Wall clock time and date at job start Mon Mar 30 2020 01:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38346 * 120.34930 * 2 1 4 4 N 1.31929 * 121.07735 * 180.02562 * 3 2 1 5 5 C 1.31702 * 121.87816 * 359.67860 * 4 3 2 6 6 C 1.39515 * 120.56664 * 0.58231 * 5 4 3 7 7 C 1.47841 * 120.56275 * 179.72709 * 6 5 4 8 8 O 1.21549 * 120.00512 * 179.72104 * 7 6 5 9 9 N 1.34784 * 119.99402 * 359.72639 * 7 6 5 10 10 C 1.46497 * 119.99472 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.46737 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47133 * 65.00428 * 11 10 9 13 13 C 1.53001 * 109.47116 * 184.99974 * 11 10 9 14 14 N 1.46498 * 109.47644 * 305.00151 * 11 10 9 15 15 C 1.46504 * 119.99643 * 300.00292 * 14 11 10 16 16 C 1.36937 * 120.00316 * 119.99803 * 14 11 10 17 17 H 1.07996 * 119.99899 * 21.91776 * 16 14 11 18 18 C 1.38816 * 119.99989 * 201.92020 * 16 14 11 19 19 N 1.31617 * 119.99988 * 12.73463 * 18 16 14 20 20 Si 1.86796 * 119.99617 * 192.73387 * 18 16 14 21 21 H 1.48504 * 109.46910 * 90.00325 * 20 18 16 22 22 H 1.48497 * 109.47369 * 209.99835 * 20 18 16 23 23 H 1.48499 * 109.47563 * 330.00170 * 20 18 16 24 24 C 1.38362 * 120.34202 * 180.02562 * 2 1 3 25 25 H 1.08996 * 109.47371 * 269.97985 * 1 2 3 26 26 H 1.09008 * 109.46987 * 29.97559 * 1 2 3 27 27 H 1.09003 * 109.47457 * 149.97508 * 1 2 3 28 28 H 1.07998 * 119.46437 * 0.02562 * 3 2 1 29 29 H 1.07995 * 119.71540 * 180.29313 * 5 4 3 30 30 H 0.96996 * 120.00108 * 359.97438 * 9 7 6 31 31 H 1.09005 * 109.47331 * 60.00664 * 10 9 7 32 32 H 1.08993 * 109.47490 * 299.99819 * 10 9 7 33 33 H 1.09003 * 109.47128 * 59.99866 * 13 11 10 34 34 H 1.09000 * 109.47387 * 179.97438 * 13 11 10 35 35 H 1.09004 * 109.47450 * 300.00256 * 13 11 10 36 36 H 1.08999 * 109.47259 * 94.31140 * 15 14 11 37 37 H 1.09004 * 109.47031 * 214.31001 * 15 14 11 38 38 H 1.08996 * 109.47238 * 334.30885 * 15 14 11 39 39 H 0.97002 * 119.99446 * 179.97438 * 19 18 16 40 40 H 1.07998 * 120.85505 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1939 0.0000 4 7 3.5252 1.2106 -0.0005 5 6 4.2349 0.1012 0.0052 6 6 3.6053 -1.1438 -0.0001 7 6 4.4021 -2.3891 0.0003 8 8 3.8431 -3.4684 0.0008 9 7 5.7485 -2.3276 0.0003 10 6 6.5381 -3.5616 0.0012 11 6 8.0280 -3.2136 0.0003 12 1 8.2834 -2.7072 0.9311 13 6 8.8514 -4.4971 -0.1244 14 7 8.3231 -2.3322 -1.1321 15 6 8.0649 -2.7867 -2.5007 16 6 8.8401 -1.0835 -0.9113 17 1 9.3545 -0.8679 0.0134 18 6 8.7028 -0.0950 -1.8761 19 7 7.8724 -0.2683 -2.8825 20 14 9.6967 1.4813 -1.7461 21 1 10.9883 1.3122 -2.4592 22 1 8.9352 2.5987 -2.3598 23 1 9.9568 1.7860 -0.3162 24 6 2.2060 -1.1941 -0.0005 25 1 -0.3634 -0.0004 1.0276 26 1 -0.3633 0.8903 -0.5135 27 1 -0.3634 -0.8898 -0.5142 28 1 1.6630 2.1274 0.0004 29 1 5.3135 0.1557 0.0094 30 1 6.1947 -1.4663 -0.0004 31 1 6.3012 -4.1452 -0.8884 32 1 6.3012 -4.1438 0.8916 33 1 8.5960 -5.0036 -1.0552 34 1 9.9128 -4.2492 -0.1255 35 1 8.6320 -5.1530 0.7181 36 1 7.0779 -2.4481 -2.8159 37 1 8.8210 -2.3746 -3.1691 38 1 8.1038 -3.8754 -2.5354 39 1 7.7763 0.4227 -3.5564 40 1 1.6856 -2.1405 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674909315.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:50 Heat of formation + Delta-G solvation = -2.876872 kcal Electronic energy + Delta-G solvation = -21803.196565 eV Core-core repulsion = 18617.746224 eV Total energy + Delta-G solvation = -3185.450341 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.66097 -40.14575 -38.37658 -35.51352 -34.64065 -33.92834 -32.96294 -31.06190 -28.27593 -28.00335 -27.46354 -25.20664 -24.56183 -23.74763 -21.33165 -20.90562 -18.86931 -18.69978 -17.93405 -17.53709 -17.07070 -16.49771 -16.32725 -15.75269 -15.48333 -15.09168 -14.67675 -14.57852 -14.28103 -14.14088 -13.83554 -13.63009 -13.54811 -13.45296 -13.20016 -12.85884 -12.78861 -12.61048 -12.48921 -12.27143 -12.08476 -11.73615 -11.48077 -11.29715 -10.88886 -10.60222 -10.47415 -10.10052 -9.86539 -8.77676 -7.77176 -5.25064 -0.39239 0.14654 1.49219 1.52223 1.58640 1.80290 2.23640 2.53534 2.79550 3.30967 3.37008 3.64363 3.70853 3.81762 3.84653 3.92065 4.05359 4.21031 4.38684 4.50688 4.62154 4.70490 4.76244 4.82614 4.85064 4.85830 4.99586 5.09746 5.17151 5.22798 5.27730 5.31643 5.43642 5.58416 5.61345 5.70565 5.76128 6.35739 6.54987 6.82896 7.14467 7.19289 7.90669 8.35768 9.24076 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015256 B = 0.006146 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.933947 B = 4554.448385 C = 5970.883138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.138 4.138 3 C 0.114 3.886 4 N -0.506 5.506 5 C 0.126 3.874 6 C -0.193 4.193 7 C 0.556 3.444 8 O -0.583 6.583 9 N -0.695 5.695 10 C 0.112 3.888 11 C 0.155 3.845 12 H 0.075 0.925 13 C -0.148 4.148 14 N -0.603 5.603 15 C 0.182 3.818 16 C -0.259 4.259 17 H 0.075 0.925 18 C -0.040 4.040 19 N -0.928 5.928 20 Si 0.955 3.045 21 H -0.294 1.294 22 H -0.302 1.302 23 H -0.267 1.267 24 C -0.031 4.031 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.194 0.806 29 H 0.148 0.852 30 H 0.410 0.590 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.078 0.922 36 H -0.002 1.002 37 H 0.015 0.985 38 H 0.024 0.976 39 H 0.244 0.756 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.131 -1.003 7.422 13.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.140 4.140 3 C -0.043 4.043 4 N -0.214 5.214 5 C -0.032 4.032 6 C -0.198 4.198 7 C 0.343 3.657 8 O -0.466 6.466 9 N -0.344 5.344 10 C -0.014 4.014 11 C 0.048 3.952 12 H 0.093 0.907 13 C -0.208 4.208 14 N -0.326 5.326 15 C 0.037 3.963 16 C -0.389 4.389 17 H 0.093 0.907 18 C -0.236 4.236 19 N -0.574 5.574 20 Si 0.785 3.215 21 H -0.221 1.221 22 H -0.229 1.229 23 H -0.192 1.192 24 C -0.058 4.058 25 H 0.109 0.891 26 H 0.111 0.889 27 H 0.094 0.906 28 H 0.211 0.789 29 H 0.165 0.835 30 H 0.247 0.753 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.016 0.984 37 H 0.034 0.966 38 H 0.042 0.958 39 H 0.053 0.947 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -11.040 -0.861 7.294 13.260 hybrid contribution 0.679 0.467 -0.594 1.016 sum -10.361 -0.394 6.700 12.345 Atomic orbital electron populations 1.20816 0.86510 1.04653 1.04124 1.21303 0.99920 0.92451 1.00293 1.23563 0.89159 0.99454 0.92087 1.67726 1.09614 1.30901 1.13198 1.22924 1.00344 0.87195 0.92712 1.20998 0.96045 0.94090 1.08650 1.18319 0.82645 0.88513 0.76256 1.90671 1.71887 1.30663 1.53344 1.45872 1.05240 1.11583 1.71720 1.21974 0.92947 0.85649 1.00837 1.20864 0.90543 0.92367 0.91400 0.90690 1.22056 0.99925 0.96841 1.01942 1.44094 1.74152 1.13508 1.00859 1.20410 0.97549 0.92948 0.85379 1.19504 1.28271 0.87591 1.03506 0.90745 1.25557 0.99359 1.00062 0.98594 1.70239 1.37781 1.34401 1.14991 0.85450 0.77984 0.80175 0.77907 1.22096 1.22933 1.19164 1.21800 0.91616 1.00171 0.92180 0.89090 0.88928 0.90556 0.78890 0.83479 0.75279 0.93659 0.90643 0.93288 0.92681 0.90339 0.98400 0.96650 0.95793 0.94660 0.83205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.34 10.03 71.24 0.71 -0.63 16 2 C -0.14 -3.07 5.89 -19.81 -0.12 -3.19 16 3 C 0.11 2.78 10.85 84.70 0.92 3.70 16 4 N -0.51 -16.59 10.35 -194.76 -2.02 -18.61 16 5 C 0.13 4.48 10.71 85.02 0.91 5.39 16 6 C -0.19 -6.71 5.89 -19.99 -0.12 -6.83 16 7 C 0.56 21.81 7.78 86.78 0.68 22.48 16 8 O -0.58 -24.98 16.42 -3.87 -0.06 -25.04 16 9 N -0.70 -27.12 5.34 -465.98 -2.49 -29.60 16 10 C 0.11 4.05 4.97 86.38 0.43 4.48 16 11 C 0.16 5.66 2.87 44.99 0.13 5.79 16 12 H 0.07 2.66 7.86 -2.39 -0.02 2.64 16 13 C -0.15 -4.48 9.18 71.98 0.66 -3.82 16 14 N -0.60 -27.43 2.29 -702.77 -1.61 -29.04 16 15 C 0.18 8.75 8.10 127.77 1.04 9.78 16 16 C -0.26 -12.92 9.33 84.03 0.78 -12.13 16 17 H 0.07 3.59 7.81 -2.91 -0.02 3.57 16 18 C -0.04 -2.08 5.10 84.86 0.43 -1.65 16 19 N -0.93 -52.25 10.64 21.65 0.23 -52.02 16 20 Si 0.95 43.54 29.57 68.60 2.03 45.57 16 21 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 22 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 23 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 24 C -0.03 -0.89 9.39 22.73 0.21 -0.68 16 25 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.09 0.84 8.09 -2.38 -0.02 0.82 16 27 H 0.08 0.94 8.09 -2.39 -0.02 0.92 16 28 H 0.19 3.08 8.06 -2.91 -0.02 3.05 16 29 H 0.15 5.63 6.42 -2.91 -0.02 5.61 16 30 H 0.41 16.86 5.96 -92.71 -0.55 16.31 16 31 H 0.05 1.78 7.84 -2.38 -0.02 1.76 16 32 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.05 1.51 6.66 -2.39 -0.02 1.49 16 34 H 0.05 1.70 8.14 -2.39 -0.02 1.69 16 35 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 36 H 0.00 -0.12 7.42 -2.39 -0.02 -0.14 16 37 H 0.01 0.79 7.20 -2.38 -0.02 0.77 16 38 H 0.02 1.00 6.43 -2.39 -0.02 0.99 16 39 H 0.24 13.74 8.31 -92.71 -0.77 12.97 16 40 H 0.15 4.01 7.74 -2.91 -0.02 3.98 16 Total: -1.00 -64.82 332.50 3.24 -61.57 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: 0.49 Total: 24.48 kcal Atomic # 6 Polarization: 16.02 SS G_CDS: 6.67 Total: 22.69 kcal Atomic # 7 Polarization: -123.39 SS G_CDS: -5.88 Total: -129.27 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.06 Total: -25.04 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -64.82 3.24 -61.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674909315.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.697 kcal (2) G-P(sol) polarization free energy of solvation -64.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds