Wall clock time and date at job start Mon Mar 30 2020 01:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38397 * 120.85691 * 2 1 4 4 C 1.38313 * 119.30278 * 180.02562 * 3 2 1 5 5 N 1.31953 * 121.08002 * 0.02562 * 4 3 2 6 6 C 1.31668 * 121.87997 * 359.68472 * 5 4 3 7 7 C 1.39559 * 120.56495 * 0.57903 * 6 5 4 8 8 C 1.47844 * 120.55813 * 179.73322 * 7 6 5 9 9 O 1.21552 * 119.99734 * 131.00338 * 8 7 6 10 10 N 1.34778 * 119.99881 * 311.27844 * 8 7 6 11 11 C 1.46491 * 120.00260 * 4.11953 * 10 8 7 12 12 C 1.46502 * 119.99662 * 184.11903 * 10 8 7 13 13 H 1.08997 * 109.46900 * 0.02562 * 12 10 8 14 14 C 1.53004 * 109.46979 * 119.99919 * 12 10 8 15 15 C 1.52998 * 109.47232 * 239.99870 * 12 10 8 16 16 N 1.46500 * 109.46990 * 55.00415 * 15 12 10 17 17 C 1.36934 * 120.00067 * 180.02562 * 16 15 12 18 18 H 1.08002 * 120.00087 * 359.97438 * 17 16 15 19 19 C 1.38809 * 120.00001 * 179.97438 * 17 16 15 20 20 N 1.31628 * 119.99611 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00231 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.46903 * 89.99775 * 21 19 17 23 23 H 1.48497 * 109.46933 * 209.99614 * 21 19 17 24 24 H 1.48499 * 109.46924 * 329.99999 * 21 19 17 25 25 H 1.09001 * 109.47110 * 274.33482 * 1 2 3 26 26 H 1.09001 * 109.46908 * 34.32834 * 1 2 3 27 27 H 1.09002 * 109.47606 * 154.32867 * 1 2 3 28 28 H 1.07996 * 120.34545 * 0.02562 * 3 2 1 29 29 H 1.07995 * 119.45498 * 179.97438 * 4 3 2 30 30 H 1.07998 * 119.71467 * 180.28918 * 6 5 4 31 31 H 1.09008 * 109.47077 * 85.06551 * 11 10 8 32 32 H 1.08997 * 109.47479 * 205.06938 * 11 10 8 33 33 H 1.09010 * 109.47301 * 325.07017 * 11 10 8 34 34 H 1.08994 * 109.47345 * 180.02562 * 14 12 10 35 35 H 1.09004 * 109.47075 * 300.00407 * 14 12 10 36 36 H 1.09003 * 109.46712 * 59.99803 * 14 12 10 37 37 H 1.09003 * 109.46998 * 175.00259 * 15 12 10 38 38 H 1.08998 * 109.47169 * 295.00587 * 15 12 10 39 39 H 0.97000 * 120.00208 * 359.97438 * 16 15 12 40 40 H 0.96999 * 119.99545 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1881 0.0000 4 6 3.5995 1.1506 -0.0005 5 7 4.2498 0.0024 -0.0016 6 6 3.6196 -1.1537 0.0040 7 6 2.2249 -1.2017 -0.0008 8 6 1.5175 -2.5000 -0.0004 9 8 0.6174 -2.7014 0.7913 10 7 1.8743 -3.4621 -0.8742 11 6 3.0207 -3.2561 -1.7627 12 6 1.1157 -4.7139 -0.9355 13 1 0.3060 -4.6840 -0.2065 14 6 0.5317 -4.8881 -2.3389 15 6 2.0438 -5.8886 -0.6198 16 7 2.6948 -5.6628 0.6730 17 6 3.5761 -6.5874 1.1665 18 1 3.7909 -7.4833 0.6029 19 6 4.1934 -6.3733 2.3912 20 7 5.0401 -7.2623 2.8658 21 14 3.8224 -4.8234 3.3658 22 1 2.6708 -5.0711 4.2701 23 1 5.0124 -4.4485 4.1712 24 1 3.4892 -3.7188 2.4310 25 1 -0.3633 0.0777 1.0247 26 1 -0.3633 0.8487 -0.5795 27 1 -0.3634 -0.9262 -0.4452 28 1 1.6966 2.1345 0.0004 29 1 4.1559 2.0762 -0.0010 30 1 4.1870 -2.0726 0.0077 31 1 3.9377 -3.5350 -1.2433 32 1 2.9056 -3.8735 -2.6535 33 1 3.0721 -2.2064 -2.0522 34 1 -0.0331 -5.8192 -2.3844 35 1 -0.1294 -4.0512 -2.5638 36 1 1.3413 -4.9178 -3.0681 37 1 1.4625 -6.8098 -0.5779 38 1 2.8017 -5.9723 -1.3986 39 1 2.5022 -4.8581 1.1791 40 1 5.4712 -7.1128 3.7218 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666876964.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:15 Heat of formation + Delta-G solvation = -4.430625 kcal Electronic energy + Delta-G solvation = -22344.346850 eV Core-core repulsion = 19158.829133 eV Total energy + Delta-G solvation = -3185.517717 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.99275 -40.35930 -38.03517 -36.05550 -34.92464 -34.03205 -32.80843 -31.56072 -28.95614 -28.06100 -27.62450 -25.62647 -24.13797 -23.51559 -22.32856 -20.57482 -19.59590 -18.72503 -17.81177 -17.47727 -17.35365 -16.71768 -16.42033 -15.81677 -15.44189 -15.24115 -14.92213 -14.81052 -14.39572 -14.20069 -13.93291 -13.86883 -13.79063 -13.70933 -13.49010 -13.13088 -13.07297 -12.94357 -12.79899 -12.47624 -12.29966 -11.90514 -11.78481 -11.30968 -11.07551 -10.62144 -10.47795 -10.20133 -9.73789 -9.34539 -8.10378 -5.40468 -0.30064 0.11176 1.23954 1.28480 1.32443 1.53906 1.87396 2.36815 2.65991 3.22160 3.23084 3.44673 3.56145 3.64051 3.73390 3.93691 4.01664 4.17439 4.21530 4.32689 4.38596 4.47866 4.53745 4.63008 4.67585 4.75209 4.78470 4.80625 4.86922 4.93569 5.07280 5.09173 5.20934 5.29179 5.51604 5.58056 5.70794 6.15078 6.23370 6.81477 6.97042 7.00965 7.78951 7.95834 9.11321 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015783 B = 0.007054 C = 0.005739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.687026 B = 3968.697217 C = 4878.137103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.005 4.005 3 C -0.166 4.166 4 C 0.116 3.884 5 N -0.511 5.511 6 C 0.125 3.875 7 C -0.201 4.201 8 C 0.558 3.442 9 O -0.571 6.571 10 N -0.592 5.592 11 C 0.074 3.926 12 C 0.126 3.874 13 H 0.079 0.921 14 C -0.143 4.143 15 C 0.143 3.857 16 N -0.758 5.758 17 C -0.223 4.223 18 H 0.069 0.931 19 C -0.051 4.051 20 N -0.976 5.976 21 Si 0.939 3.061 22 H -0.289 1.289 23 H -0.289 1.289 24 H -0.273 1.273 25 H 0.080 0.920 26 H 0.107 0.893 27 H 0.054 0.946 28 H 0.183 0.817 29 H 0.197 0.803 30 H 0.148 0.852 31 H 0.049 0.951 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.042 0.958 38 H 0.043 0.957 39 H 0.359 0.641 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.070 19.615 -14.022 25.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.013 4.013 3 C -0.185 4.185 4 C -0.040 4.040 5 N -0.220 5.220 6 C -0.033 4.033 7 C -0.206 4.206 8 C 0.347 3.653 9 O -0.451 6.451 10 N -0.323 5.323 11 C -0.068 4.068 12 C 0.023 3.977 13 H 0.097 0.903 14 C -0.201 4.201 15 C 0.017 3.983 16 N -0.403 5.403 17 C -0.354 4.354 18 H 0.087 0.913 19 C -0.243 4.243 20 N -0.627 5.627 21 Si 0.769 3.231 22 H -0.216 1.216 23 H -0.215 1.215 24 H -0.199 1.199 25 H 0.098 0.902 26 H 0.125 0.875 27 H 0.073 0.927 28 H 0.200 0.800 29 H 0.214 0.786 30 H 0.165 0.835 31 H 0.067 0.933 32 H 0.121 0.879 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.192 0.808 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.508 19.289 -13.665 25.124 hybrid contribution -0.579 0.143 1.302 1.432 sum -9.087 19.433 -12.363 24.760 Atomic orbital electron populations 1.20881 0.88505 1.03807 1.03719 1.20698 0.98013 0.91392 0.91202 1.22403 0.95304 0.99094 1.01720 1.23653 0.92621 0.96644 0.91091 1.67765 1.41482 0.98807 1.13990 1.23014 0.90407 0.97016 0.92835 1.20849 0.95650 0.94260 1.09857 1.18481 0.82506 0.84296 0.80058 1.90745 1.33182 1.81663 1.39529 1.47821 1.31493 1.15782 1.37229 1.22055 0.87169 1.03088 0.94453 1.21446 0.93784 0.82028 1.00458 0.90252 1.21987 1.01608 1.03408 0.93126 1.21251 0.94411 0.95947 0.86725 1.42745 1.52430 1.23227 1.21869 1.19079 1.15162 0.99897 1.01237 0.91291 1.25216 0.99816 1.00376 0.98927 1.69826 1.34252 1.37361 1.21286 0.85662 0.76787 0.81399 0.79245 1.21571 1.21524 1.19925 0.90160 0.87460 0.92667 0.79987 0.78588 0.83475 0.93253 0.87932 0.90160 0.89664 0.91488 0.90376 0.94049 0.93859 0.80821 0.93291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.22 9.26 71.24 0.66 -1.56 16 2 C 0.00 -0.11 5.95 -19.40 -0.12 -0.22 16 3 C -0.17 -2.73 9.82 22.33 0.22 -2.52 16 4 C 0.12 2.15 11.17 84.69 0.95 3.10 16 5 N -0.51 -13.76 10.35 -194.76 -2.01 -15.78 16 6 C 0.12 3.76 8.98 85.04 0.76 4.53 16 7 C -0.20 -6.00 4.90 -19.99 -0.10 -6.09 16 8 C 0.56 19.39 6.10 86.79 0.53 19.92 16 9 O -0.57 -23.56 15.02 -3.88 -0.06 -23.62 16 10 N -0.59 -18.22 2.24 -826.00 -1.85 -20.08 16 11 C 0.07 1.83 8.20 127.77 1.05 2.88 16 12 C 0.13 3.87 2.79 44.99 0.13 3.99 16 13 H 0.08 2.83 6.91 -2.39 -0.02 2.81 16 14 C -0.14 -2.92 9.18 71.98 0.66 -2.26 16 15 C 0.14 5.36 5.56 86.38 0.48 5.84 16 16 N -0.76 -37.21 5.24 -343.46 -1.80 -39.01 16 17 C -0.22 -13.01 10.47 84.03 0.88 -12.13 16 18 H 0.07 4.28 8.06 -2.91 -0.02 4.26 16 19 C -0.05 -3.15 5.50 84.86 0.47 -2.68 16 20 N -0.98 -63.95 13.97 21.65 0.30 -63.65 16 21 Si 0.94 50.28 27.74 68.60 1.90 52.18 16 22 H -0.29 -15.57 7.11 99.48 0.71 -14.87 16 23 H -0.29 -15.26 7.11 99.48 0.71 -14.55 16 24 H -0.27 -14.15 6.52 99.48 0.65 -13.50 16 25 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.11 1.28 8.13 -2.39 -0.02 1.26 16 27 H 0.05 1.32 6.59 -2.39 -0.02 1.30 16 28 H 0.18 1.42 8.06 -2.91 -0.02 1.40 16 29 H 0.20 2.02 8.06 -2.91 -0.02 2.00 16 30 H 0.15 4.80 6.31 -2.91 -0.02 4.78 16 31 H 0.05 1.42 7.08 -2.38 -0.02 1.40 16 32 H 0.10 1.97 6.44 -2.39 -0.02 1.95 16 33 H 0.08 1.72 6.28 -2.38 -0.01 1.71 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.08 1.34 6.66 -2.39 -0.02 1.33 16 37 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.04 1.53 7.84 -2.39 -0.02 1.51 16 39 H 0.36 18.26 4.93 -92.71 -0.46 17.81 16 40 H 0.26 16.18 8.31 -92.71 -0.77 15.41 16 Total: -1.00 -78.81 325.38 3.58 -75.23 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: 0.54 Total: 21.94 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: 6.56 Total: 12.79 kcal Atomic # 7 Polarization: -133.15 SS G_CDS: -5.37 Total: -138.52 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.06 Total: -23.62 kcal Atomic # 14 Polarization: 50.28 SS G_CDS: 1.90 Total: 52.18 kcal Total: -78.81 3.58 -75.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666876964.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.796 kcal (2) G-P(sol) polarization free energy of solvation -78.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds