.11384 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015123 B = 0.007496 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.059389 B = 3734.399508 C = 4772.906397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.002 4.002 3 C -0.167 4.167 4 C 0.116 3.884 5 N -0.514 5.514 6 C 0.125 3.875 7 C -0.202 4.202 8 C 0.559 3.441 9 O -0.569 6.569 10 N -0.592 5.592 11 C 0.075 3.925 12 C 0.127 3.873 13 H 0.078 0.922 14 C -0.143 4.143 15 C 0.143 3.857 16 N -0.757 5.757 17 C -0.223 4.223 18 H 0.070 0.930 19 C -0.049 4.049 20 N -0.975 5.975 21 Si 0.930 3.070 22 H -0.275 1.275 23 H -0.291 1.291 24 H -0.278 1.278 25 H 0.090 0.910 26 H 0.100 0.900 27 H 0.068 0.932 28 H 0.183 0.817 29 H 0.197 0.803 30 H 0.144 0.856 31 H 0.049 0.951 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.045 0.955 38 H 0.042 0.958 39 H 0.358 0.642 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.296 17.496 13.682 24.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.010 4.010 3 C -0.186 4.186 4 C -0.040 4.040 5 N -0.223 5.223 6 C -0.032 4.032 7 C -0.207 4.207 8 C 0.348 3.652 9 O -0.449 6.449 10 N -0.323 5.323 11 C -0.067 4.067 12 C 0.023 3.977 13 H 0.096 0.904 14 C -0.201 4.201 15 C 0.017 3.983 16 N -0.402 5.402 17 C -0.354 4.354 18 H 0.088 0.912 19 C -0.241 4.241 20 N -0.626 5.626 21 Si 0.759 3.241 22 H -0.202 1.202 23 H -0.218 1.218 24 H -0.204 1.204 25 H 0.108 0.892 26 H 0.119 0.881 27 H 0.087 0.913 28 H 0.200 0.800 29 H 0.214 0.786 30 H 0.162 0.838 31 H 0.068 0.932 32 H 0.121 0.879 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.190 0.810 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.729 17.186 13.326 24.250 hybrid contribution -0.512 0.273 -1.230 1.360 sum -11.241 17.459 12.096 24.031 Atomic orbital electron populations 1.21077 0.88499 1.04989 1.03982 1.20715 0.98114 0.91308 0.90899 1.22432 0.95235 0.99179 1.01731 1.23662 0.92697 0.96580 0.91024 1.67760 1.41632 0.98893 1.14023 1.22964 0.90493 0.96887 0.92863 1.20814 0.95407 0.94463 1.10039 1.18461 0.82636 0.84288 0.79862 1.90699 1.30831 1.81937 1.41456 1.47826 1.39403 1.10978 1.34084 1.22025 0.89896 1.02981 0.91792 1.21436 0.94713 0.80694 1.00818 0.90388 1.21976 1.00796 1.03015 0.94318 1.21261 0.92817 0.95945 0.88318 1.42734 1.40400 1.27194 1.29900 1.19074 1.06978 1.03348 1.05972 0.91215 1.25190 0.98722 1.00850 0.99374 1.69815 1.26335 1.40559 1.25933 0.85791 0.77804 0.81790 0.78694 1.20150 1.21763 1.20394 0.89157 0.88104 0.91325 0.79967 0.78639 0.83831 0.93216 0.87869 0.90265 0.89744 0.90323 0.91568 0.93659 0.94056 0.80995 0.93291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 9.60 71.24 0.68 -1.88 16 2 C 0.00 -0.05 5.95 -19.40 -0.12 -0.16 16 3 C -0.17 -2.86 9.79 22.32 0.22 -2.64 16 4 C 0.12 2.29 11.17 84.69 0.95 3.24 16 5 N -0.51 -14.67 10.35 -194.75 -2.01 -16.68 16 6 C 0.13 3.95 9.22 85.03 0.78 4.74 16 7 C -0.20 -6.12 4.81 -19.99 -0.10 -6.21 16 8 C 0.56 19.29 6.55 86.79 0.57 19.86 16 9 O -0.57 -23.06 14.15 -3.88 -0.05 -23.11 16 10 N -0.59 -18.06 2.24 -826.03 -1.85 -19.91 16 11 C 0.08 1.83 8.17 127.77 1.04 2.87 16 12 C 0.13 3.88 2.79 44.99 0.13 4.01 16 13 H 0.08 2.80 6.91 -2.39 -0.02 2.78 16 14 C -0.14 -2.94 9.18 71.98 0.66 -2.28 16 15 C 0.14 5.31 5.56 86.38 0.48 5.79 16 16 N -0.76 -36.84 5.24 -343.44 -1.80 -38.64 16 17 C -0.22 -12.92 10.47 84.03 0.88 -12.04 16 18 H 0.07 4.30 8.06 -2.91 -0.02 4.28 16 19 C -0.05 -3.00 5.50 84.86 0.47 -2.53 16 20 N -0.98 -63.63 13.97 21.65 0.30 -63.32 16 21 Si 0.93 49.55 27.74 68.60 1.90 51.45 16 22 H -0.28 -14.26 7.11 99.48 0.71 -13.55 16 23 H -0.29 -15.50 7.11 99.48 0.71 -14.79 16 24 H -0.28 -14.78 6.52 99.48 0.65 -14.13 16 25 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.10 1.38 8.07 -2.39 -0.02 1.36 16 27 H 0.07 1.85 5.76 -2.39 -0.01 1.84 16 28 H 0.18 1.53 8.06 -2.91 -0.02 1.51 16 29 H 0.20 2.24 8.06 -2.91 -0.02 2.22 16 30 H 0.14 5.00 6.41 -2.91 -0.02 4.98 16 31 H 0.05 1.41 6.87 -2.39 -0.02 1.39 16 32 H 0.10 1.95 6.43 -2.39 -0.02 1.93 16 33 H 0.08 1.67 6.80 -2.39 -0.02 1.66 16 34 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.08 1.35 6.66 -2.39 -0.02 1.33 16 36 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.05 1.58 7.84 -2.39 -0.02 1.56 16 38 H 0.04 1.53 8.14 -2.38 -0.02 1.52 16 39 H 0.36 18.00 4.93 -92.71 -0.46 17.54 16 40 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 Total: -1.00 -78.10 324.91 3.67 -74.44 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: 0.54 Total: 23.03 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 6.65 Total: 12.75 kcal Atomic # 7 Polarization: -133.20 SS G_CDS: -5.37 Total: -138.56 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.05 Total: -23.11 kcal Atomic # 14 Polarization: 49.55 SS G_CDS: 1.90 Total: 51.45 kcal Total: -78.10 3.67 -74.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666876963.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.568 kcal (2) G-P(sol) polarization free energy of solvation -78.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds