Wall clock time and date at job start Mon Mar 30 2020 01:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38354 * 120.35045 * 2 1 4 4 N 1.31924 * 121.08170 * 180.02562 * 3 2 1 5 5 C 1.31693 * 121.87875 * 359.97438 * 4 3 2 6 6 C 1.39525 * 120.56587 * 0.02562 * 5 4 3 7 7 C 1.47842 * 120.55433 * 180.02562 * 6 5 4 8 8 O 1.21555 * 119.99722 * 179.97438 * 7 6 5 9 9 N 1.34768 * 120.00345 * 359.97438 * 7 6 5 10 10 C 1.46500 * 120.00062 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47473 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.47180 * 295.00165 * 11 10 9 13 13 C 1.53001 * 109.47586 * 174.99963 * 11 10 9 14 14 N 1.46505 * 109.47059 * 54.99959 * 11 10 9 15 15 C 1.46497 * 119.99853 * 60.00163 * 14 11 10 16 16 C 1.36939 * 120.00320 * 240.00428 * 14 11 10 17 17 H 1.08006 * 119.99525 * 20.37037 * 16 14 11 18 18 C 1.38803 * 119.99919 * 200.37553 * 16 14 11 19 19 N 1.31619 * 120.00401 * 14.98899 * 18 16 14 20 20 Si 1.86800 * 119.99707 * 194.98779 * 18 16 14 21 21 H 1.48498 * 109.47248 * 84.97320 * 20 18 16 22 22 H 1.48505 * 109.47298 * 204.96905 * 20 18 16 23 23 H 1.48498 * 109.47432 * 324.96718 * 20 18 16 24 24 C 1.38349 * 120.34829 * 180.02562 * 2 1 3 25 25 H 1.09002 * 109.47035 * 269.97610 * 1 2 3 26 26 H 1.08998 * 109.46943 * 29.97600 * 1 2 3 27 27 H 1.09001 * 109.47292 * 149.97645 * 1 2 3 28 28 H 1.08008 * 119.45969 * 0.02562 * 3 2 1 29 29 H 1.08002 * 119.71633 * 180.02562 * 5 4 3 30 30 H 0.97003 * 120.00041 * 359.97438 * 9 7 6 31 31 H 1.08999 * 109.47418 * 299.99949 * 10 9 7 32 32 H 1.09003 * 109.47246 * 60.00481 * 10 9 7 33 33 H 1.08996 * 109.46621 * 59.99958 * 13 11 10 34 34 H 1.08995 * 109.46949 * 179.97438 * 13 11 10 35 35 H 1.08998 * 109.47026 * 300.00296 * 13 11 10 36 36 H 1.09002 * 109.47620 * 95.10634 * 15 14 11 37 37 H 1.08998 * 109.47547 * 215.10824 * 15 14 11 38 38 H 1.09004 * 109.47101 * 335.10713 * 15 14 11 39 39 H 0.96998 * 120.00119 * 179.97438 * 19 18 16 40 40 H 1.07998 * 120.85811 * 0.25139 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2061 1.1939 0.0000 4 7 3.5252 1.2108 -0.0005 5 6 4.2349 0.1014 -0.0005 6 6 3.6053 -1.1437 -0.0006 7 6 4.4023 -2.3889 0.0000 8 8 3.8433 -3.4682 0.0004 9 7 5.7486 -2.3273 0.0000 10 6 6.5383 -3.5612 0.0011 11 6 8.0282 -3.2133 0.0015 12 1 8.2837 -2.7083 -0.9301 13 6 8.8517 -4.4966 0.1284 14 7 8.3231 -2.3300 1.1325 15 6 8.0649 -2.7823 2.5018 16 6 8.8401 -1.0817 0.9098 17 1 8.7297 -0.6165 -0.0586 18 6 9.5059 -0.4143 1.9286 19 7 9.9009 -1.0722 2.9980 20 14 9.8412 1.4174 1.7820 21 1 8.6550 2.1770 2.2521 22 1 11.0185 1.7734 2.6143 23 1 10.1169 1.7582 0.3632 24 6 2.2060 -1.1939 -0.0005 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3634 -0.8898 -0.5142 28 1 1.6630 2.1275 0.0004 29 1 5.3136 0.1560 -0.0005 30 1 6.1947 -1.4660 -0.0007 31 1 6.3014 -4.1435 0.8916 32 1 6.3015 -4.1450 -0.8885 33 1 8.6323 -5.1537 -0.7131 34 1 9.9131 -4.2486 0.1282 35 1 8.5962 -5.0016 1.0599 36 1 8.9792 -3.1977 2.9258 37 1 7.7346 -1.9382 3.1071 38 1 7.2889 -3.5477 2.4914 39 1 10.3665 -0.6059 3.7098 40 1 1.6859 -2.1404 -0.0050 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674909316.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:54 Heat of formation + Delta-G solvation = 15.642948 kcal Electronic energy + Delta-G solvation = -21594.271889 eV Core-core repulsion = 18409.624628 eV Total energy + Delta-G solvation = -3184.647261 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.56432 -38.87521 -36.74108 -34.10870 -33.56920 -32.43493 -31.64105 -29.34904 -27.47438 -26.18942 -26.05475 -23.84141 -22.96626 -22.73283 -20.06397 -19.36155 -17.56244 -16.95672 -16.82578 -16.42462 -15.42057 -15.19438 -14.80693 -14.33294 -14.20918 -13.86050 -13.46708 -13.14968 -12.92146 -12.77235 -12.74735 -12.72795 -12.29561 -12.05959 -11.99637 -11.46803 -11.10571 -10.85086 -10.77562 -10.42567 -10.31210 -10.02447 -9.91646 -9.82563 -9.81100 -9.36044 -9.06573 -8.62370 -8.56820 -6.86495 -5.78052 -3.23640 0.65725 1.13982 3.03347 3.36161 3.42410 3.43883 3.48527 3.87725 4.30785 4.43934 4.59709 4.75510 4.85848 4.87667 5.13486 5.34084 5.34821 5.37317 5.41254 5.53559 5.56930 5.74661 5.87735 6.01270 6.04533 6.09587 6.15986 6.27816 6.40685 6.51681 6.71689 6.80511 6.82244 6.98400 7.36207 7.67593 7.76194 7.82321 7.91596 8.31727 8.49726 9.16833 9.80600 10.29046 11.26334 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015986 B = 0.005557 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.166605 B = 5037.868384 C = 6404.454728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.152 4.152 3 C 0.115 3.885 4 N -0.482 5.482 5 C 0.133 3.867 6 C -0.176 4.176 7 C 0.556 3.444 8 O -0.553 6.553 9 N -0.697 5.697 10 C 0.106 3.894 11 C 0.157 3.843 12 H 0.069 0.931 13 C -0.156 4.156 14 N -0.594 5.594 15 C 0.165 3.835 16 C -0.265 4.265 17 H 0.070 0.930 18 C 0.007 3.993 19 N -0.902 5.902 20 Si 0.900 3.100 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.279 1.279 24 C -0.022 4.022 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.157 0.843 29 H 0.165 0.835 30 H 0.410 0.590 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.042 0.958 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.029 0.971 37 H 0.041 0.959 38 H -0.001 1.001 39 H 0.253 0.747 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.321 0.499 -6.315 15.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.154 4.154 3 C -0.042 4.042 4 N -0.190 5.190 5 C -0.025 4.025 6 C -0.181 4.181 7 C 0.342 3.658 8 O -0.433 6.433 9 N -0.347 5.347 10 C -0.020 4.020 11 C 0.048 3.952 12 H 0.087 0.913 13 C -0.216 4.216 14 N -0.318 5.318 15 C 0.020 3.980 16 C -0.395 4.395 17 H 0.088 0.912 18 C -0.192 4.192 19 N -0.546 5.546 20 Si 0.730 3.270 21 H -0.213 1.213 22 H -0.218 1.218 23 H -0.205 1.205 24 C -0.049 4.049 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.175 0.825 29 H 0.182 0.818 30 H 0.248 0.752 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.047 0.953 37 H 0.060 0.940 38 H 0.017 0.983 39 H 0.063 0.937 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -14.119 0.603 -6.146 15.410 hybrid contribution 0.207 0.577 0.184 0.640 sum -13.912 1.180 -5.962 15.182 Atomic orbital electron populations 1.20706 0.89828 1.03187 1.02739 1.20904 0.97826 0.93852 1.02797 1.22894 0.90081 0.97538 0.93693 1.67732 1.07872 1.31123 1.12248 1.23172 1.00788 0.86710 0.91842 1.21114 0.95111 0.95183 1.06675 1.18006 0.82588 0.88082 0.77165 1.90728 1.71446 1.29630 1.51447 1.45837 1.05024 1.11559 1.72292 1.22019 0.93254 0.85669 1.01032 1.20623 0.89902 0.91801 0.92879 0.91269 1.22183 1.01289 0.97770 1.00353 1.44024 1.73710 1.13565 1.00466 1.20728 0.96040 0.96114 0.85086 1.19202 1.30508 0.91203 0.98539 0.91191 1.24957 0.98033 0.98405 0.97804 1.70089 1.41057 1.34150 1.09301 0.86347 0.77564 0.85552 0.77521 1.21271 1.21803 1.20485 1.21595 0.92532 0.98813 0.91923 0.90801 0.91089 0.91173 0.82545 0.81783 0.75240 0.91848 0.92195 0.93934 0.92155 0.93129 0.95303 0.94035 0.98299 0.93693 0.83740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.03 36.01 0.36 -0.41 16 2 C -0.15 -1.65 5.89 -104.54 -0.62 -2.26 16 3 C 0.12 1.34 10.85 -17.47 -0.19 1.15 16 4 N -0.48 -7.05 10.35 -12.91 -0.13 -7.18 16 5 C 0.13 1.99 10.71 -17.13 -0.18 1.81 16 6 C -0.18 -2.66 5.89 -104.82 -0.62 -3.28 16 7 C 0.56 9.65 7.78 -12.33 -0.10 9.55 16 8 O -0.55 -10.89 16.42 5.32 0.09 -10.81 16 9 N -0.70 -12.01 5.34 -61.25 -0.33 -12.34 16 10 C 0.11 1.84 4.94 -4.04 -0.02 1.82 16 11 C 0.16 2.95 2.87 -67.93 -0.19 2.75 16 12 H 0.07 1.28 7.85 -51.93 -0.41 0.87 16 13 C -0.16 -2.70 9.19 37.16 0.34 -2.36 16 14 N -0.59 -13.60 2.29 -173.48 -0.40 -14.00 16 15 C 0.16 3.91 8.00 59.85 0.48 4.39 16 16 C -0.27 -6.67 9.34 -15.06 -0.14 -6.81 16 17 H 0.07 1.69 7.81 -52.48 -0.41 1.28 16 18 C 0.01 0.19 5.06 -17.43 -0.09 0.10 16 19 N -0.90 -25.38 10.67 55.49 0.59 -24.78 16 20 Si 0.90 21.03 29.58 -169.99 -5.03 16.00 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 C -0.02 -0.29 9.39 -38.87 -0.37 -0.65 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 27 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 28 H 0.16 1.32 8.06 -52.48 -0.42 0.90 16 29 H 0.17 2.41 6.42 -52.49 -0.34 2.07 16 30 H 0.41 7.07 5.96 -40.82 -0.24 6.83 16 31 H 0.06 1.18 6.86 -51.93 -0.36 0.83 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.05 0.89 7.67 -51.93 -0.40 0.49 16 36 H 0.03 0.75 7.40 -51.93 -0.38 0.36 16 37 H 0.04 1.07 7.21 -51.93 -0.37 0.70 16 38 H 0.00 -0.03 6.53 -51.93 -0.34 -0.37 16 39 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.14 1.78 7.74 -52.49 -0.41 1.38 16 LS Contribution 332.51 15.07 5.01 5.01 Total: -1.00 -30.39 332.51 -7.27 -37.66 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -5.75 Total: 4.64 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -1.33 Total: 5.80 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: -0.27 Total: -58.30 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.39 -7.27 -37.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674909316.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.301 kcal (2) G-P(sol) polarization free energy of solvation -30.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds