Wall clock time and date at job start Mon Mar 30 2020 01:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38623 * 120.75649 * 2 1 4 4 C 1.38564 * 119.35063 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.54795 * 180.02562 * 4 3 2 6 6 N 1.31519 * 120.90204 * 359.97438 * 4 3 2 7 7 C 1.32722 * 121.64344 * 359.70324 * 6 4 3 8 8 C 1.48173 * 119.72240 * 180.31596 * 7 6 4 9 9 O 1.21508 * 119.99812 * 180.26928 * 8 7 6 10 10 N 1.34777 * 120.00159 * 0.26229 * 8 7 6 11 11 C 1.46501 * 120.00123 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.46967 * 180.02562 * 11 10 8 13 13 H 1.09009 * 109.47396 * 294.99828 * 12 11 10 14 14 C 1.52999 * 109.47108 * 175.00205 * 12 11 10 15 15 N 1.46498 * 109.47531 * 54.99824 * 12 11 10 16 16 C 1.36942 * 119.99935 * 204.99798 * 15 12 11 17 17 H 1.07994 * 119.99968 * 0.02562 * 16 15 12 18 18 C 1.38818 * 119.99656 * 180.02562 * 16 15 12 19 19 N 1.31616 * 119.99784 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99974 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46977 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47294 * 119.99536 * 20 18 16 23 23 H 1.48501 * 109.47023 * 239.99993 * 20 18 16 24 24 C 1.38592 * 120.75290 * 180.02562 * 2 1 3 25 25 H 1.08993 * 109.47480 * 269.98187 * 1 2 3 26 26 H 1.09002 * 109.46992 * 29.97891 * 1 2 3 27 27 H 1.09003 * 109.47369 * 149.97627 * 1 2 3 28 28 H 1.08004 * 120.32606 * 359.97438 * 3 2 1 29 29 H 1.09000 * 109.46755 * 89.99868 * 5 4 3 30 30 H 1.08991 * 109.47251 * 210.00088 * 5 4 3 31 31 H 1.09003 * 109.46668 * 330.00282 * 5 4 3 32 32 H 0.97007 * 120.00030 * 0.02562 * 10 8 7 33 33 H 1.09000 * 109.46872 * 300.00420 * 11 10 8 34 34 H 1.08992 * 109.46654 * 60.00532 * 11 10 8 35 35 H 1.08995 * 109.47090 * 299.99652 * 14 12 11 36 36 H 1.09005 * 109.46981 * 59.99539 * 14 12 11 37 37 H 1.09004 * 109.47477 * 179.97438 * 14 12 11 38 38 H 0.97001 * 119.99824 * 25.00702 * 15 12 11 39 39 H 0.97003 * 119.99906 * 180.02562 * 19 18 16 40 40 H 1.08002 * 120.46872 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1913 0.0000 4 6 3.6012 1.1573 -0.0005 5 6 4.3763 2.4497 0.0000 6 7 4.2487 0.0125 -0.0005 7 6 3.6081 -1.1498 0.0058 8 6 4.3805 -2.4143 0.0126 9 8 3.7992 -3.4813 0.0135 10 7 5.7279 -2.3810 0.0177 11 6 6.4915 -3.6312 0.0239 12 6 7.9883 -3.3144 0.0294 13 1 8.2578 -2.8165 -0.9021 14 6 8.7842 -4.6144 0.1615 15 7 8.2974 -2.4355 1.1600 16 6 9.3932 -1.6158 1.1104 17 1 10.0294 -1.6170 0.2377 18 6 9.6863 -0.7834 2.1820 19 7 8.9107 -0.7818 3.2453 20 14 11.1807 0.3353 2.1142 21 1 11.8824 0.1459 0.8191 22 1 10.7464 1.7497 2.2401 23 1 12.1018 -0.0010 3.2294 24 6 2.2157 -1.1910 -0.0005 25 1 -0.3634 -0.0003 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3634 -0.8898 -0.5142 28 1 1.6937 2.1366 -0.0004 29 1 4.5635 2.7605 1.0279 30 1 5.3261 2.3039 -0.5142 31 1 3.7997 3.2193 -0.5130 32 1 6.1920 -1.5291 0.0172 33 1 6.2389 -4.2068 0.9143 34 1 6.2459 -4.2112 -0.8656 35 1 8.5148 -5.1123 1.0929 36 1 8.5542 -5.2683 -0.6798 37 1 9.8507 -4.3888 0.1650 38 1 7.7258 -2.4344 1.9437 39 1 9.1153 -0.1999 3.9940 40 1 1.6958 -2.1377 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690596465.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:31 Heat of formation + Delta-G solvation = -4.523798 kcal Electronic energy + Delta-G solvation = -21165.419121 eV Core-core repulsion = 17979.897364 eV Total energy + Delta-G solvation = -3185.521757 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.60323 -38.83122 -36.26945 -34.37380 -33.43481 -32.73160 -31.67687 -28.70411 -28.10056 -27.58919 -26.25039 -23.97660 -23.29753 -21.26962 -20.14091 -19.94456 -17.64028 -17.13272 -16.55281 -15.96246 -15.34751 -15.28955 -14.82843 -14.37715 -14.13931 -13.69857 -13.57291 -13.45958 -13.00858 -12.89121 -12.72828 -12.35341 -12.19465 -12.11280 -12.05975 -11.83103 -11.74081 -11.34221 -10.86086 -10.72342 -10.31162 -10.05381 -9.95639 -9.67953 -9.58569 -9.36668 -8.99867 -8.94451 -8.54773 -6.99113 -5.76378 -3.06401 0.71796 1.17869 2.94123 3.42622 3.47093 3.49066 3.50853 3.94953 4.18019 4.47055 4.58450 4.71837 4.91436 5.01642 5.21530 5.30833 5.37191 5.49537 5.52242 5.52814 5.61292 5.62432 5.65071 5.67613 5.95124 5.98323 6.09675 6.12846 6.15925 6.22069 6.35415 6.59494 6.61514 6.78133 6.86987 7.07232 7.70752 7.77267 8.09537 8.40552 8.56708 9.52627 10.07708 10.43318 11.45723 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015881 B = 0.005012 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.737591 B = 5585.004456 C = 6999.931996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.050 4.050 3 C -0.158 4.158 4 C 0.133 3.867 5 C -0.105 4.105 6 N -0.453 5.453 7 C 0.096 3.904 8 C 0.565 3.435 9 O -0.550 6.550 10 N -0.688 5.688 11 C 0.112 3.888 12 C 0.159 3.841 13 H 0.054 0.946 14 C -0.162 4.162 15 N -0.723 5.723 16 C -0.241 4.241 17 H 0.071 0.929 18 C -0.010 4.010 19 N -0.929 5.929 20 Si 0.905 3.095 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.293 1.293 24 C -0.125 4.125 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.136 0.864 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.422 0.578 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.049 0.951 36 H 0.039 0.961 37 H 0.058 0.942 38 H 0.385 0.615 39 H 0.254 0.746 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.868 3.424 -7.992 17.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.058 4.058 3 C -0.178 4.178 4 C -0.007 4.007 5 C -0.163 4.163 6 N -0.166 5.166 7 C -0.043 4.043 8 C 0.349 3.651 9 O -0.429 6.429 10 N -0.339 5.339 11 C -0.012 4.012 12 C 0.049 3.951 13 H 0.072 0.928 14 C -0.222 4.222 15 N -0.365 5.365 16 C -0.372 4.372 17 H 0.089 0.911 18 C -0.206 4.206 19 N -0.577 5.577 20 Si 0.736 3.264 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.220 1.220 24 C -0.146 4.146 25 H 0.096 0.904 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.154 0.846 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.260 0.740 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.219 0.781 39 H 0.064 0.936 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -14.161 2.734 -8.044 16.514 hybrid contribution 0.041 1.012 0.461 1.113 sum -14.120 3.746 -7.583 16.459 Atomic orbital electron populations 1.20810 0.89860 1.03350 1.03019 1.20296 0.96922 0.92589 0.96012 1.22030 0.94815 0.98734 1.02261 1.21335 0.91056 0.93936 0.94355 1.20751 1.00537 0.91339 1.03641 1.67483 1.40891 0.97527 1.10687 1.21215 0.91582 0.92261 0.99235 1.17871 0.82736 0.87159 0.77361 1.90732 1.70322 1.30028 1.51809 1.45883 1.05237 1.11723 1.71049 1.21780 0.92280 0.85588 1.01589 1.20507 0.89801 0.91681 0.93108 0.92822 1.22360 1.01608 0.98175 1.00100 1.42468 1.31485 1.45777 1.16806 1.19258 1.02378 1.14534 1.00987 0.91080 1.24726 0.98994 1.00343 0.96537 1.69682 1.39181 1.42117 1.06715 0.86154 0.82503 0.80557 0.77166 1.20579 1.21903 1.21985 1.21957 0.93866 0.99364 0.99425 0.90395 0.90989 0.90841 0.84568 0.89962 0.89875 0.90829 0.73962 0.91589 0.91599 0.93191 0.94192 0.92289 0.78073 0.93597 0.83678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.06 36.01 0.36 -0.49 16 2 C -0.05 -0.57 5.91 -104.35 -0.62 -1.19 16 3 C -0.16 -1.76 9.45 -39.32 -0.37 -2.13 16 4 C 0.13 1.82 6.78 -82.60 -0.56 1.26 16 5 C -0.11 -1.17 10.17 36.01 0.37 -0.80 16 6 N -0.45 -7.60 9.45 -6.06 -0.06 -7.66 16 7 C 0.10 1.61 6.75 -83.01 -0.56 1.05 16 8 C 0.56 10.62 7.81 -12.18 -0.10 10.52 16 9 O -0.55 -11.17 16.32 5.36 0.09 -11.08 16 10 N -0.69 -13.02 5.38 -61.15 -0.33 -13.35 16 11 C 0.11 2.03 5.23 -4.04 -0.02 2.01 16 12 C 0.16 3.12 3.05 -67.93 -0.21 2.91 16 13 H 0.05 1.05 8.08 -51.92 -0.42 0.63 16 14 C -0.16 -2.87 9.49 37.16 0.35 -2.52 16 15 N -0.72 -17.62 4.56 -53.43 -0.24 -17.86 16 16 C -0.24 -6.48 9.93 -15.05 -0.15 -6.63 16 17 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 18 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 19 N -0.93 -27.73 13.06 55.49 0.72 -27.01 16 20 Si 0.90 22.09 29.55 -169.99 -5.02 17.07 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 C -0.13 -1.75 9.34 -39.05 -0.36 -2.12 16 25 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 27 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 28 H 0.14 1.07 8.06 -52.48 -0.42 0.64 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 32 H 0.42 8.48 7.47 -40.82 -0.30 8.17 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.39 10.23 7.80 -40.82 -0.32 9.91 16 39 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.15 1.92 7.64 -52.49 -0.40 1.51 16 LS Contribution 343.72 15.07 5.18 5.18 Total: -1.00 -31.76 343.72 -7.68 -39.44 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -6.06 Total: 13.77 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -1.96 Total: 1.50 kcal Atomic # 7 Polarization: -65.97 SS G_CDS: 0.09 Total: -65.87 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.09 Total: -11.08 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.76 -7.68 -39.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690596465.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.916 kcal (2) G-P(sol) polarization free energy of solvation -31.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds