Wall clock time and date at job start Mon Mar 30 2020 01:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38354 * 120.35045 * 2 1 4 4 N 1.31924 * 121.08170 * 180.02562 * 3 2 1 5 5 C 1.31693 * 121.87875 * 359.97438 * 4 3 2 6 6 C 1.39525 * 120.56587 * 0.02562 * 5 4 3 7 7 C 1.47842 * 120.55433 * 180.02562 * 6 5 4 8 8 O 1.21555 * 119.99722 * 179.97438 * 7 6 5 9 9 N 1.34768 * 120.00345 * 359.97438 * 7 6 5 10 10 C 1.46500 * 120.00062 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47473 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.47180 * 295.00165 * 11 10 9 13 13 C 1.53001 * 109.47586 * 174.99963 * 11 10 9 14 14 N 1.46505 * 109.47059 * 54.99959 * 11 10 9 15 15 C 1.46497 * 119.99853 * 60.00163 * 14 11 10 16 16 C 1.36939 * 120.00320 * 240.00428 * 14 11 10 17 17 H 1.08006 * 119.99525 * 20.37037 * 16 14 11 18 18 C 1.38803 * 119.99919 * 200.37553 * 16 14 11 19 19 N 1.31619 * 120.00401 * 14.98899 * 18 16 14 20 20 Si 1.86800 * 119.99707 * 194.98779 * 18 16 14 21 21 H 1.48498 * 109.47248 * 84.97320 * 20 18 16 22 22 H 1.48505 * 109.47298 * 204.96905 * 20 18 16 23 23 H 1.48498 * 109.47432 * 324.96718 * 20 18 16 24 24 C 1.38349 * 120.34829 * 180.02562 * 2 1 3 25 25 H 1.09002 * 109.47035 * 269.97610 * 1 2 3 26 26 H 1.08998 * 109.46943 * 29.97600 * 1 2 3 27 27 H 1.09001 * 109.47292 * 149.97645 * 1 2 3 28 28 H 1.08008 * 119.45969 * 0.02562 * 3 2 1 29 29 H 1.08002 * 119.71633 * 180.02562 * 5 4 3 30 30 H 0.97003 * 120.00041 * 359.97438 * 9 7 6 31 31 H 1.08999 * 109.47418 * 299.99949 * 10 9 7 32 32 H 1.09003 * 109.47246 * 60.00481 * 10 9 7 33 33 H 1.08996 * 109.46621 * 59.99958 * 13 11 10 34 34 H 1.08995 * 109.46949 * 179.97438 * 13 11 10 35 35 H 1.08998 * 109.47026 * 300.00296 * 13 11 10 36 36 H 1.09002 * 109.47620 * 95.10634 * 15 14 11 37 37 H 1.08998 * 109.47547 * 215.10824 * 15 14 11 38 38 H 1.09004 * 109.47101 * 335.10713 * 15 14 11 39 39 H 0.96998 * 120.00119 * 179.97438 * 19 18 16 40 40 H 1.07998 * 120.85811 * 0.25139 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2061 1.1939 0.0000 4 7 3.5252 1.2108 -0.0005 5 6 4.2349 0.1014 -0.0005 6 6 3.6053 -1.1437 -0.0006 7 6 4.4023 -2.3889 0.0000 8 8 3.8433 -3.4682 0.0004 9 7 5.7486 -2.3273 0.0000 10 6 6.5383 -3.5612 0.0011 11 6 8.0282 -3.2133 0.0015 12 1 8.2837 -2.7083 -0.9301 13 6 8.8517 -4.4966 0.1284 14 7 8.3231 -2.3300 1.1325 15 6 8.0649 -2.7823 2.5018 16 6 8.8401 -1.0817 0.9098 17 1 8.7297 -0.6165 -0.0586 18 6 9.5059 -0.4143 1.9286 19 7 9.9009 -1.0722 2.9980 20 14 9.8412 1.4174 1.7820 21 1 8.6550 2.1770 2.2521 22 1 11.0185 1.7734 2.6143 23 1 10.1169 1.7582 0.3632 24 6 2.2060 -1.1939 -0.0005 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3634 -0.8898 -0.5142 28 1 1.6630 2.1275 0.0004 29 1 5.3136 0.1560 -0.0005 30 1 6.1947 -1.4660 -0.0007 31 1 6.3014 -4.1435 0.8916 32 1 6.3015 -4.1450 -0.8885 33 1 8.6323 -5.1537 -0.7131 34 1 9.9131 -4.2486 0.1282 35 1 8.5962 -5.0016 1.0599 36 1 8.9792 -3.1977 2.9258 37 1 7.7346 -1.9382 3.1071 38 1 7.2889 -3.5477 2.4914 39 1 10.3665 -0.6059 3.7098 40 1 1.6859 -2.1404 -0.0050 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674909316.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:53 Heat of formation + Delta-G solvation = -3.431956 kcal Electronic energy + Delta-G solvation = -21595.099039 eV Core-core repulsion = 18409.624628 eV Total energy + Delta-G solvation = -3185.474411 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.67870 -40.17178 -38.39653 -35.56801 -34.64483 -33.91731 -32.95296 -31.11699 -28.28984 -28.02662 -27.48668 -25.21306 -24.59999 -23.75148 -21.37231 -20.92672 -18.93569 -18.67077 -17.94003 -17.51992 -17.15917 -16.51074 -16.28980 -15.76180 -15.56253 -15.09310 -14.70998 -14.56730 -14.32707 -14.16226 -13.86979 -13.64663 -13.50074 -13.45488 -13.07079 -12.87513 -12.80354 -12.66890 -12.53819 -12.28720 -12.09512 -11.77925 -11.51990 -11.31833 -10.89246 -10.61096 -10.48037 -10.12378 -9.89058 -8.81066 -7.79362 -5.25062 -0.40466 0.14260 1.49661 1.52568 1.57889 1.79296 2.18004 2.53023 2.78786 3.29850 3.35974 3.62224 3.69392 3.80457 3.84382 3.91896 4.03193 4.20372 4.34968 4.49678 4.60149 4.69946 4.75516 4.77220 4.85238 4.91596 4.98965 5.04114 5.17212 5.23066 5.23305 5.33437 5.41230 5.53270 5.60264 5.68358 5.74705 6.34026 6.51958 6.81879 7.11870 7.18037 7.89240 8.33903 9.24325 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015986 B = 0.005557 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.166605 B = 5037.868384 C = 6404.454728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.138 4.138 3 C 0.116 3.884 4 N -0.506 5.506 5 C 0.122 3.878 6 C -0.192 4.192 7 C 0.557 3.443 8 O -0.580 6.580 9 N -0.698 5.698 10 C 0.115 3.885 11 C 0.156 3.844 12 H 0.076 0.924 13 C -0.148 4.148 14 N -0.603 5.603 15 C 0.185 3.815 16 C -0.257 4.257 17 H 0.082 0.918 18 C -0.048 4.048 19 N -0.937 5.937 20 Si 0.958 3.042 21 H -0.289 1.289 22 H -0.303 1.303 23 H -0.266 1.266 24 C -0.031 4.031 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.193 0.807 29 H 0.158 0.842 30 H 0.410 0.590 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.042 0.958 35 H 0.044 0.956 36 H 0.002 0.998 37 H 0.012 0.988 38 H 0.019 0.981 39 H 0.245 0.755 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.418 1.212 -7.822 18.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.139 4.139 3 C -0.041 4.041 4 N -0.214 5.214 5 C -0.036 4.036 6 C -0.197 4.197 7 C 0.344 3.656 8 O -0.462 6.462 9 N -0.348 5.348 10 C -0.011 4.011 11 C 0.048 3.952 12 H 0.095 0.905 13 C -0.208 4.208 14 N -0.327 5.327 15 C 0.040 3.960 16 C -0.387 4.387 17 H 0.100 0.900 18 C -0.244 4.244 19 N -0.584 5.584 20 Si 0.788 3.212 21 H -0.216 1.216 22 H -0.230 1.230 23 H -0.190 1.190 24 C -0.057 4.057 25 H 0.104 0.896 26 H 0.112 0.888 27 H 0.096 0.904 28 H 0.210 0.790 29 H 0.175 0.825 30 H 0.247 0.753 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.020 0.980 37 H 0.031 0.969 38 H 0.038 0.962 39 H 0.054 0.946 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -16.225 1.308 -7.698 18.006 hybrid contribution 0.731 0.346 0.589 1.001 sum -15.494 1.654 -7.109 17.127 Atomic orbital electron populations 1.20821 0.86756 1.04767 1.03934 1.21286 0.99819 0.92555 1.00281 1.23545 0.89251 0.99366 0.91967 1.67744 1.09513 1.30928 1.13166 1.23056 1.00714 0.86974 0.92862 1.20976 0.95896 0.94076 1.08795 1.18318 0.82493 0.88548 0.76207 1.90701 1.71843 1.30777 1.52902 1.45861 1.05248 1.11417 1.72289 1.21876 0.92023 0.85829 1.01323 1.20805 0.90955 0.91906 0.91491 0.90543 1.22068 0.99695 0.97393 1.01625 1.44163 1.73437 1.13934 1.01128 1.20364 0.95142 0.95148 0.85318 1.19589 1.28483 0.92017 0.98569 0.89991 1.25626 0.99004 1.01756 0.97995 1.70249 1.42866 1.35215 1.10112 0.85412 0.76553 0.81522 0.77748 1.21581 1.23021 1.19045 1.21802 0.91810 1.00094 0.92010 0.89587 0.88786 0.90411 0.79018 0.82525 0.75285 0.93103 0.90283 0.90353 0.93916 0.93730 0.98003 0.96932 0.96241 0.94609 0.83325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 10.03 71.24 0.71 -0.40 16 2 C -0.14 -2.61 5.89 -19.81 -0.12 -2.73 16 3 C 0.12 2.38 10.85 84.71 0.92 3.30 16 4 N -0.51 -14.12 10.35 -194.75 -2.01 -16.13 16 5 C 0.12 3.61 10.71 85.02 0.91 4.52 16 6 C -0.19 -5.74 5.89 -19.99 -0.12 -5.86 16 7 C 0.56 19.22 7.78 86.79 0.68 19.89 16 8 O -0.58 -22.68 16.42 -3.89 -0.06 -22.74 16 9 N -0.70 -23.81 5.34 -465.98 -2.49 -26.30 16 10 C 0.11 3.87 4.94 86.38 0.43 4.30 16 11 C 0.16 5.67 2.87 44.99 0.13 5.80 16 12 H 0.08 2.70 7.85 -2.39 -0.02 2.68 16 13 C -0.15 -4.92 9.19 71.98 0.66 -4.26 16 14 N -0.60 -27.60 2.29 -702.77 -1.61 -29.21 16 15 C 0.19 8.98 8.00 127.77 1.02 10.01 16 16 C -0.26 -12.86 9.34 84.03 0.79 -12.08 16 17 H 0.08 3.86 7.81 -2.91 -0.02 3.84 16 18 C -0.05 -2.59 5.06 84.86 0.43 -2.16 16 19 N -0.94 -54.24 10.67 21.65 0.23 -54.01 16 20 Si 0.96 43.71 29.58 68.60 2.03 45.74 16 21 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 22 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 23 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 24 C -0.03 -0.76 9.39 22.73 0.21 -0.55 16 25 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.09 0.61 8.09 -2.39 -0.02 0.59 16 27 H 0.08 0.75 8.09 -2.39 -0.02 0.73 16 28 H 0.19 2.45 8.06 -2.91 -0.02 2.43 16 29 H 0.16 4.69 6.42 -2.91 -0.02 4.67 16 30 H 0.41 14.09 5.96 -92.71 -0.55 13.54 16 31 H 0.05 1.85 6.86 -2.39 -0.02 1.84 16 32 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.04 1.52 7.67 -2.39 -0.02 1.50 16 36 H 0.00 0.09 7.40 -2.39 -0.02 0.07 16 37 H 0.01 0.64 7.21 -2.39 -0.02 0.63 16 38 H 0.02 0.84 6.53 -2.39 -0.02 0.82 16 39 H 0.24 13.99 8.31 -92.71 -0.77 13.22 16 40 H 0.15 3.49 7.74 -2.91 -0.02 3.47 16 Total: -1.00 -66.13 332.51 3.23 -62.90 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.49 Total: 19.98 kcal Atomic # 6 Polarization: 13.12 SS G_CDS: 6.65 Total: 19.77 kcal Atomic # 7 Polarization: -119.77 SS G_CDS: -5.88 Total: -125.65 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.06 Total: -22.74 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -66.13 3.23 -62.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674909316.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.471 kcal (2) G-P(sol) polarization free energy of solvation -66.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds