Wall clock time and date at job start Mon Mar 30 2020 01:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38626 * 120.75874 * 2 1 4 4 C 1.38562 * 119.35178 * 180.28967 * 3 2 1 5 5 C 1.50696 * 119.54685 * 179.70350 * 4 3 2 6 6 N 1.31519 * 120.90437 * 359.72865 * 4 3 2 7 7 C 1.32721 * 121.64343 * 359.97438 * 6 4 3 8 8 C 1.48168 * 119.72302 * 179.97438 * 7 6 4 9 9 O 1.21519 * 119.99953 * 180.02562 * 8 7 6 10 10 N 1.34771 * 119.99999 * 0.02562 * 8 7 6 11 11 C 1.46503 * 119.99651 * 179.97438 * 10 8 7 12 12 C 1.53007 * 109.46817 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.46909 * 65.00135 * 12 11 10 14 14 C 1.52997 * 109.47100 * 185.00218 * 12 11 10 15 15 N 1.46503 * 109.46990 * 305.00134 * 12 11 10 16 16 C 1.36939 * 119.99496 * 155.00277 * 15 12 11 17 17 H 1.07996 * 120.00234 * 359.97438 * 16 15 12 18 18 C 1.38813 * 119.99613 * 180.02562 * 16 15 12 19 19 N 1.31625 * 119.99995 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00067 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47211 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47421 * 119.99837 * 20 18 16 23 23 H 1.48504 * 109.47323 * 239.99611 * 20 18 16 24 24 C 1.38591 * 120.75287 * 179.77066 * 2 1 3 25 25 H 1.08996 * 109.47568 * 270.22980 * 1 2 3 26 26 H 1.09003 * 109.46629 * 30.22665 * 1 2 3 27 27 H 1.09001 * 109.47375 * 150.22030 * 1 2 3 28 28 H 1.07997 * 120.32384 * 0.02562 * 3 2 1 29 29 H 1.08999 * 109.47164 * 270.02430 * 5 4 3 30 30 H 1.08998 * 109.47256 * 30.02349 * 5 4 3 31 31 H 1.09003 * 109.47140 * 150.02943 * 5 4 3 32 32 H 0.96995 * 120.00301 * 0.02562 * 10 8 7 33 33 H 1.09001 * 109.47399 * 300.00039 * 11 10 8 34 34 H 1.08999 * 109.47442 * 60.00776 * 11 10 8 35 35 H 1.09002 * 109.47161 * 300.00321 * 14 12 11 36 36 H 1.09002 * 109.47480 * 59.99719 * 14 12 11 37 37 H 1.08992 * 109.47371 * 179.97438 * 14 12 11 38 38 H 0.96998 * 120.00148 * 335.00285 * 15 12 11 39 39 H 0.96998 * 119.99668 * 180.02562 * 19 18 16 40 40 H 1.08002 * 120.47417 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1913 0.0000 4 6 3.6011 1.1572 -0.0061 5 6 4.3762 2.4496 -0.0129 6 7 4.2487 0.0125 -0.0065 7 6 3.6082 -1.1499 -0.0007 8 6 4.3805 -2.4143 -0.0020 9 8 3.7992 -3.4814 0.0029 10 7 5.7278 -2.3809 -0.0086 11 6 6.4914 -3.6312 -0.0094 12 6 7.9883 -3.3145 -0.0167 13 1 8.2580 -2.8125 0.9124 14 6 8.7842 -4.6151 -0.1433 15 7 8.2970 -2.4407 -1.1514 16 6 9.3929 -1.6208 -1.1058 17 1 10.0293 -1.6180 -0.2333 18 6 9.6851 -0.7925 -2.1807 19 7 8.9091 -0.7956 -3.2439 20 14 11.1802 0.3254 -2.1190 21 1 11.8829 0.1412 -0.8238 22 1 12.0996 -0.0154 -3.2342 23 1 10.7467 1.7397 -2.2496 24 6 2.2156 -1.1910 0.0048 25 1 -0.3634 0.0041 1.0276 26 1 -0.3633 0.8880 -0.5174 27 1 -0.3634 -0.8919 -0.5104 28 1 1.6937 2.1366 0.0004 29 1 4.5581 2.7587 -1.0422 30 1 3.8023 3.2202 0.5018 31 1 5.3288 2.3046 0.4966 32 1 6.1919 -1.5292 -0.0121 33 1 6.2466 -4.2071 0.8832 34 1 6.2381 -4.2112 -0.8968 35 1 8.5545 -5.2652 0.7009 36 1 8.5144 -5.1172 -1.0724 37 1 9.8505 -4.3895 -0.1490 38 1 7.7252 -2.4430 -1.9349 39 1 9.1135 -0.2170 -3.9952 40 1 1.6958 -2.1377 0.0081 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690596464.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:29 Heat of formation + Delta-G solvation = -4.516855 kcal Electronic energy + Delta-G solvation = -21165.556959 eV Core-core repulsion = 17980.035503 eV Total energy + Delta-G solvation = -3185.521456 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.60279 -38.83026 -36.26847 -34.37424 -33.43483 -32.73148 -31.67641 -28.70359 -28.10043 -27.58916 -26.25063 -23.97662 -23.29763 -21.26952 -20.14138 -19.94497 -17.64014 -17.13238 -16.55251 -15.96235 -15.34580 -15.28885 -14.83608 -14.36579 -14.14931 -13.69745 -13.57148 -13.45939 -13.00866 -12.89104 -12.72638 -12.35444 -12.19306 -12.11384 -12.05961 -11.82948 -11.74054 -11.34292 -10.86011 -10.72344 -10.31140 -10.05395 -9.95634 -9.67920 -9.58728 -9.36499 -8.99858 -8.94403 -8.54814 -6.99044 -5.76317 -3.06373 0.71748 1.17849 2.94071 3.42636 3.47101 3.49083 3.50899 3.94927 4.18018 4.47104 4.58491 4.71995 4.91452 5.01651 5.21864 5.29986 5.37486 5.49556 5.52178 5.52830 5.61315 5.62420 5.65065 5.67653 5.95145 5.98316 6.09668 6.12845 6.15964 6.22034 6.35410 6.59504 6.61512 6.78131 6.86962 7.07277 7.70736 7.77272 8.09551 8.40626 8.56703 9.52688 10.07739 10.43357 11.45777 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015882 B = 0.005012 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.594733 B = 5584.842632 C = 6999.972338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.050 4.050 3 C -0.158 4.158 4 C 0.133 3.867 5 C -0.105 4.105 6 N -0.453 5.453 7 C 0.096 3.904 8 C 0.565 3.435 9 O -0.550 6.550 10 N -0.688 5.688 11 C 0.112 3.888 12 C 0.159 3.841 13 H 0.054 0.946 14 C -0.162 4.162 15 N -0.723 5.723 16 C -0.240 4.240 17 H 0.071 0.929 18 C -0.010 4.010 19 N -0.929 5.929 20 Si 0.905 3.095 21 H -0.281 1.281 22 H -0.293 1.293 23 H -0.292 1.292 24 C -0.125 4.125 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.136 0.864 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.422 0.578 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.039 0.961 36 H 0.049 0.951 37 H 0.058 0.942 38 H 0.385 0.615 39 H 0.254 0.746 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.862 3.456 8.041 17.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.058 4.058 3 C -0.178 4.178 4 C -0.007 4.007 5 C -0.163 4.163 6 N -0.166 5.166 7 C -0.043 4.043 8 C 0.349 3.651 9 O -0.429 6.429 10 N -0.339 5.339 11 C -0.012 4.012 12 C 0.049 3.951 13 H 0.072 0.928 14 C -0.222 4.222 15 N -0.365 5.365 16 C -0.372 4.372 17 H 0.089 0.911 18 C -0.206 4.206 19 N -0.577 5.577 20 Si 0.736 3.264 21 H -0.206 1.206 22 H -0.220 1.220 23 H -0.219 1.219 24 C -0.146 4.146 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.154 0.846 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.260 0.740 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.219 0.781 39 H 0.064 0.936 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -14.155 2.767 8.084 16.534 hybrid contribution 0.040 1.011 -0.448 1.107 sum -14.115 3.778 7.635 16.486 Atomic orbital electron populations 1.20808 0.89862 1.03462 1.02908 1.20295 0.96923 0.92587 0.96017 1.22029 0.94815 0.98736 1.02255 1.21332 0.91056 0.93936 0.94359 1.20751 1.00548 0.91339 1.03635 1.67484 1.40897 0.97526 1.10673 1.21217 0.91581 0.92261 0.99240 1.17872 0.82737 0.87161 0.77361 1.90735 1.70325 1.30022 1.51817 1.45879 1.05238 1.11723 1.71041 1.21784 0.92282 0.85590 1.01585 1.20509 0.89801 0.91729 0.93059 0.92822 1.22359 1.01612 0.98184 1.00090 1.42468 1.31470 1.46029 1.16569 1.19257 1.02379 1.14629 1.00887 0.91081 1.24727 0.98990 1.00356 0.96534 1.69685 1.39179 1.42278 1.06555 0.86153 0.82507 0.80547 0.77165 1.20582 1.21982 1.21911 1.21960 0.93866 0.99366 0.99414 0.90478 0.90949 0.90801 0.84569 0.89968 0.90824 0.89873 0.73963 0.91604 0.91581 0.94187 0.93195 0.92286 0.78069 0.93598 0.83678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.06 36.00 0.36 -0.49 16 2 C -0.05 -0.57 5.91 -104.35 -0.62 -1.19 16 3 C -0.16 -1.76 9.45 -39.32 -0.37 -2.13 16 4 C 0.13 1.82 6.78 -82.61 -0.56 1.26 16 5 C -0.11 -1.17 10.17 36.00 0.37 -0.80 16 6 N -0.45 -7.60 9.45 -6.06 -0.06 -7.66 16 7 C 0.10 1.61 6.75 -83.00 -0.56 1.05 16 8 C 0.56 10.62 7.81 -12.18 -0.10 10.52 16 9 O -0.55 -11.17 16.32 5.35 0.09 -11.09 16 10 N -0.69 -13.01 5.38 -61.14 -0.33 -13.34 16 11 C 0.11 2.03 5.23 -4.04 -0.02 2.01 16 12 C 0.16 3.12 3.05 -67.93 -0.21 2.91 16 13 H 0.05 1.05 8.08 -51.93 -0.42 0.63 16 14 C -0.16 -2.87 9.49 37.16 0.35 -2.52 16 15 N -0.72 -17.62 4.56 -53.42 -0.24 -17.86 16 16 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 17 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 18 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 19 N -0.93 -27.74 13.06 55.49 0.72 -27.02 16 20 Si 0.90 22.10 29.55 -169.99 -5.02 17.07 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 C -0.13 -1.75 9.34 -39.05 -0.36 -2.12 16 25 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 27 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 28 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 31 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.42 8.48 7.47 -40.82 -0.30 8.17 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.39 10.24 7.80 -40.82 -0.32 9.92 16 39 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.15 1.92 7.64 -52.49 -0.40 1.51 16 LS Contribution 343.72 15.07 5.18 5.18 Total: -1.00 -31.77 343.72 -7.68 -39.45 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -6.06 Total: 13.77 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -1.96 Total: 1.50 kcal Atomic # 7 Polarization: -65.98 SS G_CDS: 0.09 Total: -65.88 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.09 Total: -11.09 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.77 -7.68 -39.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690596464.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.931 kcal (2) G-P(sol) polarization free energy of solvation -31.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds