Wall clock time and date at job start Mon Mar 30 2020 01:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38400 * 120.85391 * 2 1 4 4 C 1.38306 * 119.30243 * 180.02562 * 3 2 1 5 5 N 1.31960 * 121.08084 * 359.97438 * 4 3 2 6 6 C 1.31664 * 121.88185 * 0.02562 * 5 4 3 7 7 C 1.39559 * 120.56609 * 0.27450 * 6 5 4 8 8 C 1.47837 * 120.56218 * 179.72369 * 7 6 5 9 9 O 1.21555 * 120.00127 * 186.30561 * 8 7 6 10 10 N 1.34774 * 120.00055 * 6.31088 * 8 7 6 11 11 C 1.46496 * 120.00192 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47443 * 179.97438 * 11 10 8 13 13 H 1.08999 * 109.47103 * 64.99323 * 12 11 10 14 14 C 1.52992 * 109.47307 * 184.99874 * 12 11 10 15 15 N 1.46505 * 109.47024 * 305.00125 * 12 11 10 16 16 C 1.46503 * 119.99660 * 300.00091 * 15 12 11 17 17 C 1.36931 * 119.99998 * 119.99795 * 15 12 11 18 18 H 1.07992 * 120.00687 * 24.60128 * 17 15 12 19 19 C 1.38816 * 119.99749 * 204.59808 * 17 15 12 20 20 N 1.31620 * 120.00241 * 13.53361 * 19 17 15 21 21 Si 1.86798 * 120.00038 * 193.53508 * 19 17 15 22 22 H 1.48504 * 109.47134 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47351 * 120.00091 * 21 19 17 24 24 H 1.48496 * 109.47445 * 240.00085 * 21 19 17 25 25 H 1.08997 * 109.47318 * 96.14534 * 1 2 3 26 26 H 1.08995 * 109.46730 * 216.14750 * 1 2 3 27 27 H 1.09001 * 109.47039 * 336.14421 * 1 2 3 28 28 H 1.07995 * 120.34688 * 0.02562 * 3 2 1 29 29 H 1.08000 * 119.46416 * 180.02562 * 4 3 2 30 30 H 1.08000 * 119.71615 * 179.97438 * 6 5 4 31 31 H 0.96997 * 119.99719 * 359.97438 * 10 8 7 32 32 H 1.08997 * 109.46999 * 299.99887 * 11 10 8 33 33 H 1.08997 * 109.47434 * 59.99557 * 11 10 8 34 34 H 1.09005 * 109.46984 * 179.97438 * 14 12 11 35 35 H 1.09001 * 109.47673 * 299.99716 * 14 12 11 36 36 H 1.08997 * 109.47212 * 60.00149 * 14 12 11 37 37 H 1.08995 * 109.47302 * 94.44157 * 16 15 12 38 38 H 1.08998 * 109.46589 * 214.44831 * 16 15 12 39 39 H 1.08999 * 109.46913 * 334.43905 * 16 15 12 40 40 H 0.96999 * 120.00138 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5994 1.1507 -0.0005 5 7 4.2498 0.0025 -0.0005 6 6 3.6197 -1.1536 -0.0005 7 6 2.2250 -1.2018 -0.0063 8 6 1.5177 -2.4999 -0.0124 9 8 0.3086 -2.5328 -0.1330 10 7 2.2134 -3.6471 0.1158 11 6 1.5126 -4.9335 0.1091 12 6 2.5270 -6.0678 0.2684 13 1 2.9965 -6.0002 1.2498 14 6 1.8118 -7.4138 0.1368 15 7 3.5522 -5.9557 -0.7721 16 6 3.1713 -6.0173 -2.1854 17 6 4.8665 -5.7933 -0.4237 18 1 5.2155 -6.1326 0.5403 19 6 5.7503 -5.1925 -1.3096 20 7 5.2912 -4.5440 -2.3589 21 14 7.5911 -5.3045 -1.0127 22 1 7.8463 -6.0829 0.2260 23 1 8.2381 -5.9823 -2.1648 24 1 8.1525 -3.9379 -0.8636 25 1 -0.3634 -0.1100 -1.0217 26 1 -0.3632 -0.8298 0.6062 27 1 -0.3633 0.9399 0.4156 28 1 1.6966 2.1345 0.0004 29 1 4.1559 2.0763 -0.0001 30 1 4.1872 -2.0725 -0.0010 31 1 3.1783 -3.6209 0.2117 32 1 0.8008 -4.9637 0.9340 33 1 0.9803 -5.0525 -0.8345 34 1 2.5346 -8.2219 0.2498 35 1 1.0490 -7.4973 0.9110 36 1 1.3423 -7.4814 -0.8446 37 1 3.0304 -5.0066 -2.5682 38 1 3.9584 -6.5143 -2.7524 39 1 2.2416 -6.5772 -2.2870 40 1 5.9088 -4.1238 -2.9778 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674907794.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:23 Heat of formation + Delta-G solvation = 18.843492 kcal Electronic energy + Delta-G solvation = -22096.501145 eV Core-core repulsion = 18911.992670 eV Total energy + Delta-G solvation = -3184.508475 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.43353 -38.61996 -36.72385 -34.07538 -33.33765 -32.28932 -31.05880 -29.33381 -27.85326 -26.05279 -25.76738 -23.92388 -23.05112 -21.91012 -20.16548 -19.33057 -17.30031 -16.92867 -16.47037 -16.03759 -15.34157 -15.02724 -14.86415 -14.51675 -14.09181 -13.54932 -13.45951 -12.83660 -12.70469 -12.66972 -12.53874 -12.44680 -12.13124 -12.04867 -11.77988 -11.60940 -11.12081 -10.82399 -10.71552 -10.45342 -10.29508 -9.90502 -9.79700 -9.71724 -9.39745 -9.05950 -9.03430 -8.62732 -8.37412 -6.82306 -5.79171 -3.28907 0.87759 1.34913 3.24525 3.34781 3.43488 3.44795 3.71223 4.06879 4.43335 4.54736 4.78960 4.86195 5.07051 5.24342 5.33662 5.36977 5.50657 5.57229 5.66885 5.79597 5.84719 5.93767 6.00422 6.06589 6.11921 6.21030 6.31119 6.36727 6.53163 6.67241 6.75884 6.77738 6.87516 7.08546 7.33125 7.70556 7.75289 8.05762 8.14528 8.32630 8.71207 9.16123 9.78901 10.29566 11.23114 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015021 B = 0.006796 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.656114 B = 4119.344357 C = 5594.730957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.013 3.987 3 C -0.194 4.194 4 C 0.117 3.883 5 N -0.492 5.492 6 C 0.152 3.848 7 C -0.187 4.187 8 C 0.558 3.442 9 O -0.554 6.554 10 N -0.692 5.692 11 C 0.108 3.892 12 C 0.156 3.844 13 H 0.069 0.931 14 C -0.158 4.158 15 N -0.593 5.593 16 C 0.161 3.839 17 C -0.266 4.266 18 H 0.067 0.933 19 C 0.009 3.991 20 N -0.897 5.897 21 Si 0.898 3.102 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.288 1.288 25 H 0.079 0.921 26 H 0.098 0.902 27 H 0.058 0.942 28 H 0.136 0.864 29 H 0.156 0.844 30 H 0.169 0.831 31 H 0.414 0.586 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.045 0.955 36 H 0.051 0.949 37 H 0.031 0.969 38 H 0.038 0.962 39 H 0.000 1.000 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.024 6.970 5.221 11.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.004 3.996 3 C -0.213 4.213 4 C -0.039 4.039 5 N -0.201 5.201 6 C -0.006 4.006 7 C -0.192 4.192 8 C 0.344 3.656 9 O -0.435 6.435 10 N -0.342 5.342 11 C -0.018 4.018 12 C 0.048 3.952 13 H 0.087 0.913 14 C -0.217 4.217 15 N -0.316 5.316 16 C 0.016 3.984 17 C -0.395 4.395 18 H 0.085 0.915 19 C -0.191 4.191 20 N -0.541 5.541 21 Si 0.728 3.272 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.215 1.215 25 H 0.097 0.903 26 H 0.116 0.884 27 H 0.077 0.923 28 H 0.154 0.846 29 H 0.173 0.827 30 H 0.186 0.814 31 H 0.253 0.747 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.049 0.951 38 H 0.057 0.943 39 H 0.019 0.981 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.837 6.989 4.989 10.976 hybrid contribution 0.734 0.042 -0.140 0.748 sum -6.103 7.030 4.849 10.497 Atomic orbital electron populations 1.21038 0.89400 1.03040 1.03972 1.20461 0.97347 0.91433 0.90368 1.21983 0.95584 0.98390 1.05385 1.22942 0.91700 0.96527 0.92779 1.67755 1.40843 0.98262 1.13196 1.23280 0.90674 0.96829 0.89836 1.20975 0.95303 0.94568 1.08403 1.17956 0.86774 0.83707 0.77145 1.90657 1.13763 1.87450 1.51618 1.45794 1.12193 1.05062 1.71201 1.21975 0.95418 0.83593 1.00820 1.20672 0.89314 0.91281 0.93958 0.91279 1.22162 0.99935 0.98757 1.00860 1.43932 1.02471 1.84721 1.00470 1.20751 0.94736 0.98531 0.84336 1.19225 0.84192 1.33437 1.02653 0.91485 1.25025 0.98170 0.97619 0.98257 1.70067 1.33012 1.35942 1.15038 0.86292 0.85888 0.77443 0.77553 1.20379 1.21717 1.21520 0.90251 0.88367 0.92309 0.84591 0.82691 0.81447 0.74745 0.92702 0.92236 0.92410 0.93560 0.92961 0.95102 0.94336 0.98148 0.93663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.57 8.83 36.01 0.32 -1.25 16 2 C 0.01 0.19 5.95 -103.90 -0.62 -0.43 16 3 C -0.19 -2.42 9.78 -39.50 -0.39 -2.80 16 4 C 0.12 1.57 11.17 -17.47 -0.20 1.37 16 5 N -0.49 -8.34 10.35 -12.91 -0.13 -8.47 16 6 C 0.15 2.70 10.70 -17.13 -0.18 2.52 16 7 C -0.19 -3.25 5.89 -104.82 -0.62 -3.86 16 8 C 0.56 10.56 7.72 -12.33 -0.10 10.47 16 9 O -0.55 -11.15 13.52 5.32 0.07 -11.07 16 10 N -0.69 -13.16 5.34 -61.26 -0.33 -13.49 16 11 C 0.11 1.96 4.97 -4.04 -0.02 1.94 16 12 C 0.16 2.91 2.87 -67.93 -0.19 2.72 16 13 H 0.07 1.28 7.87 -51.93 -0.41 0.87 16 14 C -0.16 -2.53 9.18 37.15 0.34 -2.19 16 15 N -0.59 -13.36 2.28 -173.49 -0.40 -13.76 16 16 C 0.16 3.75 8.12 59.85 0.49 4.24 16 17 C -0.27 -6.59 9.29 -15.06 -0.14 -6.73 16 18 H 0.07 1.65 7.84 -52.49 -0.41 1.24 16 19 C 0.01 0.23 5.08 -17.43 -0.09 0.14 16 20 N -0.90 -24.19 10.84 55.49 0.60 -23.59 16 21 Si 0.90 20.79 29.57 -169.99 -5.03 15.76 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.10 1.48 5.98 -51.93 -0.31 1.17 16 27 H 0.06 0.60 8.07 -51.93 -0.42 0.18 16 28 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 29 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.17 3.16 6.47 -52.49 -0.34 2.82 16 31 H 0.41 8.29 6.00 -40.82 -0.24 8.04 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.06 1.16 7.84 -51.93 -0.41 0.75 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.85 6.66 -51.93 -0.35 0.50 16 37 H 0.03 0.79 7.34 -51.93 -0.38 0.41 16 38 H 0.04 0.97 7.42 -51.93 -0.39 0.59 16 39 H 0.00 0.00 6.43 -51.93 -0.33 -0.33 16 40 H 0.25 6.79 8.31 -40.82 -0.34 6.46 16 LS Contribution 327.70 15.07 4.94 4.94 Total: -1.00 -28.57 327.70 -7.32 -35.89 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -5.66 Total: 7.66 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: -1.39 Total: 6.13 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: -0.25 Total: -59.31 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.07 Total: -11.07 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.57 -7.32 -35.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674907794.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.738 kcal (2) G-P(sol) polarization free energy of solvation -28.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds