Wall clock time and date at job start Mon Mar 30 2020 01:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38632 * 120.75419 * 2 1 4 4 C 1.38561 * 119.34723 * 180.02562 * 3 2 1 5 5 C 1.50706 * 119.54307 * 179.97438 * 4 3 2 6 6 N 1.31519 * 120.90461 * 0.25913 * 4 3 2 7 7 C 1.32713 * 121.64532 * 359.47110 * 6 4 3 8 8 C 1.48163 * 119.72765 * 180.24568 * 7 6 4 9 9 O 1.21515 * 120.00485 * 180.27181 * 8 7 6 10 10 N 1.34778 * 119.99910 * 0.28019 * 8 7 6 11 11 C 1.46499 * 120.00284 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.47003 * 34.99452 * 11 10 8 13 13 C 1.53001 * 109.46873 * 274.99464 * 11 10 8 14 14 C 1.52995 * 109.47296 * 154.99772 * 11 10 8 15 15 N 1.46501 * 109.47213 * 304.99330 * 14 11 10 16 16 C 1.36930 * 120.00238 * 179.97438 * 15 14 11 17 17 H 1.08001 * 120.00006 * 0.02562 * 16 15 14 18 18 C 1.38817 * 120.00127 * 180.02562 * 16 15 14 19 19 N 1.31610 * 119.99741 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99899 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47049 * 60.00241 * 20 18 16 22 22 H 1.48502 * 109.46785 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47026 * 299.99943 * 20 18 16 24 24 C 1.38583 * 120.75344 * 180.02562 * 2 1 3 25 25 H 1.09006 * 109.46901 * 89.99651 * 1 2 3 26 26 H 1.08996 * 109.47321 * 210.00146 * 1 2 3 27 27 H 1.09004 * 109.47252 * 330.01013 * 1 2 3 28 28 H 1.07997 * 120.32612 * 359.97438 * 3 2 1 29 29 H 1.08999 * 109.47015 * 90.00503 * 5 4 3 30 30 H 1.09000 * 109.46646 * 209.99656 * 5 4 3 31 31 H 1.09000 * 109.47248 * 330.00373 * 5 4 3 32 32 H 0.96998 * 119.99736 * 359.97438 * 10 8 7 33 33 H 1.08997 * 109.47111 * 179.97438 * 13 11 10 34 34 H 1.08997 * 109.47296 * 299.99809 * 13 11 10 35 35 H 1.09005 * 109.46850 * 60.00220 * 13 11 10 36 36 H 1.09003 * 109.47447 * 64.99824 * 14 11 10 37 37 H 1.09005 * 109.47363 * 184.99970 * 14 11 10 38 38 H 0.97003 * 119.99441 * 0.02562 * 15 14 11 39 39 H 0.97003 * 119.99913 * 179.97438 * 19 18 16 40 40 H 1.07995 * 120.47328 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1914 0.0000 4 6 3.6011 1.1573 -0.0005 5 6 4.3762 2.4498 -0.0011 6 7 4.2487 0.0126 -0.0062 7 6 3.6082 -1.1497 -0.0011 8 6 4.3805 -2.4141 -0.0022 9 8 3.7992 -3.4812 -0.0026 10 7 5.7279 -2.3808 -0.0027 11 6 6.4916 -3.6309 -0.0044 12 1 5.9624 -4.3792 -0.5944 13 6 6.6508 -4.1332 1.4320 14 6 7.8728 -3.3840 -0.6143 15 7 7.7201 -2.7912 -1.9453 16 6 8.8279 -2.4802 -2.6876 17 1 9.8143 -2.6724 -2.2921 18 6 8.6831 -1.9180 -3.9486 19 7 7.4810 -1.6843 -4.4307 20 14 10.1945 -1.4945 -4.9615 21 1 10.9870 -2.7262 -5.2068 22 1 9.7723 -0.9114 -6.2603 23 1 11.0254 -0.5100 -4.2230 24 6 2.2156 -1.1909 -0.0005 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8901 0.5137 28 1 1.6936 2.1367 -0.0004 29 1 4.5635 2.7616 1.0264 30 1 5.3261 2.3035 -0.5153 31 1 3.7995 3.2190 -0.5148 32 1 6.1919 -1.5290 -0.0027 33 1 7.2187 -5.0636 1.4307 34 1 7.1801 -3.3850 2.0220 35 1 5.6667 -4.3092 1.8665 36 1 8.4356 -2.7031 0.0243 37 1 8.4079 -4.3301 -0.6973 38 1 6.8341 -2.6182 -2.3003 39 1 7.3798 -1.2910 -5.3117 40 1 1.6958 -2.1376 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669336535.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:59 Heat of formation + Delta-G solvation = -3.207526 kcal Electronic energy + Delta-G solvation = -21245.086229 eV Core-core repulsion = 18059.621550 eV Total energy + Delta-G solvation = -3185.464679 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.62080 -38.96741 -36.11664 -34.34629 -33.54300 -32.81782 -31.08785 -29.81377 -28.09793 -27.55012 -25.67451 -24.54692 -22.56337 -21.27921 -20.83171 -19.95962 -17.67908 -17.03611 -16.48583 -15.94854 -15.60787 -15.08880 -14.75695 -14.33907 -14.07326 -13.59746 -13.54811 -13.46755 -13.22422 -12.94758 -12.72550 -12.34495 -12.27442 -12.21961 -12.16031 -11.95607 -11.73740 -11.54739 -10.86901 -10.78305 -10.43745 -10.05254 -10.01603 -9.69516 -9.57706 -9.37991 -8.99388 -8.86767 -8.59955 -6.91067 -5.72780 -3.02634 0.72285 1.18046 2.94504 3.42223 3.46238 3.50010 3.51318 3.95187 4.15879 4.47206 4.60727 4.69773 4.91770 5.01933 5.20269 5.29640 5.32986 5.38359 5.50927 5.54404 5.56561 5.59163 5.61984 5.68416 5.71057 5.94765 6.06413 6.08041 6.14364 6.17281 6.24120 6.44775 6.53226 6.60955 6.74693 6.99232 7.71482 7.74614 8.05080 8.44539 8.55255 9.56202 10.12956 10.48356 11.49487 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015219 B = 0.004899 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.317918 B = 5713.888917 C = 6771.470089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.050 4.050 3 C -0.158 4.158 4 C 0.132 3.868 5 C -0.105 4.105 6 N -0.455 5.455 7 C 0.097 3.903 8 C 0.570 3.430 9 O -0.544 6.544 10 N -0.687 5.687 11 C 0.130 3.870 12 H 0.088 0.912 13 C -0.157 4.157 14 C 0.145 3.855 15 N -0.731 5.731 16 C -0.243 4.243 17 H 0.070 0.930 18 C -0.011 4.011 19 N -0.931 5.931 20 Si 0.908 3.092 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.124 4.124 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.136 0.864 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.415 0.585 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.025 0.975 37 H 0.035 0.965 38 H 0.386 0.614 39 H 0.255 0.745 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.078 6.080 12.590 18.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.057 4.057 3 C -0.178 4.178 4 C -0.008 4.008 5 C -0.162 4.162 6 N -0.168 5.168 7 C -0.042 4.042 8 C 0.355 3.645 9 O -0.422 6.422 10 N -0.337 5.337 11 C 0.026 3.974 12 H 0.106 0.894 13 C -0.216 4.216 14 C 0.017 3.983 15 N -0.376 5.376 16 C -0.374 4.374 17 H 0.088 0.912 18 C -0.208 4.208 19 N -0.579 5.579 20 Si 0.738 3.262 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.144 4.144 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.154 0.846 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.252 0.748 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.043 0.957 37 H 0.052 0.948 38 H 0.220 0.780 39 H 0.065 0.935 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.368 5.292 12.514 17.716 hybrid contribution -0.132 0.743 -0.858 1.143 sum -11.500 6.035 11.656 17.451 Atomic orbital electron populations 1.20815 0.89846 1.03321 1.03094 1.20299 0.96951 0.92585 0.95904 1.22022 0.94819 0.98733 1.02221 1.21300 0.91097 0.93879 0.94571 1.20744 1.00889 0.91522 1.03072 1.67428 1.40972 0.97548 1.10856 1.21199 0.91613 0.92208 0.99140 1.17834 0.82697 0.87158 0.76832 1.90740 1.70184 1.29987 1.51289 1.45857 1.05309 1.10910 1.71659 1.21327 0.93413 0.86228 0.96462 0.89394 1.22099 1.01904 1.01256 0.96303 1.20980 0.92152 0.97038 0.88161 1.42350 1.06909 1.74581 1.13775 1.19173 0.87067 1.34084 0.97069 0.91183 1.24745 0.96457 1.01861 0.97694 1.69669 1.20306 1.49443 1.18455 0.86267 0.82199 0.78106 0.79582 1.21285 1.21742 1.21262 1.21968 0.93886 0.99411 0.99183 0.90329 0.90829 0.91000 0.84579 0.90386 0.89738 0.90689 0.74834 0.91525 0.92496 0.92445 0.95729 0.94781 0.77966 0.93504 0.83636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.06 36.01 0.36 -0.52 16 2 C -0.05 -0.57 5.91 -104.35 -0.62 -1.19 16 3 C -0.16 -1.75 9.45 -39.32 -0.37 -2.12 16 4 C 0.13 1.75 6.78 -82.60 -0.56 1.19 16 5 C -0.10 -1.08 10.17 36.01 0.37 -0.72 16 6 N -0.46 -7.43 9.45 -6.06 -0.06 -7.49 16 7 C 0.10 1.63 6.75 -83.01 -0.56 1.07 16 8 C 0.57 10.72 7.78 -12.18 -0.09 10.63 16 9 O -0.54 -11.16 15.99 5.35 0.09 -11.08 16 10 N -0.69 -12.65 4.51 -54.65 -0.25 -12.90 16 11 C 0.13 2.35 2.73 -67.93 -0.19 2.16 16 12 H 0.09 1.75 7.58 -51.93 -0.39 1.35 16 13 C -0.16 -2.28 9.48 37.16 0.35 -1.93 16 14 C 0.14 2.95 5.82 -4.04 -0.02 2.93 16 15 N -0.73 -18.93 5.43 -59.91 -0.33 -19.26 16 16 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 18 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 19 N -0.93 -28.77 13.06 55.49 0.72 -28.05 16 20 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 C -0.12 -1.76 9.34 -39.05 -0.36 -2.13 16 25 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 27 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 28 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 32 H 0.41 7.75 7.93 -40.82 -0.32 7.43 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.39 10.77 7.33 -40.82 -0.30 10.47 16 39 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 40 H 0.15 1.98 7.64 -52.49 -0.40 1.58 16 LS Contribution 343.17 15.07 5.17 5.17 Total: -1.00 -33.47 343.17 -7.64 -41.11 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -6.03 Total: 12.94 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -1.94 Total: 1.92 kcal Atomic # 7 Polarization: -67.79 SS G_CDS: 0.10 Total: -67.70 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.09 Total: -11.08 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.47 -7.64 -41.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669336535.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.902 kcal (2) G-P(sol) polarization free energy of solvation -33.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds