Wall clock time and date at job start Mon Mar 30 2020 01:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38632 * 120.75419 * 2 1 4 4 C 1.38561 * 119.34723 * 180.02562 * 3 2 1 5 5 C 1.50706 * 119.54307 * 179.97438 * 4 3 2 6 6 N 1.31519 * 120.90461 * 0.25913 * 4 3 2 7 7 C 1.32713 * 121.64532 * 359.47110 * 6 4 3 8 8 C 1.48163 * 119.72765 * 180.24568 * 7 6 4 9 9 O 1.21515 * 120.00485 * 180.27181 * 8 7 6 10 10 N 1.34778 * 119.99910 * 0.28019 * 8 7 6 11 11 C 1.46499 * 120.00284 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.47003 * 34.99452 * 11 10 8 13 13 C 1.53001 * 109.46873 * 274.99464 * 11 10 8 14 14 C 1.52995 * 109.47296 * 154.99772 * 11 10 8 15 15 N 1.46501 * 109.47213 * 304.99330 * 14 11 10 16 16 C 1.36930 * 120.00238 * 179.97438 * 15 14 11 17 17 H 1.08001 * 120.00006 * 0.02562 * 16 15 14 18 18 C 1.38817 * 120.00127 * 180.02562 * 16 15 14 19 19 N 1.31610 * 119.99741 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99899 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47049 * 60.00241 * 20 18 16 22 22 H 1.48502 * 109.46785 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47026 * 299.99943 * 20 18 16 24 24 C 1.38583 * 120.75344 * 180.02562 * 2 1 3 25 25 H 1.09006 * 109.46901 * 89.99651 * 1 2 3 26 26 H 1.08996 * 109.47321 * 210.00146 * 1 2 3 27 27 H 1.09004 * 109.47252 * 330.01013 * 1 2 3 28 28 H 1.07997 * 120.32612 * 359.97438 * 3 2 1 29 29 H 1.08999 * 109.47015 * 90.00503 * 5 4 3 30 30 H 1.09000 * 109.46646 * 209.99656 * 5 4 3 31 31 H 1.09000 * 109.47248 * 330.00373 * 5 4 3 32 32 H 0.96998 * 119.99736 * 359.97438 * 10 8 7 33 33 H 1.08997 * 109.47111 * 179.97438 * 13 11 10 34 34 H 1.08997 * 109.47296 * 299.99809 * 13 11 10 35 35 H 1.09005 * 109.46850 * 60.00220 * 13 11 10 36 36 H 1.09003 * 109.47447 * 64.99824 * 14 11 10 37 37 H 1.09005 * 109.47363 * 184.99970 * 14 11 10 38 38 H 0.97003 * 119.99441 * 0.02562 * 15 14 11 39 39 H 0.97003 * 119.99913 * 179.97438 * 19 18 16 40 40 H 1.07995 * 120.47328 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1914 0.0000 4 6 3.6011 1.1573 -0.0005 5 6 4.3762 2.4498 -0.0011 6 7 4.2487 0.0126 -0.0062 7 6 3.6082 -1.1497 -0.0011 8 6 4.3805 -2.4141 -0.0022 9 8 3.7992 -3.4812 -0.0026 10 7 5.7279 -2.3808 -0.0027 11 6 6.4916 -3.6309 -0.0044 12 1 5.9624 -4.3792 -0.5944 13 6 6.6508 -4.1332 1.4320 14 6 7.8728 -3.3840 -0.6143 15 7 7.7201 -2.7912 -1.9453 16 6 8.8279 -2.4802 -2.6876 17 1 9.8143 -2.6724 -2.2921 18 6 8.6831 -1.9180 -3.9486 19 7 7.4810 -1.6843 -4.4307 20 14 10.1945 -1.4945 -4.9615 21 1 10.9870 -2.7262 -5.2068 22 1 9.7723 -0.9114 -6.2603 23 1 11.0254 -0.5100 -4.2230 24 6 2.2156 -1.1909 -0.0005 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8901 0.5137 28 1 1.6936 2.1367 -0.0004 29 1 4.5635 2.7616 1.0264 30 1 5.3261 2.3035 -0.5153 31 1 3.7995 3.2190 -0.5148 32 1 6.1919 -1.5290 -0.0027 33 1 7.2187 -5.0636 1.4307 34 1 7.1801 -3.3850 2.0220 35 1 5.6667 -4.3092 1.8665 36 1 8.4356 -2.7031 0.0243 37 1 8.4079 -4.3301 -0.6973 38 1 6.8341 -2.6182 -2.3003 39 1 7.3798 -1.2910 -5.3117 40 1 1.6958 -2.1376 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669336535.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:58 Heat of formation + Delta-G solvation = -26.518090 kcal Electronic energy + Delta-G solvation = -21246.097051 eV Core-core repulsion = 18059.621550 eV Total energy + Delta-G solvation = -3186.475501 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.76189 -40.31142 -37.74683 -35.57304 -35.14347 -33.92679 -32.88160 -31.42532 -29.01243 -28.34054 -27.45814 -25.80161 -24.46698 -22.31684 -22.19338 -21.36030 -19.32907 -18.72297 -17.73581 -17.00236 -16.91444 -16.68373 -16.34155 -15.67686 -15.44731 -15.20670 -15.09127 -14.66445 -14.12962 -14.04390 -13.74410 -13.68523 -13.59945 -13.40403 -13.11533 -13.09950 -13.00743 -12.75249 -12.66943 -12.58297 -12.21321 -11.92326 -11.73331 -11.39086 -10.96630 -10.53314 -10.50930 -10.19945 -9.92015 -9.03419 -7.94621 -5.25356 -0.37624 0.19894 1.46749 1.50619 1.56562 1.66436 2.08609 2.55701 2.79860 3.05802 3.39244 3.62535 3.67000 3.81143 4.00114 4.01555 4.03279 4.26424 4.37063 4.47722 4.51039 4.62433 4.73209 4.77412 4.78943 4.81653 4.82558 4.90085 4.98018 5.06727 5.13630 5.25792 5.26210 5.28240 5.47919 5.51267 5.68508 6.24841 6.40691 6.83510 7.11806 7.31656 8.04900 8.29085 9.28596 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015219 B = 0.004899 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.317918 B = 5713.888917 C = 6771.470089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.046 4.046 3 C -0.143 4.143 4 C 0.113 3.887 5 C -0.102 4.102 6 N -0.487 5.487 7 C 0.063 3.937 8 C 0.564 3.436 9 O -0.572 6.572 10 N -0.688 5.688 11 C 0.135 3.865 12 H 0.064 0.936 13 C -0.145 4.145 14 C 0.146 3.854 15 N -0.745 5.745 16 C -0.248 4.248 17 H 0.081 0.919 18 C -0.075 4.075 19 N -0.971 5.971 20 Si 0.977 3.023 21 H -0.277 1.277 22 H -0.297 1.297 23 H -0.274 1.274 24 C -0.134 4.134 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.180 0.820 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.412 0.588 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.038 0.962 37 H 0.045 0.955 38 H 0.372 0.628 39 H 0.250 0.750 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.451 7.653 13.553 19.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.054 4.054 3 C -0.163 4.163 4 C -0.027 4.027 5 C -0.159 4.159 6 N -0.200 5.200 7 C -0.074 4.074 8 C 0.350 3.650 9 O -0.453 6.453 10 N -0.337 5.337 11 C 0.030 3.970 12 H 0.082 0.918 13 C -0.203 4.203 14 C 0.019 3.981 15 N -0.388 5.388 16 C -0.379 4.379 17 H 0.099 0.901 18 C -0.267 4.267 19 N -0.621 5.621 20 Si 0.806 3.194 21 H -0.204 1.204 22 H -0.224 1.224 23 H -0.200 1.200 24 C -0.155 4.155 25 H 0.106 0.894 26 H 0.097 0.903 27 H 0.117 0.883 28 H 0.197 0.803 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.122 0.878 32 H 0.249 0.751 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.203 0.797 39 H 0.058 0.942 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.707 6.843 13.527 19.154 hybrid contribution -0.065 0.291 -1.099 1.139 sum -11.773 7.134 12.427 18.546 Atomic orbital electron populations 1.20917 0.86774 1.04954 1.04125 1.20759 0.98991 0.91540 0.94119 1.22488 0.93947 1.00347 0.99511 1.21941 0.92729 0.93800 0.94220 1.20829 0.99882 0.90845 1.04315 1.67350 1.42170 0.98275 1.12223 1.21003 0.92442 0.91665 1.02313 1.18271 0.82741 0.87922 0.76032 1.90695 1.70599 1.31194 1.52763 1.45875 1.05466 1.10765 1.71614 1.21263 0.91723 0.85728 0.98257 0.91758 1.22001 1.02245 1.02462 0.93602 1.21139 0.93805 0.97138 0.85991 1.42550 1.05693 1.74981 1.15591 1.19641 0.88104 1.32842 0.97350 0.90103 1.25617 0.99343 1.02593 0.99134 1.69856 1.22651 1.51049 1.18583 0.85159 0.78676 0.78093 0.77480 1.20352 1.22378 1.20037 1.22110 0.93081 1.00784 0.99528 0.89375 0.90318 0.88335 0.80303 0.88584 0.92050 0.87769 0.75142 0.89445 0.91089 0.92854 0.94403 0.93746 0.79656 0.94154 0.83892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 10.06 71.24 0.72 -0.67 16 2 C -0.05 -0.98 5.91 -19.69 -0.12 -1.09 16 3 C -0.14 -2.79 9.45 22.44 0.21 -2.58 16 4 C 0.11 2.90 6.78 42.68 0.29 3.19 16 5 C -0.10 -1.93 10.17 71.24 0.72 -1.20 16 6 N -0.49 -16.31 9.45 -173.08 -1.64 -17.95 16 7 C 0.06 2.21 6.75 41.91 0.28 2.49 16 8 C 0.56 22.40 7.78 86.88 0.68 23.08 16 9 O -0.57 -24.78 15.99 -3.76 -0.06 -24.84 16 10 N -0.69 -26.45 4.51 -445.11 -2.01 -28.46 16 11 C 0.13 4.97 2.73 44.99 0.12 5.09 16 12 H 0.06 2.67 7.58 -2.39 -0.02 2.65 16 13 C -0.14 -4.10 9.48 71.98 0.68 -3.42 16 14 C 0.15 5.95 5.82 86.38 0.50 6.46 16 15 N -0.75 -39.32 5.43 -343.45 -1.87 -41.19 16 16 C -0.25 -14.10 9.99 84.04 0.84 -13.26 16 17 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 18 C -0.07 -4.39 5.50 84.86 0.47 -3.92 16 19 N -0.97 -61.52 13.06 21.65 0.28 -61.24 16 20 Si 0.98 46.83 29.55 68.60 2.03 48.86 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 22 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 23 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 24 C -0.13 -3.87 9.34 22.61 0.21 -3.66 16 25 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 26 H 0.08 0.92 8.10 -2.39 -0.02 0.90 16 27 H 0.10 0.74 8.10 -2.39 -0.02 0.72 16 28 H 0.18 1.89 8.06 -2.91 -0.02 1.87 16 29 H 0.10 1.45 8.14 -2.39 -0.02 1.44 16 30 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.10 1.33 8.08 -2.39 -0.02 1.32 16 32 H 0.41 16.15 7.93 -92.71 -0.74 15.41 16 33 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.07 1.81 8.14 -2.39 -0.02 1.80 16 35 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 38 H 0.37 21.56 7.33 -92.71 -0.68 20.88 16 39 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 40 H 0.14 4.05 7.64 -2.91 -0.02 4.03 16 Total: -1.00 -74.77 343.17 1.99 -72.78 By element: Atomic # 1 Polarization: 41.92 SS G_CDS: -0.37 Total: 41.55 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 5.61 Total: 10.49 kcal Atomic # 7 Polarization: -143.62 SS G_CDS: -5.23 Total: -148.84 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.06 Total: -24.84 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -74.77 1.99 -72.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669336535.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.263 kcal (2) G-P(sol) polarization free energy of solvation -74.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds