Wall clock time and date at job start Mon Mar 30 2020 01:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38397 * 120.85691 * 2 1 4 4 C 1.38313 * 119.30278 * 180.02562 * 3 2 1 5 5 N 1.31953 * 121.08002 * 0.02562 * 4 3 2 6 6 C 1.31668 * 121.87997 * 359.68472 * 5 4 3 7 7 C 1.39559 * 120.56495 * 0.57903 * 6 5 4 8 8 C 1.47844 * 120.55813 * 179.73322 * 7 6 5 9 9 O 1.21552 * 119.99734 * 131.00338 * 8 7 6 10 10 N 1.34778 * 119.99881 * 311.27844 * 8 7 6 11 11 C 1.46491 * 120.00260 * 4.11953 * 10 8 7 12 12 C 1.46502 * 119.99662 * 184.11903 * 10 8 7 13 13 H 1.08997 * 109.46900 * 0.02562 * 12 10 8 14 14 C 1.53004 * 109.46979 * 119.99919 * 12 10 8 15 15 C 1.52998 * 109.47232 * 239.99870 * 12 10 8 16 16 N 1.46500 * 109.46990 * 55.00415 * 15 12 10 17 17 C 1.36934 * 120.00067 * 180.02562 * 16 15 12 18 18 H 1.08002 * 120.00087 * 359.97438 * 17 16 15 19 19 C 1.38809 * 120.00001 * 179.97438 * 17 16 15 20 20 N 1.31628 * 119.99611 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00231 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.46903 * 89.99775 * 21 19 17 23 23 H 1.48497 * 109.46933 * 209.99614 * 21 19 17 24 24 H 1.48499 * 109.46924 * 329.99999 * 21 19 17 25 25 H 1.09001 * 109.47110 * 274.33482 * 1 2 3 26 26 H 1.09001 * 109.46908 * 34.32834 * 1 2 3 27 27 H 1.09002 * 109.47606 * 154.32867 * 1 2 3 28 28 H 1.07996 * 120.34545 * 0.02562 * 3 2 1 29 29 H 1.07995 * 119.45498 * 179.97438 * 4 3 2 30 30 H 1.07998 * 119.71467 * 180.28918 * 6 5 4 31 31 H 1.09008 * 109.47077 * 85.06551 * 11 10 8 32 32 H 1.08997 * 109.47479 * 205.06938 * 11 10 8 33 33 H 1.09010 * 109.47301 * 325.07017 * 11 10 8 34 34 H 1.08994 * 109.47345 * 180.02562 * 14 12 10 35 35 H 1.09004 * 109.47075 * 300.00407 * 14 12 10 36 36 H 1.09003 * 109.46712 * 59.99803 * 14 12 10 37 37 H 1.09003 * 109.46998 * 175.00259 * 15 12 10 38 38 H 1.08998 * 109.47169 * 295.00587 * 15 12 10 39 39 H 0.97000 * 120.00208 * 359.97438 * 16 15 12 40 40 H 0.96999 * 119.99545 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1881 0.0000 4 6 3.5995 1.1506 -0.0005 5 7 4.2498 0.0024 -0.0016 6 6 3.6196 -1.1537 0.0040 7 6 2.2249 -1.2017 -0.0008 8 6 1.5175 -2.5000 -0.0004 9 8 0.6174 -2.7014 0.7913 10 7 1.8743 -3.4621 -0.8742 11 6 3.0207 -3.2561 -1.7627 12 6 1.1157 -4.7139 -0.9355 13 1 0.3060 -4.6840 -0.2065 14 6 0.5317 -4.8881 -2.3389 15 6 2.0438 -5.8886 -0.6198 16 7 2.6948 -5.6628 0.6730 17 6 3.5761 -6.5874 1.1665 18 1 3.7909 -7.4833 0.6029 19 6 4.1934 -6.3733 2.3912 20 7 5.0401 -7.2623 2.8658 21 14 3.8224 -4.8234 3.3658 22 1 2.6708 -5.0711 4.2701 23 1 5.0124 -4.4485 4.1712 24 1 3.4892 -3.7188 2.4310 25 1 -0.3633 0.0777 1.0247 26 1 -0.3633 0.8487 -0.5795 27 1 -0.3634 -0.9262 -0.4452 28 1 1.6966 2.1345 0.0004 29 1 4.1559 2.0762 -0.0010 30 1 4.1870 -2.0726 0.0077 31 1 3.9377 -3.5350 -1.2433 32 1 2.9056 -3.8735 -2.6535 33 1 3.0721 -2.2064 -2.0522 34 1 -0.0331 -5.8192 -2.3844 35 1 -0.1294 -4.0512 -2.5638 36 1 1.3413 -4.9178 -3.0681 37 1 1.4625 -6.8098 -0.5779 38 1 2.8017 -5.9723 -1.3986 39 1 2.5022 -4.8581 1.1791 40 1 5.4712 -7.1128 3.7218 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666876964.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:16 Heat of formation + Delta-G solvation = 20.127438 kcal Electronic energy + Delta-G solvation = -22343.281932 eV Core-core repulsion = 19158.829133 eV Total energy + Delta-G solvation = -3184.452799 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.89824 -39.21193 -36.62357 -34.25580 -33.95889 -32.52472 -31.09871 -30.30212 -28.05661 -26.94751 -25.96016 -24.54488 -22.67548 -22.09112 -21.05461 -19.21206 -17.61698 -17.53051 -16.72131 -16.44633 -16.22959 -15.13248 -14.71511 -14.35787 -14.32911 -13.97131 -13.77150 -13.28814 -13.03297 -12.87142 -12.85295 -12.67894 -12.48550 -12.43974 -12.19381 -12.02356 -11.94558 -11.73058 -10.95166 -10.82594 -10.58117 -10.11842 -10.09730 -9.66140 -9.57538 -9.43832 -9.20714 -8.88751 -8.47794 -7.21148 -5.75508 -3.10293 0.69224 1.05552 2.76960 3.04627 3.41609 3.47718 3.51410 3.63819 4.24131 4.48462 4.51697 4.60335 4.62511 4.88843 4.99605 5.18160 5.23626 5.25000 5.31481 5.41844 5.44921 5.49654 5.55416 5.59930 5.70386 5.79283 5.82282 5.89590 5.93437 5.99993 6.11472 6.18392 6.33961 6.46658 6.59229 6.79795 7.45665 7.77826 8.00408 8.22723 8.43934 9.23437 9.96413 10.16457 11.42736 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015783 B = 0.007054 C = 0.005739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.687026 B = 3968.697217 C = 4878.137103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.004 3.996 3 C -0.184 4.184 4 C 0.115 3.885 5 N -0.489 5.489 6 C 0.139 3.861 7 C -0.179 4.179 8 C 0.564 3.436 9 O -0.530 6.530 10 N -0.592 5.592 11 C 0.074 3.926 12 C 0.121 3.879 13 H 0.102 0.898 14 C -0.155 4.155 15 C 0.149 3.851 16 N -0.752 5.752 17 C -0.243 4.243 18 H 0.090 0.910 19 C 0.008 3.992 20 N -0.933 5.933 21 Si 0.881 3.119 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.280 1.280 25 H 0.085 0.915 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.139 0.861 29 H 0.159 0.841 30 H 0.166 0.834 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.038 0.962 38 H 0.030 0.970 39 H 0.363 0.637 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.082 16.649 -12.334 22.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.004 4.004 3 C -0.204 4.204 4 C -0.042 4.042 5 N -0.197 5.197 6 C -0.019 4.019 7 C -0.184 4.184 8 C 0.351 3.649 9 O -0.407 6.407 10 N -0.324 5.324 11 C -0.069 4.069 12 C 0.019 3.981 13 H 0.120 0.880 14 C -0.214 4.214 15 C 0.021 3.979 16 N -0.398 5.398 17 C -0.373 4.373 18 H 0.108 0.892 19 C -0.188 4.188 20 N -0.581 5.581 21 Si 0.712 3.288 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.206 1.206 25 H 0.103 0.897 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.157 0.843 29 H 0.176 0.824 30 H 0.183 0.817 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.048 0.952 39 H 0.196 0.804 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.508 16.318 -11.912 21.553 hybrid contribution -0.869 1.040 0.869 1.610 sum -8.377 17.358 -11.043 22.213 Atomic orbital electron populations 1.20877 0.89562 1.03298 1.03609 1.20350 0.97082 0.91432 0.91577 1.21967 0.95603 0.98387 1.04420 1.22947 0.91710 0.96496 0.93000 1.67763 1.40700 0.98208 1.13074 1.23267 0.90470 0.96880 0.91255 1.20910 0.95626 0.94326 1.07573 1.18045 0.82905 0.83295 0.80608 1.90783 1.31254 1.80760 1.37913 1.47680 1.31104 1.16277 1.37339 1.21941 0.89022 1.01443 0.94478 1.21527 0.95248 0.83168 0.98207 0.88001 1.22061 1.00961 1.02231 0.96098 1.20987 0.93783 0.94149 0.89016 1.42656 1.52863 1.24317 1.19987 1.19033 1.15902 1.00339 1.01999 0.89177 1.24621 0.98997 0.97685 0.97513 1.69701 1.32381 1.35384 1.20644 0.86608 0.77392 0.84197 0.80624 1.21040 1.21700 1.20631 0.89666 0.91048 0.90635 0.84275 0.82385 0.81675 0.91353 0.90366 0.91773 0.90999 0.92591 0.92095 0.94409 0.95237 0.80373 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 9.26 36.01 0.33 -0.94 16 2 C 0.00 0.05 5.95 -103.91 -0.62 -0.57 16 3 C -0.18 -1.89 9.82 -39.50 -0.39 -2.28 16 4 C 0.11 1.27 11.17 -17.47 -0.20 1.07 16 5 N -0.49 -6.97 10.35 -12.91 -0.13 -7.10 16 6 C 0.14 2.12 8.98 -17.13 -0.15 1.97 16 7 C -0.18 -2.73 4.90 -104.82 -0.51 -3.25 16 8 C 0.56 9.79 6.10 -12.33 -0.08 9.71 16 9 O -0.53 -10.74 15.02 5.32 0.08 -10.66 16 10 N -0.59 -9.26 2.24 -175.05 -0.39 -9.65 16 11 C 0.07 0.95 8.20 59.84 0.49 1.44 16 12 C 0.12 1.91 2.79 -67.93 -0.19 1.72 16 13 H 0.10 1.80 6.91 -51.93 -0.36 1.44 16 14 C -0.16 -1.78 9.18 37.16 0.34 -1.44 16 15 C 0.15 2.83 5.56 -4.04 -0.02 2.80 16 16 N -0.75 -18.36 5.24 -59.91 -0.31 -18.67 16 17 C -0.24 -6.98 10.47 -15.06 -0.16 -7.14 16 18 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 19 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 20 N -0.93 -29.86 13.97 55.49 0.78 -29.08 16 21 Si 0.88 23.70 27.74 -169.99 -4.71 18.98 16 22 H -0.28 -7.74 7.11 56.52 0.40 -7.34 16 23 H -0.29 -7.81 7.11 56.52 0.40 -7.40 16 24 H -0.28 -7.29 6.52 56.52 0.37 -6.92 16 25 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.07 0.57 8.13 -51.93 -0.42 0.14 16 27 H 0.07 0.94 6.59 -51.93 -0.34 0.59 16 28 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 29 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.17 2.60 6.31 -52.49 -0.33 2.27 16 31 H 0.07 0.98 7.08 -51.92 -0.37 0.61 16 32 H 0.08 0.84 6.44 -51.93 -0.33 0.51 16 33 H 0.06 0.72 6.28 -51.92 -0.33 0.40 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.63 6.66 -51.93 -0.35 0.28 16 37 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.03 0.54 7.84 -51.93 -0.41 0.14 16 39 H 0.36 9.15 4.93 -40.82 -0.20 8.95 16 40 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 LS Contribution 325.38 15.07 4.90 4.90 Total: -1.00 -35.22 325.38 -6.60 -41.82 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -5.56 Total: 6.21 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -1.24 Total: 3.24 kcal Atomic # 7 Polarization: -64.44 SS G_CDS: -0.07 Total: -64.50 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.08 Total: -10.66 kcal Atomic # 14 Polarization: 23.70 SS G_CDS: -4.71 Total: 18.98 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.22 -6.60 -41.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666876964.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.951 kcal (2) G-P(sol) polarization free energy of solvation -35.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds