Wall clock time and date at job start Mon Mar 30 2020 01:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38682 * 120.78768 * 2 1 4 4 C 1.38185 * 119.16016 * 179.97438 * 3 2 1 5 5 N 1.31880 * 120.76785 * 0.02562 * 4 3 2 6 6 C 1.31860 * 121.72574 * 359.97438 * 5 4 3 7 7 C 1.38220 * 120.76174 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.41702 * 179.97438 * 7 6 5 9 9 N 1.46499 * 109.47112 * 259.99894 * 8 7 6 10 10 C 1.34777 * 119.99964 * 180.02562 * 9 8 7 11 11 O 1.21583 * 120.00307 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00026 * 179.97438 * 10 9 8 13 13 C 1.46499 * 120.00032 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47310 * 180.02562 * 13 12 10 15 15 C 1.52991 * 109.47541 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47500 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99999 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00134 * 180.02562 * 16 15 14 19 19 N 1.31519 * 120.00140 * 179.97438 * 18 16 15 20 20 Si 1.86793 * 120.00135 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47224 * 90.00223 * 20 18 16 22 22 H 1.48496 * 109.47438 * 209.99874 * 20 18 16 23 23 H 1.48503 * 109.47371 * 330.00198 * 20 18 16 24 24 H 1.08998 * 109.46474 * 90.00522 * 1 2 3 25 25 H 1.08995 * 109.47240 * 210.00075 * 1 2 3 26 26 H 1.09002 * 109.47392 * 330.00783 * 1 2 3 27 27 H 1.07995 * 120.41697 * 0.26627 * 3 2 1 28 28 H 1.08003 * 119.60983 * 179.97438 * 4 3 2 29 29 H 1.08001 * 119.61792 * 180.02562 * 6 5 4 30 30 H 1.08996 * 109.47417 * 19.99912 * 8 7 6 31 31 H 1.09001 * 109.47161 * 139.99725 * 8 7 6 32 32 H 0.97002 * 120.00252 * 0.02562 * 9 8 7 33 33 H 0.97004 * 119.99922 * 0.02562 * 12 10 9 34 34 H 1.08996 * 109.47851 * 300.00602 * 13 12 10 35 35 H 1.08999 * 109.47011 * 60.00604 * 13 12 10 36 36 H 1.08996 * 109.47116 * 300.01004 * 14 13 12 37 37 H 1.09005 * 109.47073 * 60.00291 * 14 13 12 38 38 H 1.08996 * 109.47633 * 300.00562 * 15 14 13 39 39 H 1.08999 * 109.46998 * 60.00422 * 15 14 13 40 40 H 0.97000 * 120.00203 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1914 0.0000 4 6 3.5981 1.1521 0.0005 5 7 4.2403 0.0003 0.0005 6 6 3.5984 -1.1515 0.0005 7 6 2.2167 -1.1908 0.0011 8 6 1.4909 -2.5115 0.0005 9 7 1.0450 -2.8231 -1.3598 10 6 0.3688 -3.9634 -1.6027 11 8 0.1285 -4.7333 -0.6929 12 7 -0.0419 -4.2498 -2.8540 13 6 -0.7764 -5.4895 -3.1182 14 6 -1.1216 -5.5706 -4.6065 15 6 -1.8892 -6.8649 -4.8823 16 6 -2.2286 -6.9451 -6.3484 17 1 -1.9273 -6.1519 -7.0166 18 6 -2.9247 -8.0305 -6.8366 19 7 -3.2213 -8.1002 -8.1159 20 14 -3.4464 -9.4021 -5.6808 21 1 -4.7924 -9.1008 -5.1307 22 1 -3.4921 -10.6862 -6.4252 23 1 -2.4695 -9.5099 -4.5676 24 1 -0.3632 -0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.6967 2.1378 0.0043 28 1 4.1582 2.0756 0.0001 29 1 4.1586 -2.0749 0.0010 30 1 2.1624 -3.2953 0.3511 31 1 0.6263 -2.4513 0.6615 32 1 1.2364 -2.2087 -2.0856 33 1 0.1495 -3.6353 -3.5798 34 1 -0.1586 -6.3439 -2.8418 35 1 -1.6945 -5.5000 -2.5309 36 1 -1.7392 -4.7162 -4.8833 37 1 -0.2032 -5.5603 -5.1936 38 1 -1.2719 -7.7195 -4.6055 39 1 -2.8076 -6.8748 -4.2954 40 1 -3.7107 -8.8640 -8.4594 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001678788214.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:14 Heat of formation + Delta-G solvation = -13.469224 kcal Electronic energy + Delta-G solvation = -20166.181143 eV Core-core repulsion = 16980.271483 eV Total energy + Delta-G solvation = -3185.909660 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.89119 -39.74613 -36.08783 -35.21544 -33.92141 -33.30426 -31.99735 -31.15899 -28.51743 -27.45947 -26.08140 -23.22531 -22.81071 -21.80265 -20.95416 -20.30860 -18.30804 -17.18428 -16.96670 -16.75390 -16.29756 -15.60841 -15.36965 -14.82154 -14.39561 -14.32505 -14.23806 -13.80519 -13.55398 -13.34319 -13.22410 -13.06808 -12.70003 -12.64498 -11.97619 -11.89363 -11.73002 -11.07304 -10.89354 -10.38486 -10.05460 -9.91833 -9.87369 -9.82319 -9.70482 -9.47466 -9.30598 -9.23086 -8.70755 -8.55736 -6.06646 -4.05387 0.58108 0.80071 2.75223 3.27026 3.31337 3.38952 3.40504 3.43491 3.98924 4.21524 4.26931 4.34779 4.41663 4.44348 4.52440 4.98113 5.04831 5.09376 5.18854 5.27531 5.32247 5.41165 5.54223 5.57818 5.67989 5.68607 5.92701 6.02930 6.25230 6.29532 6.36490 6.46234 6.67454 6.81233 6.95134 7.23127 7.36461 7.54843 7.75439 8.04679 8.49723 8.64841 8.97121 9.55633 11.06575 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038644 B = 0.002508 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.388251 B =11163.000499 C =11306.185770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.021 4.021 3 C -0.178 4.178 4 C 0.106 3.894 5 N -0.491 5.491 6 C 0.123 3.877 7 C -0.162 4.162 8 C 0.186 3.814 9 N -0.747 5.747 10 C 0.701 3.299 11 O -0.593 6.593 12 N -0.741 5.741 13 C 0.133 3.867 14 C -0.113 4.113 15 C -0.011 4.011 16 C -0.522 4.522 17 H 0.072 0.928 18 C 0.066 3.934 19 N -0.903 5.903 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.264 1.264 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.136 0.864 28 H 0.156 0.844 29 H 0.158 0.842 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.395 0.605 33 H 0.395 0.605 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.019 0.981 39 H 0.015 0.985 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.204 19.833 17.393 28.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.030 4.030 3 C -0.198 4.198 4 C -0.050 4.050 5 N -0.199 5.199 6 C -0.034 4.034 7 C -0.165 4.165 8 C 0.061 3.939 9 N -0.404 5.404 10 C 0.401 3.599 11 O -0.471 6.471 12 N -0.395 5.395 13 C 0.010 3.990 14 C -0.151 4.151 15 C -0.049 4.049 16 C -0.560 4.560 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.542 5.542 20 Si 0.707 3.293 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.188 1.188 24 H 0.099 0.901 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.154 0.846 28 H 0.174 0.826 29 H 0.175 0.825 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.229 0.771 33 H 0.228 0.772 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.037 0.963 39 H 0.033 0.967 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.785 18.967 18.113 28.753 hybrid contribution -1.050 -0.081 -0.270 1.087 sum 10.735 18.887 17.843 28.113 Atomic orbital electron populations 1.20929 0.89893 1.03729 1.03422 1.20311 0.96985 0.92355 0.93328 1.22083 0.95635 0.98698 1.03345 1.22832 0.91821 0.96375 0.93997 1.67760 1.41095 0.98447 1.12641 1.22794 0.90874 0.96494 0.93263 1.20826 0.95307 0.95309 1.05038 1.19844 0.98285 0.91941 0.83788 1.45121 1.61853 1.23094 1.10315 1.15977 0.78682 0.81518 0.83696 1.90925 1.62349 1.49941 1.43904 1.45335 1.60944 1.25499 1.07727 1.21521 0.95306 0.84164 0.98053 1.21705 1.00778 1.01012 0.91593 1.19499 0.95075 0.92548 0.97779 1.21095 1.35915 1.07022 0.91948 0.91036 1.25032 0.95383 0.98119 0.94988 1.69914 1.40499 1.30826 1.12992 0.86770 0.79517 0.81617 0.81370 1.20251 1.21384 1.18846 0.90076 0.90367 0.90887 0.84611 0.82648 0.82469 0.90506 0.90392 0.77137 0.77154 0.91935 0.91947 0.92183 0.92131 0.96266 0.96714 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 9.68 36.00 0.35 -0.37 16 2 C -0.02 -0.15 5.92 -104.32 -0.62 -0.77 16 3 C -0.18 -1.11 9.82 -39.44 -0.39 -1.50 16 4 C 0.11 0.76 11.18 -17.55 -0.20 0.56 16 5 N -0.49 -4.55 10.36 -13.25 -0.14 -4.69 16 6 C 0.12 1.03 10.83 -17.55 -0.19 0.84 16 7 C -0.16 -1.26 5.27 -104.48 -0.55 -1.81 16 8 C 0.19 1.66 5.25 -5.19 -0.03 1.63 16 9 N -0.75 -7.34 5.55 -66.41 -0.37 -7.71 16 10 C 0.70 9.86 8.57 -86.92 -0.74 9.11 16 11 O -0.59 -10.85 16.34 5.29 0.09 -10.76 16 12 N -0.74 -9.95 5.56 -65.23 -0.36 -10.31 16 13 C 0.13 2.19 5.67 -4.04 -0.02 2.16 16 14 C -0.11 -2.08 5.27 -26.73 -0.14 -2.22 16 15 C -0.01 -0.26 4.04 -27.89 -0.11 -0.37 16 16 C -0.52 -14.64 9.66 -34.44 -0.33 -14.98 16 17 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 18 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 19 N -0.90 -27.72 13.96 55.43 0.77 -26.94 16 20 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 24 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.08 0.52 6.27 -51.93 -0.33 0.19 16 26 H 0.07 0.33 8.10 -51.93 -0.42 -0.09 16 27 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 28 H 0.16 0.71 8.06 -52.48 -0.42 0.29 16 29 H 0.16 1.09 8.04 -52.49 -0.42 0.67 16 30 H 0.08 0.72 8.02 -51.93 -0.42 0.30 16 31 H 0.08 0.73 6.53 -51.93 -0.34 0.39 16 32 H 0.40 3.06 8.48 -40.82 -0.35 2.71 16 33 H 0.40 4.22 8.49 -40.82 -0.35 3.88 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 39 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 40 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 338.44 15.07 5.10 5.10 Total: -1.00 -34.33 338.44 -8.58 -42.91 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -5.93 Total: 1.26 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -3.07 Total: -5.89 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: -0.10 Total: -49.65 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.09 Total: -10.76 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.33 -8.58 -42.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001678788214.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.436 kcal (2) G-P(sol) polarization free energy of solvation -34.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds