Wall clock time and date at job start Mon Mar 30 2020 01:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38400 * 120.85391 * 2 1 4 4 C 1.38306 * 119.30243 * 180.02562 * 3 2 1 5 5 N 1.31960 * 121.08084 * 359.97438 * 4 3 2 6 6 C 1.31664 * 121.88185 * 0.02562 * 5 4 3 7 7 C 1.39559 * 120.56609 * 0.27450 * 6 5 4 8 8 C 1.47837 * 120.56218 * 179.72369 * 7 6 5 9 9 O 1.21555 * 120.00127 * 186.30561 * 8 7 6 10 10 N 1.34774 * 120.00055 * 6.31088 * 8 7 6 11 11 C 1.46496 * 120.00192 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47443 * 179.97438 * 11 10 8 13 13 H 1.08999 * 109.47103 * 64.99323 * 12 11 10 14 14 C 1.52992 * 109.47307 * 184.99874 * 12 11 10 15 15 N 1.46505 * 109.47024 * 305.00125 * 12 11 10 16 16 C 1.46503 * 119.99660 * 300.00091 * 15 12 11 17 17 C 1.36931 * 119.99998 * 119.99795 * 15 12 11 18 18 H 1.07992 * 120.00687 * 24.60128 * 17 15 12 19 19 C 1.38816 * 119.99749 * 204.59808 * 17 15 12 20 20 N 1.31620 * 120.00241 * 13.53361 * 19 17 15 21 21 Si 1.86798 * 120.00038 * 193.53508 * 19 17 15 22 22 H 1.48504 * 109.47134 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47351 * 120.00091 * 21 19 17 24 24 H 1.48496 * 109.47445 * 240.00085 * 21 19 17 25 25 H 1.08997 * 109.47318 * 96.14534 * 1 2 3 26 26 H 1.08995 * 109.46730 * 216.14750 * 1 2 3 27 27 H 1.09001 * 109.47039 * 336.14421 * 1 2 3 28 28 H 1.07995 * 120.34688 * 0.02562 * 3 2 1 29 29 H 1.08000 * 119.46416 * 180.02562 * 4 3 2 30 30 H 1.08000 * 119.71615 * 179.97438 * 6 5 4 31 31 H 0.96997 * 119.99719 * 359.97438 * 10 8 7 32 32 H 1.08997 * 109.46999 * 299.99887 * 11 10 8 33 33 H 1.08997 * 109.47434 * 59.99557 * 11 10 8 34 34 H 1.09005 * 109.46984 * 179.97438 * 14 12 11 35 35 H 1.09001 * 109.47673 * 299.99716 * 14 12 11 36 36 H 1.08997 * 109.47212 * 60.00149 * 14 12 11 37 37 H 1.08995 * 109.47302 * 94.44157 * 16 15 12 38 38 H 1.08998 * 109.46589 * 214.44831 * 16 15 12 39 39 H 1.08999 * 109.46913 * 334.43905 * 16 15 12 40 40 H 0.96999 * 120.00138 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5994 1.1507 -0.0005 5 7 4.2498 0.0025 -0.0005 6 6 3.6197 -1.1536 -0.0005 7 6 2.2250 -1.2018 -0.0063 8 6 1.5177 -2.4999 -0.0124 9 8 0.3086 -2.5328 -0.1330 10 7 2.2134 -3.6471 0.1158 11 6 1.5126 -4.9335 0.1091 12 6 2.5270 -6.0678 0.2684 13 1 2.9965 -6.0002 1.2498 14 6 1.8118 -7.4138 0.1368 15 7 3.5522 -5.9557 -0.7721 16 6 3.1713 -6.0173 -2.1854 17 6 4.8665 -5.7933 -0.4237 18 1 5.2155 -6.1326 0.5403 19 6 5.7503 -5.1925 -1.3096 20 7 5.2912 -4.5440 -2.3589 21 14 7.5911 -5.3045 -1.0127 22 1 7.8463 -6.0829 0.2260 23 1 8.2381 -5.9823 -2.1648 24 1 8.1525 -3.9379 -0.8636 25 1 -0.3634 -0.1100 -1.0217 26 1 -0.3632 -0.8298 0.6062 27 1 -0.3633 0.9399 0.4156 28 1 1.6966 2.1345 0.0004 29 1 4.1559 2.0763 -0.0001 30 1 4.1872 -2.0725 -0.0010 31 1 3.1783 -3.6209 0.2117 32 1 0.8008 -4.9637 0.9340 33 1 0.9803 -5.0525 -0.8345 34 1 2.5346 -8.2219 0.2498 35 1 1.0490 -7.4973 0.9110 36 1 1.3423 -7.4814 -0.8446 37 1 3.0304 -5.0066 -2.5682 38 1 3.9584 -6.5143 -2.7524 39 1 2.2416 -6.5772 -2.2870 40 1 5.9088 -4.1238 -2.9778 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674907794.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:23 Heat of formation + Delta-G solvation = 1.326441 kcal Electronic energy + Delta-G solvation = -22097.260742 eV Core-core repulsion = 18911.992670 eV Total energy + Delta-G solvation = -3185.268072 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.70263 -40.01869 -38.36924 -35.58452 -34.65755 -33.93297 -32.37498 -31.04035 -28.98401 -27.98264 -27.13074 -25.25601 -24.78117 -23.10388 -21.57464 -20.93356 -18.85107 -18.63592 -17.75412 -17.21572 -17.04960 -16.49600 -16.35791 -15.80223 -15.74096 -14.94740 -14.88085 -14.55671 -14.32310 -13.89837 -13.74793 -13.66729 -13.56458 -13.39635 -13.19656 -12.93711 -12.82209 -12.61599 -12.45685 -12.28161 -12.05603 -11.74588 -11.45939 -11.01738 -10.61002 -10.59717 -10.35203 -10.22755 -9.86012 -8.73374 -7.76956 -5.27005 -0.33444 0.19044 1.47593 1.52276 1.59232 1.86950 2.30189 2.53511 2.82821 3.36402 3.36868 3.65377 3.69748 3.74900 3.88501 4.03402 4.08891 4.41029 4.46200 4.60131 4.63191 4.70124 4.72548 4.78931 4.84226 4.86168 4.86694 5.10147 5.15625 5.28463 5.29630 5.38452 5.49169 5.61928 5.66470 5.72688 5.74802 6.37320 6.60685 6.89143 7.19207 7.21568 7.90696 8.36983 9.23389 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015021 B = 0.006796 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.656114 B = 4119.344357 C = 5594.730957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.003 3.997 3 C -0.174 4.174 4 C 0.117 3.883 5 N -0.519 5.519 6 C 0.137 3.863 7 C -0.208 4.208 8 C 0.554 3.446 9 O -0.570 6.570 10 N -0.698 5.698 11 C 0.114 3.886 12 C 0.154 3.846 13 H 0.073 0.927 14 C -0.148 4.148 15 N -0.601 5.601 16 C 0.180 3.820 17 C -0.260 4.260 18 H 0.071 0.929 19 C -0.037 4.037 20 N -0.923 5.923 21 Si 0.952 3.048 22 H -0.268 1.268 23 H -0.299 1.299 24 H -0.296 1.296 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.183 0.817 29 H 0.196 0.804 30 H 0.143 0.857 31 H 0.408 0.592 32 H 0.074 0.926 33 H 0.045 0.955 34 H 0.053 0.947 35 H 0.077 0.923 36 H 0.048 0.952 37 H 0.000 1.000 38 H 0.011 0.989 39 H 0.026 0.974 40 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.943 8.332 6.445 13.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.005 4.005 3 C -0.193 4.193 4 C -0.038 4.038 5 N -0.229 5.229 6 C -0.021 4.021 7 C -0.213 4.213 8 C 0.342 3.658 9 O -0.453 6.453 10 N -0.347 5.347 11 C -0.012 4.012 12 C 0.047 3.953 13 H 0.091 0.909 14 C -0.207 4.207 15 N -0.324 5.324 16 C 0.035 3.965 17 C -0.390 4.390 18 H 0.089 0.911 19 C -0.233 4.233 20 N -0.569 5.569 21 Si 0.782 3.218 22 H -0.192 1.192 23 H -0.227 1.227 24 H -0.224 1.224 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.115 0.885 28 H 0.200 0.800 29 H 0.213 0.787 30 H 0.160 0.840 31 H 0.245 0.755 32 H 0.092 0.908 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.068 0.932 37 H 0.019 0.981 38 H 0.030 0.970 39 H 0.044 0.956 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -7.777 8.323 6.248 12.992 hybrid contribution 0.966 -0.309 -0.473 1.119 sum -6.812 8.014 5.775 11.999 Atomic orbital electron populations 1.20995 0.88207 1.04167 1.03475 1.20819 0.98327 0.91370 0.90007 1.22439 0.95197 0.99210 1.02436 1.23671 0.92738 0.96572 0.90864 1.67727 1.41886 0.98999 1.14277 1.22923 0.90809 0.96713 0.91619 1.20929 0.95173 0.94799 1.10412 1.18274 0.86689 0.84307 0.76543 1.90639 1.14290 1.87817 1.52508 1.45889 1.11879 1.05605 1.71365 1.21927 0.95346 0.83134 1.00758 1.20875 0.88739 0.92859 0.92808 0.90905 1.22046 1.00279 0.96495 1.01871 1.44051 1.02797 1.84606 1.00922 1.20416 0.94791 0.96730 0.84605 1.19464 0.85306 1.31892 1.02336 0.91101 1.25579 1.01108 0.98112 0.98535 1.70217 1.33397 1.37331 1.15912 0.85437 0.82320 0.76742 0.77303 1.19203 1.22670 1.22361 0.90729 0.90548 0.88547 0.79962 0.78692 0.83976 0.75479 0.90751 0.93689 0.92755 0.90382 0.93248 0.98129 0.97044 0.95581 0.94638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.75 8.83 71.24 0.63 -2.12 16 2 C 0.00 0.09 5.95 -19.40 -0.12 -0.02 16 3 C -0.17 -3.71 9.78 22.32 0.22 -3.49 16 4 C 0.12 2.82 11.17 84.69 0.95 3.77 16 5 N -0.52 -17.41 10.35 -194.76 -2.01 -19.43 16 6 C 0.14 5.04 10.70 85.04 0.91 5.95 16 7 C -0.21 -7.29 5.89 -19.99 -0.12 -7.40 16 8 C 0.55 21.47 7.72 86.78 0.67 22.14 16 9 O -0.57 -23.18 13.52 -3.89 -0.05 -23.23 16 10 N -0.70 -27.25 5.34 -466.00 -2.49 -29.74 16 11 C 0.11 4.11 4.97 86.38 0.43 4.54 16 12 C 0.15 5.62 2.87 44.99 0.13 5.75 16 13 H 0.07 2.61 7.87 -2.39 -0.02 2.59 16 14 C -0.15 -4.45 9.18 71.98 0.66 -3.78 16 15 N -0.60 -27.26 2.28 -702.80 -1.60 -28.86 16 16 C 0.18 8.56 8.12 127.77 1.04 9.60 16 17 C -0.26 -13.00 9.29 84.04 0.78 -12.22 16 18 H 0.07 3.46 7.84 -2.91 -0.02 3.44 16 19 C -0.04 -1.93 5.08 84.86 0.43 -1.49 16 20 N -0.92 -51.64 10.84 21.65 0.23 -51.41 16 21 Si 0.95 43.59 29.57 68.60 2.03 45.62 16 22 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 23 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 24 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 25 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.08 2.24 5.98 -2.39 -0.01 2.23 16 27 H 0.10 1.60 8.07 -2.39 -0.02 1.58 16 28 H 0.18 2.20 8.06 -2.91 -0.02 2.18 16 29 H 0.20 2.99 8.06 -2.91 -0.02 2.97 16 30 H 0.14 5.80 6.47 -2.91 -0.02 5.78 16 31 H 0.41 17.06 6.00 -92.71 -0.56 16.50 16 32 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.04 1.75 7.84 -2.39 -0.02 1.73 16 34 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.05 1.51 6.66 -2.39 -0.02 1.50 16 37 H 0.00 0.02 7.34 -2.39 -0.02 0.01 16 38 H 0.01 0.57 7.42 -2.39 -0.02 0.55 16 39 H 0.03 1.08 6.43 -2.39 -0.02 1.06 16 40 H 0.24 13.66 8.31 -92.71 -0.77 12.89 16 Total: -1.00 -63.67 327.70 3.20 -60.47 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: 0.49 Total: 25.37 kcal Atomic # 6 Polarization: 14.60 SS G_CDS: 6.61 Total: 21.21 kcal Atomic # 7 Polarization: -123.57 SS G_CDS: -5.87 Total: -129.44 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.05 Total: -23.23 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -63.67 3.20 -60.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674907794.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.793 kcal (2) G-P(sol) polarization free energy of solvation -63.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds