Wall clock time and date at job start Mon Mar 30 2020 02:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38177 * 120.49866 * 2 1 4 4 N 1.31794 * 120.89927 * 180.02562 * 3 2 1 5 5 C 1.31829 * 122.04743 * 359.97438 * 4 3 2 6 6 C 1.38134 * 120.89601 * 0.02562 * 5 4 3 7 7 C 1.39792 * 120.50534 * 180.02562 * 2 1 3 8 8 C 1.48151 * 120.92084 * 0.02562 * 7 2 1 9 9 O 1.21516 * 120.00111 * 311.33993 * 8 7 2 10 10 N 1.34776 * 119.99886 * 131.33978 * 8 7 2 11 11 C 1.46497 * 120.00527 * 4.33928 * 10 8 7 12 12 C 1.46507 * 119.99657 * 184.33607 * 10 8 7 13 13 C 1.53000 * 109.47161 * 90.00384 * 12 10 8 14 14 C 1.52995 * 109.47047 * 179.97438 * 13 12 10 15 15 N 1.46508 * 109.47180 * 179.97438 * 14 13 12 16 16 C 1.36928 * 119.99999 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00263 * 0.02562 * 16 15 14 18 18 C 1.38812 * 119.99976 * 180.02562 * 16 15 14 19 19 N 1.31619 * 119.99908 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00232 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46903 * 60.00096 * 20 18 16 22 22 H 1.48494 * 109.47431 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47398 * 300.00056 * 20 18 16 24 24 H 1.08995 * 109.47121 * 274.29195 * 1 2 3 25 25 H 1.08994 * 109.47737 * 34.30022 * 1 2 3 26 26 H 1.09001 * 109.46869 * 154.29616 * 1 2 3 27 27 H 1.08003 * 119.54584 * 0.04311 * 3 2 1 28 28 H 1.07999 * 119.55117 * 180.02562 * 5 4 3 29 29 H 1.07999 * 120.49588 * 179.97438 * 6 5 4 30 30 H 1.08993 * 109.47455 * 84.96712 * 11 10 8 31 31 H 1.09000 * 109.47309 * 204.97631 * 11 10 8 32 32 H 1.09005 * 109.46810 * 324.97082 * 11 10 8 33 33 H 1.09002 * 109.46946 * 209.99808 * 12 10 8 34 34 H 1.08996 * 109.47224 * 329.99670 * 12 10 8 35 35 H 1.09002 * 109.46721 * 299.99562 * 13 12 10 36 36 H 1.09002 * 109.47353 * 59.99263 * 13 12 10 37 37 H 1.09002 * 109.47082 * 299.99439 * 14 13 12 38 38 H 1.08997 * 109.47683 * 59.99960 * 14 13 12 39 39 H 0.97002 * 119.99610 * 359.97438 * 15 14 13 40 40 H 0.96998 * 120.00060 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2082 1.1906 0.0000 4 7 3.5261 1.1998 -0.0005 5 6 4.2334 0.0873 -0.0005 6 6 3.6137 -1.1472 -0.0006 7 6 2.2166 -1.2044 -0.0005 8 6 1.5080 -2.5055 -0.0017 9 8 0.6066 -2.7072 0.7879 10 7 1.8631 -3.4654 -0.8785 11 6 3.0104 -3.2591 -1.7658 12 6 1.1016 -4.7153 -0.9444 13 6 -0.0346 -4.5676 -1.9583 14 6 -0.8293 -5.8731 -2.0275 15 7 -1.9177 -5.7314 -2.9980 16 6 -2.7679 -6.7792 -3.2310 17 1 -2.6364 -7.7099 -2.6991 18 6 -3.7988 -6.6451 -4.1509 19 7 -3.9593 -5.5107 -4.7987 20 14 -4.9591 -8.0742 -4.4683 21 1 -5.6501 -8.4406 -3.2059 22 1 -5.9655 -7.6782 -5.4859 23 1 -4.1846 -9.2399 -4.9649 24 1 -0.3633 0.0769 1.0247 25 1 -0.3634 0.8489 -0.5791 26 1 -0.3633 -0.9260 -0.4457 27 1 1.6689 2.1263 0.0007 28 1 5.3120 0.1419 -0.0005 29 1 4.1995 -2.0545 -0.0010 30 1 3.9265 -3.5402 -1.2464 31 1 2.8951 -3.8745 -2.6580 32 1 3.0632 -2.2090 -2.0531 33 1 1.7609 -5.5266 -1.2532 34 1 0.6854 -4.9394 0.0378 35 1 -0.6939 -3.7564 -1.6494 36 1 0.3817 -4.3435 -2.9405 37 1 -0.1698 -6.6840 -2.3366 38 1 -1.2457 -6.0976 -1.0455 39 1 -2.0360 -4.8954 -3.4754 40 1 -4.6795 -5.4171 -5.4418 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670087610.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:42 Heat of formation + Delta-G solvation = 11.514206 kcal Electronic energy + Delta-G solvation = -20952.671436 eV Core-core repulsion = 17767.845139 eV Total energy + Delta-G solvation = -3184.826297 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.07242 -39.33658 -36.33228 -34.93092 -33.78622 -32.81780 -31.84039 -29.77739 -27.73417 -27.11247 -25.84498 -24.20760 -22.94367 -22.24598 -20.98850 -19.84119 -17.83206 -17.14302 -17.04382 -16.30151 -15.75024 -15.52970 -15.07351 -14.56817 -14.48181 -14.35308 -13.73308 -13.60215 -13.41084 -13.24014 -13.04250 -12.95637 -12.60935 -12.36512 -11.97850 -11.93283 -11.82413 -10.95657 -10.83918 -10.78857 -10.44473 -10.42660 -10.09450 -10.02090 -9.72142 -9.59486 -9.24588 -8.85754 -8.79637 -6.91286 -5.75019 -3.03928 0.57649 0.75252 2.47574 2.80044 3.45253 3.45753 3.49213 3.50585 4.06132 4.12461 4.45209 4.51467 4.60572 4.66444 4.87124 5.01088 5.10651 5.13860 5.29184 5.35495 5.41238 5.45945 5.50361 5.53049 5.57202 5.64873 5.80736 5.88224 6.01031 6.04242 6.26625 6.29906 6.36347 6.43129 6.83479 6.85681 7.15167 7.59462 7.70494 7.92845 8.43839 9.54632 10.12761 10.47413 11.47990 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031155 B = 0.003162 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.508126 B = 8852.587117 C = 9249.221299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.085 4.085 3 C 0.097 3.903 4 N -0.471 5.471 5 C 0.086 3.914 6 C -0.142 4.142 7 C -0.082 4.082 8 C 0.557 3.443 9 O -0.518 6.518 10 N -0.606 5.606 11 C 0.073 3.927 12 C 0.117 3.883 13 C -0.139 4.139 14 C 0.157 3.843 15 N -0.733 5.733 16 C -0.240 4.240 17 H 0.070 0.930 18 C -0.015 4.015 19 N -0.935 5.935 20 Si 0.909 3.091 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 H 0.083 0.917 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.162 0.838 28 H 0.160 0.840 29 H 0.142 0.858 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.019 0.981 38 H 0.021 0.979 39 H 0.383 0.617 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.721 11.251 8.854 23.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.088 4.088 3 C -0.061 4.061 4 N -0.179 5.179 5 C -0.070 4.070 6 C -0.162 4.162 7 C -0.093 4.093 8 C 0.344 3.656 9 O -0.393 6.393 10 N -0.339 5.339 11 C -0.070 4.070 12 C -0.005 4.005 13 C -0.178 4.178 14 C 0.028 3.972 15 N -0.377 5.377 16 C -0.371 4.371 17 H 0.088 0.912 18 C -0.211 4.211 19 N -0.583 5.583 20 Si 0.740 3.260 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.213 1.213 24 H 0.101 0.899 25 H 0.092 0.908 26 H 0.094 0.906 27 H 0.179 0.821 28 H 0.178 0.822 29 H 0.160 0.840 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.037 0.963 38 H 0.038 0.962 39 H 0.217 0.783 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 18.599 11.747 9.273 23.873 hybrid contribution -1.011 -1.335 -0.502 1.749 sum 17.588 10.412 8.771 22.241 Atomic orbital electron populations 1.20832 0.89126 1.03831 1.03524 1.21061 0.98240 0.92499 0.96985 1.22695 0.89733 0.97353 0.96287 1.67545 1.08267 1.31788 1.10328 1.22700 1.00476 0.87222 0.96616 1.22410 0.93641 1.00364 0.99759 1.20274 0.94113 0.93874 1.01063 1.18242 0.83008 0.83329 0.81007 1.90827 1.29872 1.80136 1.38510 1.47816 1.31269 1.17578 1.37222 1.21997 0.87769 1.02808 0.94396 1.21583 0.93519 0.83818 1.01542 1.22067 0.96873 1.00269 0.98593 1.20535 0.89884 0.93334 0.93400 1.42339 1.32360 1.15625 1.47419 1.19201 1.06460 0.93124 1.18358 0.91187 1.24754 0.99424 0.97302 0.99588 1.69654 1.34135 1.24442 1.30101 0.86243 0.80627 0.81645 0.77531 1.21232 1.21666 1.21262 0.89857 0.90793 0.90568 0.82085 0.82233 0.84048 0.92288 0.90133 0.91134 0.90107 0.89422 0.91654 0.91893 0.96342 0.96160 0.78327 0.93467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 9.25 36.00 0.33 -0.92 16 2 C -0.09 -0.93 5.93 -104.07 -0.62 -1.55 16 3 C 0.10 0.94 10.87 -17.59 -0.19 0.75 16 4 N -0.47 -4.81 10.33 -13.30 -0.14 -4.95 16 5 C 0.09 0.72 11.17 -17.59 -0.20 0.52 16 6 C -0.14 -1.21 7.90 -39.02 -0.31 -1.52 16 7 C -0.08 -0.93 4.92 -104.65 -0.51 -1.44 16 8 C 0.56 7.58 6.42 -12.19 -0.08 7.50 16 9 O -0.52 -8.88 15.25 5.35 0.08 -8.80 16 10 N -0.61 -7.20 2.87 -182.58 -0.52 -7.72 16 11 C 0.07 0.60 9.08 59.85 0.54 1.14 16 12 C 0.12 1.56 5.42 -4.04 -0.02 1.53 16 13 C -0.14 -2.31 5.65 -26.73 -0.15 -2.46 16 14 C 0.16 3.21 6.26 -4.04 -0.03 3.19 16 15 N -0.73 -19.24 5.60 -59.91 -0.34 -19.58 16 16 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 17 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 18 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 19 N -0.93 -28.80 13.06 55.49 0.72 -28.07 16 20 Si 0.91 22.73 29.55 -169.99 -5.02 17.70 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 26 H 0.08 1.01 6.58 -51.93 -0.34 0.67 16 27 H 0.16 1.15 8.06 -52.48 -0.42 0.73 16 28 H 0.16 0.84 8.06 -52.49 -0.42 0.41 16 29 H 0.14 0.88 6.38 -52.49 -0.33 0.55 16 30 H 0.06 0.35 7.11 -51.93 -0.37 -0.02 16 31 H 0.08 0.62 8.03 -51.93 -0.42 0.20 16 32 H 0.07 0.55 6.28 -51.93 -0.33 0.23 16 33 H 0.08 0.89 8.07 -51.93 -0.42 0.47 16 34 H 0.09 1.27 7.37 -51.93 -0.38 0.89 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.38 10.56 7.67 -40.82 -0.31 10.25 16 40 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 334.93 15.07 5.05 5.05 Total: -1.00 -34.69 334.93 -7.47 -42.16 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -5.83 Total: 5.05 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -1.47 Total: -0.85 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: -0.27 Total: -60.32 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.08 Total: -8.80 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.69 -7.47 -42.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670087610.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.678 kcal (2) G-P(sol) polarization free energy of solvation -34.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds