Wall clock time and date at job start Mon Mar 30 2020 01:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38403 * 120.85335 * 2 1 4 4 C 1.38302 * 119.30140 * 179.97438 * 3 2 1 5 5 N 1.31960 * 121.08489 * 0.02562 * 4 3 2 6 6 C 1.31665 * 121.87446 * 359.68487 * 5 4 3 7 7 C 1.39556 * 120.56918 * 0.57966 * 6 5 4 8 8 C 1.47843 * 120.56005 * 179.72591 * 7 6 5 9 9 O 1.21556 * 119.99814 * 173.63829 * 8 7 6 10 10 N 1.34771 * 120.00034 * 353.64697 * 8 7 6 11 11 C 1.46502 * 120.00039 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47279 * 179.97438 * 11 10 8 13 13 H 1.09000 * 109.47037 * 295.00033 * 12 11 10 14 14 C 1.52997 * 109.47183 * 175.00458 * 12 11 10 15 15 N 1.46494 * 109.46821 * 54.99861 * 12 11 10 16 16 C 1.46501 * 120.00204 * 60.00464 * 15 12 11 17 17 C 1.36940 * 120.00183 * 239.99781 * 15 12 11 18 18 H 1.07999 * 120.00064 * 24.42308 * 17 15 12 19 19 C 1.38808 * 120.00036 * 204.42345 * 17 15 12 20 20 N 1.31620 * 119.99946 * 13.47426 * 19 17 15 21 21 Si 1.86804 * 119.99923 * 193.47665 * 19 17 15 22 22 H 1.48492 * 109.47271 * 59.99821 * 21 19 17 23 23 H 1.48501 * 109.46852 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46681 * 299.99574 * 21 19 17 25 25 H 1.09003 * 109.47240 * 263.84413 * 1 2 3 26 26 H 1.08997 * 109.47047 * 23.84742 * 1 2 3 27 27 H 1.09004 * 109.46674 * 143.85150 * 1 2 3 28 28 H 1.07997 * 120.34464 * 359.94865 * 3 2 1 29 29 H 1.08004 * 119.45721 * 180.02562 * 4 3 2 30 30 H 1.07999 * 119.71268 * 180.31116 * 6 5 4 31 31 H 0.97003 * 119.99844 * 359.97438 * 10 8 7 32 32 H 1.09004 * 109.46647 * 59.99910 * 11 10 8 33 33 H 1.08997 * 109.46924 * 300.00125 * 11 10 8 34 34 H 1.08990 * 109.47227 * 180.02562 * 14 12 11 35 35 H 1.09010 * 109.46650 * 300.00277 * 14 12 11 36 36 H 1.09000 * 109.47413 * 59.99453 * 14 12 11 37 37 H 1.08996 * 109.47425 * 94.37607 * 16 15 12 38 38 H 1.08993 * 109.47666 * 214.38314 * 16 15 12 39 39 H 1.09000 * 109.46839 * 334.38025 * 16 15 12 40 40 H 0.97001 * 119.99635 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2168 1.1882 0.0000 4 6 3.5994 1.1507 0.0005 5 7 4.2498 0.0026 0.0005 6 6 3.6197 -1.1535 0.0062 7 6 2.2250 -1.2017 0.0003 8 6 1.5177 -2.5000 0.0005 9 8 0.3077 -2.5328 0.1120 10 7 2.2145 -3.6470 -0.1227 11 6 1.5137 -4.9335 -0.1219 12 6 2.5292 -6.0676 -0.2749 13 1 3.0054 -5.9993 -1.2530 14 6 1.8131 -7.4138 -0.1494 15 7 3.5471 -5.9562 0.7727 16 6 3.1565 -6.0190 2.1833 17 6 4.8638 -5.7935 0.4335 18 1 5.1262 -5.3618 -0.5210 19 6 5.8613 -6.1835 1.3165 20 7 5.5652 -6.9424 2.3503 21 14 7.6239 -5.6311 1.0377 22 1 7.6868 -4.1477 1.0578 23 1 8.4900 -6.1785 2.1126 24 1 8.0960 -6.1289 -0.2793 25 1 -0.3634 -0.1102 1.0218 26 1 -0.3633 0.9399 -0.4155 27 1 -0.3633 -0.8299 -0.6062 28 1 1.6965 2.1345 -0.0008 29 1 4.1558 2.0764 0.0010 30 1 4.1872 -2.0724 0.0111 31 1 3.1800 -3.6207 -0.2119 32 1 0.8082 -4.9634 -0.9523 33 1 0.9742 -5.0527 0.8177 34 1 2.5366 -8.2217 -0.2580 35 1 1.3367 -7.4821 0.8287 36 1 1.0557 -7.4966 -0.9289 37 1 3.2575 -7.0429 2.5430 38 1 3.8010 -5.3631 2.7684 39 1 2.1202 -5.6978 2.2879 40 1 6.2622 -7.2146 2.9676 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674907795.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:25 Heat of formation + Delta-G solvation = 0.681156 kcal Electronic energy + Delta-G solvation = -21851.887504 eV Core-core repulsion = 18666.591451 eV Total energy + Delta-G solvation = -3185.296053 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.72625 -40.04916 -38.38829 -35.64363 -34.66927 -33.91239 -32.37999 -31.09643 -28.99609 -28.00773 -27.15346 -25.26645 -24.81120 -23.11835 -21.62835 -20.95310 -18.93350 -18.60750 -17.74956 -17.22342 -17.12981 -16.49026 -16.34220 -15.84592 -15.78487 -14.93953 -14.93346 -14.53017 -14.40826 -13.93865 -13.76018 -13.68609 -13.54994 -13.36197 -13.04952 -12.95586 -12.82891 -12.63040 -12.49823 -12.32279 -12.12265 -11.79590 -11.50571 -11.03769 -10.61227 -10.60003 -10.36375 -10.24152 -9.90639 -8.75363 -7.79278 -5.28689 -0.35057 0.18218 1.49799 1.52547 1.56935 1.85232 2.23467 2.52982 2.81824 3.34714 3.35983 3.63465 3.68206 3.73867 3.86305 4.01628 4.07308 4.36999 4.45041 4.58500 4.61030 4.70371 4.72195 4.77028 4.79343 4.85900 4.93469 5.04502 5.16069 5.23030 5.32928 5.39193 5.44504 5.57714 5.64948 5.69808 5.73542 6.36124 6.56611 6.87337 7.16205 7.20183 7.89086 8.35350 9.23654 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016033 B = 0.005954 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.021683 B = 4701.233574 C = 6094.696145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.004 3.996 3 C -0.174 4.174 4 C 0.119 3.881 5 N -0.518 5.518 6 C 0.132 3.868 7 C -0.207 4.207 8 C 0.556 3.444 9 O -0.567 6.567 10 N -0.702 5.702 11 C 0.117 3.883 12 C 0.155 3.845 13 H 0.074 0.926 14 C -0.147 4.147 15 N -0.601 5.601 16 C 0.183 3.817 17 C -0.260 4.260 18 H 0.079 0.921 19 C -0.046 4.046 20 N -0.936 5.936 21 Si 0.958 3.042 22 H -0.277 1.277 23 H -0.302 1.302 24 H -0.276 1.276 25 H 0.075 0.925 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.180 0.820 29 H 0.195 0.805 30 H 0.154 0.846 31 H 0.408 0.592 32 H 0.078 0.922 33 H 0.051 0.949 34 H 0.040 0.960 35 H 0.043 0.957 36 H 0.077 0.923 37 H 0.003 0.997 38 H 0.010 0.990 39 H 0.020 0.980 40 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.417 14.564 -6.512 18.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.004 4.004 3 C -0.193 4.193 4 C -0.037 4.037 5 N -0.227 5.227 6 C -0.026 4.026 7 C -0.213 4.213 8 C 0.343 3.657 9 O -0.449 6.449 10 N -0.352 5.352 11 C -0.008 4.008 12 C 0.048 3.952 13 H 0.092 0.908 14 C -0.207 4.207 15 N -0.324 5.324 16 C 0.038 3.962 17 C -0.390 4.390 18 H 0.097 0.903 19 C -0.242 4.242 20 N -0.582 5.582 21 Si 0.787 3.213 22 H -0.203 1.203 23 H -0.229 1.229 24 H -0.201 1.201 25 H 0.094 0.906 26 H 0.112 0.888 27 H 0.095 0.905 28 H 0.197 0.803 29 H 0.212 0.788 30 H 0.171 0.829 31 H 0.245 0.755 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.096 0.904 37 H 0.021 0.979 38 H 0.029 0.971 39 H 0.039 0.961 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -8.242 14.441 -6.318 17.787 hybrid contribution 0.852 -0.483 0.421 1.066 sum -7.390 13.958 -5.898 16.859 Atomic orbital electron populations 1.21019 0.88431 1.04141 1.03540 1.20800 0.98216 0.91506 0.89879 1.22436 0.95291 0.99209 1.02362 1.23643 0.92616 0.96679 0.90725 1.67752 1.41754 0.99000 1.14212 1.23053 0.90655 0.97020 0.91855 1.20898 0.95311 0.94488 1.10563 1.18288 0.86720 0.84180 0.76484 1.90667 1.14374 1.87705 1.52121 1.45884 1.11715 1.05531 1.72044 1.21829 0.95150 0.82547 1.01274 1.20812 0.89107 0.92583 0.92742 0.90764 1.22059 0.99940 0.97173 1.01516 1.44089 1.02754 1.84743 1.00839 1.20369 0.93612 0.97541 0.84669 1.19504 0.82677 1.33597 1.03178 0.90340 1.25719 1.01221 0.98468 0.98791 1.70217 1.32687 1.38182 1.17110 0.85481 0.80808 0.78156 0.76850 1.20319 1.22899 1.20129 0.90611 0.88804 0.90481 0.80262 0.78809 0.82901 0.75527 0.90377 0.93095 0.94091 0.93736 0.90406 0.97913 0.97115 0.96111 0.94554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.48 8.85 71.24 0.63 -1.85 16 2 C 0.00 0.11 5.95 -19.40 -0.12 -0.01 16 3 C -0.17 -3.09 9.78 22.32 0.22 -2.87 16 4 C 0.12 2.36 11.17 84.69 0.95 3.31 16 5 N -0.52 -14.50 10.35 -194.76 -2.02 -16.52 16 6 C 0.13 3.97 10.70 85.04 0.91 4.88 16 7 C -0.21 -6.15 5.89 -19.99 -0.12 -6.27 16 8 C 0.56 18.70 7.72 86.79 0.67 19.37 16 9 O -0.57 -20.80 13.50 -3.89 -0.05 -20.86 16 10 N -0.70 -23.72 5.34 -465.97 -2.49 -26.21 16 11 C 0.12 3.92 4.93 86.38 0.43 4.35 16 12 C 0.15 5.67 2.87 44.99 0.13 5.80 16 13 H 0.07 2.66 7.87 -2.39 -0.02 2.64 16 14 C -0.15 -4.93 9.19 71.98 0.66 -4.27 16 15 N -0.60 -27.53 2.28 -702.81 -1.60 -29.13 16 16 C 0.18 8.85 8.02 127.77 1.02 9.87 16 17 C -0.26 -13.06 9.29 84.03 0.78 -12.28 16 18 H 0.08 3.72 7.84 -2.91 -0.02 3.70 16 19 C -0.05 -2.48 5.08 84.86 0.43 -2.05 16 20 N -0.94 -54.16 10.83 21.65 0.23 -53.93 16 21 Si 0.96 43.74 29.57 68.60 2.03 45.77 16 22 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 23 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 24 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 25 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.09 1.35 8.07 -2.39 -0.02 1.33 16 27 H 0.08 2.04 5.95 -2.38 -0.01 2.03 16 28 H 0.18 1.68 8.06 -2.91 -0.02 1.66 16 29 H 0.20 2.28 8.06 -2.91 -0.02 2.26 16 30 H 0.15 4.75 6.47 -2.91 -0.02 4.73 16 31 H 0.41 14.09 6.00 -92.71 -0.56 13.53 16 32 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 33 H 0.05 1.84 6.87 -2.39 -0.02 1.82 16 34 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.04 1.53 7.67 -2.38 -0.02 1.51 16 36 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.00 0.14 7.35 -2.39 -0.02 0.12 16 38 H 0.01 0.54 7.40 -2.39 -0.02 0.52 16 39 H 0.02 0.89 6.53 -2.39 -0.02 0.87 16 40 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -65.16 327.66 3.19 -61.96 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.49 Total: 20.93 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: 6.60 Total: 17.98 kcal Atomic # 7 Polarization: -119.91 SS G_CDS: -5.87 Total: -125.78 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.05 Total: -20.86 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -65.16 3.19 -61.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674907795.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.646 kcal (2) G-P(sol) polarization free energy of solvation -65.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds