Wall clock time and date at job start Mon Mar 30 2020 01:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38682 * 120.78768 * 2 1 4 4 C 1.38185 * 119.16016 * 179.97438 * 3 2 1 5 5 N 1.31880 * 120.76785 * 0.02562 * 4 3 2 6 6 C 1.31860 * 121.72574 * 359.97438 * 5 4 3 7 7 C 1.38220 * 120.76174 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.41702 * 179.97438 * 7 6 5 9 9 N 1.46499 * 109.47112 * 259.99894 * 8 7 6 10 10 C 1.34777 * 119.99964 * 180.02562 * 9 8 7 11 11 O 1.21583 * 120.00307 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00026 * 179.97438 * 10 9 8 13 13 C 1.46499 * 120.00032 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47310 * 180.02562 * 13 12 10 15 15 C 1.52991 * 109.47541 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47500 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99999 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00134 * 180.02562 * 16 15 14 19 19 N 1.31519 * 120.00140 * 179.97438 * 18 16 15 20 20 Si 1.86793 * 120.00135 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47224 * 90.00223 * 20 18 16 22 22 H 1.48496 * 109.47438 * 209.99874 * 20 18 16 23 23 H 1.48503 * 109.47371 * 330.00198 * 20 18 16 24 24 H 1.08998 * 109.46474 * 90.00522 * 1 2 3 25 25 H 1.08995 * 109.47240 * 210.00075 * 1 2 3 26 26 H 1.09002 * 109.47392 * 330.00783 * 1 2 3 27 27 H 1.07995 * 120.41697 * 0.26627 * 3 2 1 28 28 H 1.08003 * 119.60983 * 179.97438 * 4 3 2 29 29 H 1.08001 * 119.61792 * 180.02562 * 6 5 4 30 30 H 1.08996 * 109.47417 * 19.99912 * 8 7 6 31 31 H 1.09001 * 109.47161 * 139.99725 * 8 7 6 32 32 H 0.97002 * 120.00252 * 0.02562 * 9 8 7 33 33 H 0.97004 * 119.99922 * 0.02562 * 12 10 9 34 34 H 1.08996 * 109.47851 * 300.00602 * 13 12 10 35 35 H 1.08999 * 109.47011 * 60.00604 * 13 12 10 36 36 H 1.08996 * 109.47116 * 300.01004 * 14 13 12 37 37 H 1.09005 * 109.47073 * 60.00291 * 14 13 12 38 38 H 1.08996 * 109.47633 * 300.00562 * 15 14 13 39 39 H 1.08999 * 109.46998 * 60.00422 * 15 14 13 40 40 H 0.97000 * 120.00203 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1914 0.0000 4 6 3.5981 1.1521 0.0005 5 7 4.2403 0.0003 0.0005 6 6 3.5984 -1.1515 0.0005 7 6 2.2167 -1.1908 0.0011 8 6 1.4909 -2.5115 0.0005 9 7 1.0450 -2.8231 -1.3598 10 6 0.3688 -3.9634 -1.6027 11 8 0.1285 -4.7333 -0.6929 12 7 -0.0419 -4.2498 -2.8540 13 6 -0.7764 -5.4895 -3.1182 14 6 -1.1216 -5.5706 -4.6065 15 6 -1.8892 -6.8649 -4.8823 16 6 -2.2286 -6.9451 -6.3484 17 1 -1.9273 -6.1519 -7.0166 18 6 -2.9247 -8.0305 -6.8366 19 7 -3.2213 -8.1002 -8.1159 20 14 -3.4464 -9.4021 -5.6808 21 1 -4.7924 -9.1008 -5.1307 22 1 -3.4921 -10.6862 -6.4252 23 1 -2.4695 -9.5099 -4.5676 24 1 -0.3632 -0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.6967 2.1378 0.0043 28 1 4.1582 2.0756 0.0001 29 1 4.1586 -2.0749 0.0010 30 1 2.1624 -3.2953 0.3511 31 1 0.6263 -2.4513 0.6615 32 1 1.2364 -2.2087 -2.0856 33 1 0.1495 -3.6353 -3.5798 34 1 -0.1586 -6.3439 -2.8418 35 1 -1.6945 -5.5000 -2.5309 36 1 -1.7392 -4.7162 -4.8833 37 1 -0.2032 -5.5603 -5.1936 38 1 -1.2719 -7.7195 -4.6055 39 1 -2.8076 -6.8748 -4.2954 40 1 -3.7107 -8.8640 -8.4594 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001678788214.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:14 Heat of formation + Delta-G solvation = -38.044784 kcal Electronic energy + Delta-G solvation = -20167.246819 eV Core-core repulsion = 16980.271483 eV Total energy + Delta-G solvation = -3186.975336 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.54187 -40.77129 -37.23486 -36.32041 -35.13465 -34.56886 -33.34676 -32.30495 -29.27105 -28.74860 -27.05613 -24.54788 -23.66148 -22.45929 -22.23568 -21.78132 -19.41933 -18.90131 -17.78695 -17.52267 -17.24259 -16.79150 -16.34826 -16.02994 -15.71834 -15.50369 -15.12738 -14.90077 -14.72575 -14.29999 -14.05104 -13.79834 -13.75638 -13.62962 -13.54492 -13.18493 -12.71288 -12.66988 -12.25596 -11.92353 -11.77265 -11.57683 -11.38624 -11.30888 -10.75052 -10.50107 -10.42978 -10.34709 -10.06842 -9.76252 -8.28438 -6.32201 0.01546 0.26187 1.38025 1.39858 1.51720 1.77151 2.15252 2.37520 2.80709 3.07455 3.38105 3.44498 3.67828 3.78320 3.87906 3.95175 4.12410 4.24517 4.48085 4.52671 4.54301 4.57872 4.68651 4.75336 4.86157 4.92693 4.93789 5.02713 5.05849 5.20065 5.38660 5.40363 5.44118 5.54465 5.58248 5.66436 5.74858 5.98632 6.28608 6.75925 6.99398 7.08225 7.32676 7.57032 8.87951 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038644 B = 0.002508 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.388251 B =11163.000499 C =11306.185770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.025 4.025 3 C -0.174 4.174 4 C 0.098 3.902 5 N -0.519 5.519 6 C 0.112 3.888 7 C -0.164 4.164 8 C 0.190 3.810 9 N -0.727 5.727 10 C 0.701 3.299 11 O -0.636 6.636 12 N -0.733 5.733 13 C 0.147 3.853 14 C -0.099 4.099 15 C -0.012 4.012 16 C -0.530 4.530 17 H 0.037 0.963 18 C 0.003 3.997 19 N -0.951 5.951 20 Si 0.947 3.053 21 H -0.267 1.267 22 H -0.285 1.285 23 H -0.247 1.247 24 H 0.084 0.916 25 H 0.068 0.932 26 H 0.088 0.912 27 H 0.163 0.837 28 H 0.179 0.821 29 H 0.163 0.837 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.408 0.592 33 H 0.410 0.590 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.021 0.979 39 H 0.021 0.979 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.365 21.010 18.911 30.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.034 4.034 3 C -0.193 4.193 4 C -0.057 4.057 5 N -0.228 5.228 6 C -0.045 4.045 7 C -0.167 4.167 8 C 0.065 3.935 9 N -0.384 5.384 10 C 0.401 3.599 11 O -0.518 6.518 12 N -0.388 5.388 13 C 0.022 3.978 14 C -0.137 4.137 15 C -0.051 4.051 16 C -0.568 4.568 17 H 0.056 0.944 18 C -0.193 4.193 19 N -0.592 5.592 20 Si 0.771 3.229 21 H -0.192 1.192 22 H -0.211 1.211 23 H -0.171 1.171 24 H 0.103 0.897 25 H 0.087 0.913 26 H 0.107 0.893 27 H 0.180 0.820 28 H 0.196 0.804 29 H 0.180 0.820 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.244 0.756 33 H 0.246 0.754 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.979 20.207 19.621 30.608 hybrid contribution -1.053 -0.308 -0.786 1.350 sum 10.927 19.899 18.835 29.498 Atomic orbital electron populations 1.20942 0.89036 1.04076 1.03715 1.20524 0.97648 0.92355 0.92831 1.22362 0.95362 0.99493 1.02081 1.23296 0.92634 0.96591 0.93228 1.67770 1.42019 0.99234 1.13779 1.22925 0.91231 0.96750 0.93575 1.20655 0.95035 0.94971 1.06016 1.19827 0.98117 0.92552 0.82967 1.44951 1.60315 1.21837 1.11276 1.16073 0.78724 0.82014 0.83105 1.90899 1.64092 1.51610 1.45166 1.45053 1.60570 1.24913 1.08264 1.21139 0.95253 0.85206 0.96161 1.21468 1.00334 0.98781 0.93119 1.19467 0.95976 0.95104 0.94507 1.21469 1.35252 1.05929 0.94110 0.94437 1.25992 0.95640 1.01093 0.96602 1.70061 1.41935 1.32012 1.15176 0.85694 0.79726 0.78026 0.79452 1.19208 1.21128 1.17066 0.89710 0.91332 0.89280 0.81983 0.80420 0.81982 0.91052 0.90713 0.75607 0.75383 0.92775 0.92528 0.91679 0.91836 0.96096 0.96108 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 9.68 71.24 0.69 -0.46 16 2 C -0.03 -0.30 5.92 -19.67 -0.12 -0.42 16 3 C -0.17 -1.72 9.82 22.36 0.22 -1.51 16 4 C 0.10 1.22 11.18 84.67 0.95 2.16 16 5 N -0.52 -9.04 10.36 -195.84 -2.03 -11.07 16 6 C 0.11 1.79 10.83 84.68 0.92 2.70 16 7 C -0.16 -2.36 5.27 -19.77 -0.10 -2.46 16 8 C 0.19 3.21 5.25 85.63 0.45 3.66 16 9 N -0.73 -13.23 5.55 -482.30 -2.68 -15.91 16 10 C 0.70 18.80 8.57 179.05 1.53 20.33 16 11 O -0.64 -22.85 16.34 -3.98 -0.07 -22.92 16 12 N -0.73 -18.42 5.56 -478.54 -2.66 -21.08 16 13 C 0.15 4.61 5.67 86.38 0.49 5.10 16 14 C -0.10 -3.52 5.27 30.59 0.16 -3.36 16 15 C -0.01 -0.57 4.04 29.84 0.12 -0.45 16 16 C -0.53 -29.93 9.66 25.60 0.25 -29.68 16 17 H 0.04 2.30 7.99 -2.91 -0.02 2.28 16 18 C 0.00 0.20 5.47 84.65 0.46 0.66 16 19 N -0.95 -59.37 13.96 21.45 0.30 -59.07 16 20 Si 0.95 44.29 27.47 68.60 1.88 46.17 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 22 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 23 H -0.25 -10.79 6.54 99.48 0.65 -10.14 16 24 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.07 0.80 6.27 -2.39 -0.01 0.79 16 26 H 0.09 0.56 8.10 -2.39 -0.02 0.54 16 27 H 0.16 0.71 8.06 -2.91 -0.02 0.68 16 28 H 0.18 1.21 8.06 -2.91 -0.02 1.18 16 29 H 0.16 2.20 8.04 -2.91 -0.02 2.18 16 30 H 0.07 1.31 8.02 -2.39 -0.02 1.29 16 31 H 0.07 1.35 6.53 -2.39 -0.02 1.33 16 32 H 0.41 5.49 8.48 -92.71 -0.79 4.70 16 33 H 0.41 7.86 8.49 -92.70 -0.79 7.08 16 34 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 38 H 0.02 0.94 7.20 -2.39 -0.02 0.92 16 39 H 0.02 0.92 7.57 -2.39 -0.02 0.90 16 40 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -74.25 338.44 0.19 -74.05 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -0.57 Total: 13.52 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: 6.02 Total: -3.71 kcal Atomic # 7 Polarization: -100.06 SS G_CDS: -7.07 Total: -107.13 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -0.07 Total: -22.92 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.88 Total: 46.17 kcal Total: -74.25 0.19 -74.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001678788214.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.010 kcal (2) G-P(sol) polarization free energy of solvation -74.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds