Wall clock time and date at job start Mon Mar 30 2020 01:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38626 * 120.75874 * 2 1 4 4 C 1.38562 * 119.35178 * 180.28967 * 3 2 1 5 5 C 1.50696 * 119.54685 * 179.70350 * 4 3 2 6 6 N 1.31519 * 120.90437 * 359.72865 * 4 3 2 7 7 C 1.32721 * 121.64343 * 359.97438 * 6 4 3 8 8 C 1.48168 * 119.72302 * 179.97438 * 7 6 4 9 9 O 1.21519 * 119.99953 * 180.02562 * 8 7 6 10 10 N 1.34771 * 119.99999 * 0.02562 * 8 7 6 11 11 C 1.46503 * 119.99651 * 179.97438 * 10 8 7 12 12 C 1.53007 * 109.46817 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.46909 * 65.00135 * 12 11 10 14 14 C 1.52997 * 109.47100 * 185.00218 * 12 11 10 15 15 N 1.46503 * 109.46990 * 305.00134 * 12 11 10 16 16 C 1.36939 * 119.99496 * 155.00277 * 15 12 11 17 17 H 1.07996 * 120.00234 * 359.97438 * 16 15 12 18 18 C 1.38813 * 119.99613 * 180.02562 * 16 15 12 19 19 N 1.31625 * 119.99995 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00067 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47211 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47421 * 119.99837 * 20 18 16 23 23 H 1.48504 * 109.47323 * 239.99611 * 20 18 16 24 24 C 1.38591 * 120.75287 * 179.77066 * 2 1 3 25 25 H 1.08996 * 109.47568 * 270.22980 * 1 2 3 26 26 H 1.09003 * 109.46629 * 30.22665 * 1 2 3 27 27 H 1.09001 * 109.47375 * 150.22030 * 1 2 3 28 28 H 1.07997 * 120.32384 * 0.02562 * 3 2 1 29 29 H 1.08999 * 109.47164 * 270.02430 * 5 4 3 30 30 H 1.08998 * 109.47256 * 30.02349 * 5 4 3 31 31 H 1.09003 * 109.47140 * 150.02943 * 5 4 3 32 32 H 0.96995 * 120.00301 * 0.02562 * 10 8 7 33 33 H 1.09001 * 109.47399 * 300.00039 * 11 10 8 34 34 H 1.08999 * 109.47442 * 60.00776 * 11 10 8 35 35 H 1.09002 * 109.47161 * 300.00321 * 14 12 11 36 36 H 1.09002 * 109.47480 * 59.99719 * 14 12 11 37 37 H 1.08992 * 109.47371 * 179.97438 * 14 12 11 38 38 H 0.96998 * 120.00148 * 335.00285 * 15 12 11 39 39 H 0.96998 * 119.99668 * 180.02562 * 19 18 16 40 40 H 1.08002 * 120.47417 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1913 0.0000 4 6 3.6011 1.1572 -0.0061 5 6 4.3762 2.4496 -0.0129 6 7 4.2487 0.0125 -0.0065 7 6 3.6082 -1.1499 -0.0007 8 6 4.3805 -2.4143 -0.0020 9 8 3.7992 -3.4814 0.0029 10 7 5.7278 -2.3809 -0.0086 11 6 6.4914 -3.6312 -0.0094 12 6 7.9883 -3.3145 -0.0167 13 1 8.2580 -2.8125 0.9124 14 6 8.7842 -4.6151 -0.1433 15 7 8.2970 -2.4407 -1.1514 16 6 9.3929 -1.6208 -1.1058 17 1 10.0293 -1.6180 -0.2333 18 6 9.6851 -0.7925 -2.1807 19 7 8.9091 -0.7956 -3.2439 20 14 11.1802 0.3254 -2.1190 21 1 11.8829 0.1412 -0.8238 22 1 12.0996 -0.0154 -3.2342 23 1 10.7467 1.7397 -2.2496 24 6 2.2156 -1.1910 0.0048 25 1 -0.3634 0.0041 1.0276 26 1 -0.3633 0.8880 -0.5174 27 1 -0.3634 -0.8919 -0.5104 28 1 1.6937 2.1366 0.0004 29 1 4.5581 2.7587 -1.0422 30 1 3.8023 3.2202 0.5018 31 1 5.3288 2.3046 0.4966 32 1 6.1919 -1.5292 -0.0121 33 1 6.2466 -4.2071 0.8832 34 1 6.2381 -4.2112 -0.8968 35 1 8.5545 -5.2652 0.7009 36 1 8.5144 -5.1172 -1.0724 37 1 9.8505 -4.3895 -0.1490 38 1 7.7252 -2.4430 -1.9349 39 1 9.1135 -0.2170 -3.9952 40 1 1.6958 -2.1377 0.0081 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690596464.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:28 Heat of formation + Delta-G solvation = -26.230350 kcal Electronic energy + Delta-G solvation = -21166.498527 eV Core-core repulsion = 17980.035503 eV Total energy + Delta-G solvation = -3186.463024 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.73612 -40.19697 -37.93963 -35.46783 -34.98838 -33.95258 -33.34853 -30.58209 -29.03145 -28.42289 -27.60916 -25.79738 -24.74017 -22.25936 -21.72852 -21.29576 -19.41495 -18.64288 -17.76706 -17.02094 -16.88613 -16.66662 -16.38340 -15.75409 -15.64334 -15.17924 -14.93547 -14.55149 -14.12808 -13.95909 -13.73351 -13.67191 -13.50223 -13.40051 -13.09394 -13.09259 -13.00063 -12.80996 -12.58375 -12.50562 -12.13608 -11.73564 -11.66144 -11.41747 -10.98215 -10.53707 -10.48847 -10.19735 -9.91063 -9.02441 -7.90681 -5.20191 -0.37929 0.19840 1.49262 1.49522 1.59354 1.65478 2.12251 2.58109 2.79520 3.07020 3.43707 3.63950 3.69543 3.87341 3.95217 4.00920 4.03326 4.36102 4.37718 4.50869 4.60305 4.62432 4.70599 4.73801 4.78533 4.81517 4.82376 4.97481 5.05603 5.13952 5.23859 5.25765 5.27557 5.35578 5.55934 5.56591 5.68288 6.29353 6.42096 6.84145 7.10817 7.36371 8.08084 8.32915 9.32587 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015882 B = 0.005012 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.594733 B = 5584.842632 C = 6999.972338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.045 4.045 3 C -0.142 4.142 4 C 0.113 3.887 5 C -0.103 4.103 6 N -0.490 5.490 7 C 0.061 3.939 8 C 0.561 3.439 9 O -0.573 6.573 10 N -0.693 5.693 11 C 0.119 3.881 12 C 0.158 3.842 13 H 0.057 0.943 14 C -0.153 4.153 15 N -0.732 5.732 16 C -0.235 4.235 17 H 0.078 0.922 18 C -0.071 4.071 19 N -0.968 5.968 20 Si 0.969 3.031 21 H -0.265 1.265 22 H -0.298 1.298 23 H -0.295 1.295 24 C -0.131 4.131 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.179 0.821 29 H 0.080 0.920 30 H 0.111 0.889 31 H 0.064 0.936 32 H 0.415 0.585 33 H 0.087 0.913 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.043 0.957 37 H 0.046 0.954 38 H 0.371 0.629 39 H 0.248 0.752 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.225 4.649 9.329 19.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.053 4.053 3 C -0.161 4.161 4 C -0.027 4.027 5 C -0.160 4.160 6 N -0.203 5.203 7 C -0.076 4.076 8 C 0.347 3.653 9 O -0.454 6.454 10 N -0.342 5.342 11 C -0.005 4.005 12 C 0.050 3.950 13 H 0.075 0.925 14 C -0.213 4.213 15 N -0.373 5.373 16 C -0.366 4.366 17 H 0.096 0.904 18 C -0.263 4.263 19 N -0.619 5.619 20 Si 0.799 3.201 21 H -0.190 1.190 22 H -0.225 1.225 23 H -0.222 1.222 24 C -0.152 4.152 25 H 0.112 0.888 26 H 0.113 0.887 27 H 0.095 0.905 28 H 0.197 0.803 29 H 0.099 0.901 30 H 0.129 0.871 31 H 0.083 0.917 32 H 0.252 0.748 33 H 0.105 0.895 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.203 0.797 39 H 0.057 0.943 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -15.509 3.923 9.425 18.568 hybrid contribution 0.370 0.647 -0.781 1.080 sum -15.139 4.570 8.644 18.022 Atomic orbital electron populations 1.20915 0.86652 1.04799 1.04359 1.20765 0.99014 0.91469 0.94078 1.22475 0.93749 1.00471 0.99446 1.21888 0.92761 0.93656 0.94383 1.20825 1.00125 0.91248 1.03810 1.67386 1.42333 0.98423 1.12171 1.21020 0.92505 0.91565 1.02473 1.18287 0.82610 0.87981 0.76457 1.90694 1.70607 1.31068 1.53035 1.45918 1.05576 1.11454 1.71295 1.21731 0.91173 0.85555 1.02062 1.20695 0.91024 0.91898 0.91382 0.92491 1.22214 1.00247 0.97421 1.01410 1.42603 1.30690 1.46715 1.17315 1.19619 1.02467 1.13936 1.00598 0.90387 1.25478 1.01888 1.02411 0.96547 1.69846 1.41172 1.43569 1.07291 0.85139 0.79294 0.78325 0.77379 1.18982 1.22543 1.22225 1.22115 0.92877 1.00834 0.99356 0.88765 0.88684 0.90454 0.80318 0.90107 0.87052 0.91715 0.74782 0.89494 0.92587 0.90580 0.93766 0.93478 0.79718 0.94284 0.83567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 10.06 71.23 0.72 -0.54 16 2 C -0.05 -0.92 5.91 -19.69 -0.12 -1.03 16 3 C -0.14 -2.73 9.45 22.44 0.21 -2.52 16 4 C 0.11 2.98 6.78 42.68 0.29 3.27 16 5 C -0.10 -2.15 10.17 71.23 0.72 -1.43 16 6 N -0.49 -16.81 9.45 -173.08 -1.64 -18.45 16 7 C 0.06 2.13 6.75 41.91 0.28 2.41 16 8 C 0.56 21.88 7.81 86.88 0.68 22.56 16 9 O -0.57 -23.94 16.32 -3.78 -0.06 -24.01 16 10 N -0.69 -27.12 5.38 -465.64 -2.50 -29.63 16 11 C 0.12 4.34 5.23 86.38 0.45 4.79 16 12 C 0.16 6.19 3.05 44.99 0.14 6.32 16 13 H 0.06 2.20 8.08 -2.39 -0.02 2.18 16 14 C -0.15 -5.25 9.49 71.98 0.68 -4.57 16 15 N -0.73 -36.34 4.56 -322.93 -1.47 -37.82 16 16 C -0.23 -12.73 9.93 84.03 0.83 -11.89 16 17 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 18 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 19 N -0.97 -59.33 13.06 21.65 0.28 -59.05 16 20 Si 0.97 45.91 29.55 68.60 2.03 47.94 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 22 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 23 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 24 C -0.13 -3.62 9.34 22.61 0.21 -3.41 16 25 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.09 0.70 8.10 -2.39 -0.02 0.68 16 27 H 0.08 0.86 8.10 -2.39 -0.02 0.84 16 28 H 0.18 1.87 8.06 -2.91 -0.02 1.84 16 29 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.11 1.42 8.08 -2.39 -0.02 1.40 16 31 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.41 17.44 7.47 -92.71 -0.69 16.75 16 33 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 34 H 0.06 2.15 8.14 -2.39 -0.02 2.14 16 35 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.37 20.40 7.80 -92.71 -0.72 19.68 16 39 H 0.25 14.84 8.31 -92.71 -0.77 14.06 16 40 H 0.15 3.88 7.64 -2.91 -0.02 3.86 16 Total: -1.00 -70.78 343.72 1.84 -68.94 By element: Atomic # 1 Polarization: 42.02 SS G_CDS: -0.37 Total: 41.65 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 5.57 Total: 10.41 kcal Atomic # 7 Polarization: -139.61 SS G_CDS: -5.33 Total: -144.94 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.06 Total: -24.01 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -70.78 1.84 -68.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690596464.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.708 kcal (2) G-P(sol) polarization free energy of solvation -70.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds