Wall clock time and date at job start Mon Mar 30 2020 01:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38623 * 120.75649 * 2 1 4 4 C 1.38564 * 119.35063 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.54795 * 180.02562 * 4 3 2 6 6 N 1.31519 * 120.90204 * 359.97438 * 4 3 2 7 7 C 1.32722 * 121.64344 * 359.70324 * 6 4 3 8 8 C 1.48173 * 119.72240 * 180.31596 * 7 6 4 9 9 O 1.21508 * 119.99812 * 180.26928 * 8 7 6 10 10 N 1.34777 * 120.00159 * 0.26229 * 8 7 6 11 11 C 1.46501 * 120.00123 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.46967 * 180.02562 * 11 10 8 13 13 H 1.09009 * 109.47396 * 294.99828 * 12 11 10 14 14 C 1.52999 * 109.47108 * 175.00205 * 12 11 10 15 15 N 1.46498 * 109.47531 * 54.99824 * 12 11 10 16 16 C 1.36942 * 119.99935 * 204.99798 * 15 12 11 17 17 H 1.07994 * 119.99968 * 0.02562 * 16 15 12 18 18 C 1.38818 * 119.99656 * 180.02562 * 16 15 12 19 19 N 1.31616 * 119.99784 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99974 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46977 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47294 * 119.99536 * 20 18 16 23 23 H 1.48501 * 109.47023 * 239.99993 * 20 18 16 24 24 C 1.38592 * 120.75290 * 180.02562 * 2 1 3 25 25 H 1.08993 * 109.47480 * 269.98187 * 1 2 3 26 26 H 1.09002 * 109.46992 * 29.97891 * 1 2 3 27 27 H 1.09003 * 109.47369 * 149.97627 * 1 2 3 28 28 H 1.08004 * 120.32606 * 359.97438 * 3 2 1 29 29 H 1.09000 * 109.46755 * 89.99868 * 5 4 3 30 30 H 1.08991 * 109.47251 * 210.00088 * 5 4 3 31 31 H 1.09003 * 109.46668 * 330.00282 * 5 4 3 32 32 H 0.97007 * 120.00030 * 0.02562 * 10 8 7 33 33 H 1.09000 * 109.46872 * 300.00420 * 11 10 8 34 34 H 1.08992 * 109.46654 * 60.00532 * 11 10 8 35 35 H 1.08995 * 109.47090 * 299.99652 * 14 12 11 36 36 H 1.09005 * 109.46981 * 59.99539 * 14 12 11 37 37 H 1.09004 * 109.47477 * 179.97438 * 14 12 11 38 38 H 0.97001 * 119.99824 * 25.00702 * 15 12 11 39 39 H 0.97003 * 119.99906 * 180.02562 * 19 18 16 40 40 H 1.08002 * 120.46872 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1913 0.0000 4 6 3.6012 1.1573 -0.0005 5 6 4.3763 2.4497 0.0000 6 7 4.2487 0.0125 -0.0005 7 6 3.6081 -1.1498 0.0058 8 6 4.3805 -2.4143 0.0126 9 8 3.7992 -3.4813 0.0135 10 7 5.7279 -2.3810 0.0177 11 6 6.4915 -3.6312 0.0239 12 6 7.9883 -3.3144 0.0294 13 1 8.2578 -2.8165 -0.9021 14 6 8.7842 -4.6144 0.1615 15 7 8.2974 -2.4355 1.1600 16 6 9.3932 -1.6158 1.1104 17 1 10.0294 -1.6170 0.2377 18 6 9.6863 -0.7834 2.1820 19 7 8.9107 -0.7818 3.2453 20 14 11.1807 0.3353 2.1142 21 1 11.8824 0.1459 0.8191 22 1 10.7464 1.7497 2.2401 23 1 12.1018 -0.0010 3.2294 24 6 2.2157 -1.1910 -0.0005 25 1 -0.3634 -0.0003 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3634 -0.8898 -0.5142 28 1 1.6937 2.1366 -0.0004 29 1 4.5635 2.7605 1.0279 30 1 5.3261 2.3039 -0.5142 31 1 3.7997 3.2193 -0.5130 32 1 6.1920 -1.5291 0.0172 33 1 6.2389 -4.2068 0.9143 34 1 6.2459 -4.2112 -0.8656 35 1 8.5148 -5.1123 1.0929 36 1 8.5542 -5.2683 -0.6798 37 1 9.8507 -4.3888 0.1650 38 1 7.7258 -2.4344 1.9437 39 1 9.1153 -0.1999 3.9940 40 1 1.6958 -2.1377 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690596465.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:31 Heat of formation + Delta-G solvation = -26.227891 kcal Electronic energy + Delta-G solvation = -21166.360281 eV Core-core repulsion = 17979.897364 eV Total energy + Delta-G solvation = -3186.462917 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.73666 -40.19786 -37.94061 -35.46752 -34.98826 -33.95274 -33.34877 -30.58242 -29.03157 -28.42269 -27.60907 -25.79728 -24.73999 -22.25935 -21.72813 -21.29546 -19.41524 -18.64297 -17.76693 -17.01684 -16.89358 -16.66647 -16.37920 -15.76049 -15.63851 -15.17950 -14.93363 -14.55272 -14.13159 -13.96016 -13.73351 -13.67192 -13.50325 -13.39772 -13.09463 -13.09203 -13.00013 -12.81044 -12.58101 -12.50523 -12.13624 -11.73596 -11.66160 -11.41735 -10.98238 -10.52163 -10.50575 -10.19725 -9.91061 -9.02486 -7.90718 -5.20197 -0.37891 0.19817 1.49224 1.49546 1.59337 1.65517 2.12246 2.58087 2.79527 3.07029 3.43690 3.63957 3.69548 3.87309 3.95259 4.00964 4.03332 4.36112 4.37749 4.50904 4.60315 4.62505 4.70634 4.74111 4.77681 4.81799 4.82449 4.97488 5.05538 5.13903 5.23876 5.25769 5.27627 5.35585 5.55958 5.56531 5.68289 6.29306 6.42089 6.84116 7.10814 7.36335 8.08067 8.32901 9.32555 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015881 B = 0.005012 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.737591 B = 5585.004456 C = 6999.931996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.046 4.046 3 C -0.142 4.142 4 C 0.113 3.887 5 C -0.103 4.103 6 N -0.489 5.489 7 C 0.061 3.939 8 C 0.561 3.439 9 O -0.573 6.573 10 N -0.693 5.693 11 C 0.119 3.881 12 C 0.158 3.842 13 H 0.057 0.943 14 C -0.153 4.153 15 N -0.732 5.732 16 C -0.235 4.235 17 H 0.078 0.922 18 C -0.071 4.071 19 N -0.968 5.968 20 Si 0.969 3.031 21 H -0.266 1.266 22 H -0.295 1.295 23 H -0.298 1.298 24 C -0.131 4.131 25 H 0.090 0.910 26 H 0.097 0.903 27 H 0.079 0.921 28 H 0.180 0.820 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.111 0.889 32 H 0.415 0.585 33 H 0.056 0.944 34 H 0.087 0.913 35 H 0.043 0.957 36 H 0.075 0.925 37 H 0.046 0.954 38 H 0.371 0.629 39 H 0.248 0.752 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.230 4.612 -9.276 19.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.053 4.053 3 C -0.161 4.161 4 C -0.027 4.027 5 C -0.160 4.160 6 N -0.203 5.203 7 C -0.076 4.076 8 C 0.347 3.653 9 O -0.454 6.454 10 N -0.343 5.343 11 C -0.005 4.005 12 C 0.050 3.950 13 H 0.075 0.925 14 C -0.213 4.213 15 N -0.373 5.373 16 C -0.366 4.366 17 H 0.096 0.904 18 C -0.263 4.263 19 N -0.619 5.619 20 Si 0.799 3.201 21 H -0.190 1.190 22 H -0.222 1.222 23 H -0.225 1.225 24 C -0.152 4.152 25 H 0.108 0.892 26 H 0.115 0.885 27 H 0.098 0.902 28 H 0.197 0.803 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.129 0.871 32 H 0.252 0.748 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.062 0.938 36 H 0.094 0.906 37 H 0.065 0.935 38 H 0.203 0.797 39 H 0.057 0.943 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -15.515 3.886 -9.381 18.542 hybrid contribution 0.371 0.649 0.794 1.091 sum -15.143 4.535 -8.587 17.990 Atomic orbital electron populations 1.20917 0.86651 1.04952 1.04208 1.20765 0.99013 0.91470 0.94083 1.22478 0.93752 1.00473 0.99443 1.21891 0.92762 0.93657 0.94382 1.20826 1.00133 0.91244 1.03802 1.67385 1.42323 0.98422 1.12177 1.21019 0.92507 0.91568 1.02473 1.18287 0.82609 0.87979 0.76457 1.90691 1.70604 1.31073 1.53027 1.45923 1.05574 1.11454 1.71303 1.21727 0.91171 0.85560 1.02056 1.20693 0.91024 0.91837 0.91444 0.92495 1.22216 1.00246 0.97426 1.01406 1.42603 1.30706 1.46474 1.17539 1.19620 1.02467 1.13850 1.00694 0.90390 1.25477 1.01891 1.02395 0.96552 1.69843 1.41171 1.43396 1.07461 0.85140 0.79290 0.78337 0.77378 1.18984 1.22212 1.22546 1.22114 0.92878 1.00836 0.99353 0.89188 0.88476 0.90244 0.80313 0.90112 0.91707 0.87053 0.74781 0.92595 0.89492 0.93760 0.90587 0.93481 0.79720 0.94281 0.83563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 10.06 71.24 0.72 -0.54 16 2 C -0.05 -0.92 5.91 -19.69 -0.12 -1.04 16 3 C -0.14 -2.73 9.45 22.44 0.21 -2.52 16 4 C 0.11 2.98 6.78 42.68 0.29 3.27 16 5 C -0.10 -2.15 10.17 71.24 0.72 -1.43 16 6 N -0.49 -16.80 9.45 -173.08 -1.64 -18.44 16 7 C 0.06 2.13 6.75 41.91 0.28 2.41 16 8 C 0.56 21.88 7.81 86.88 0.68 22.56 16 9 O -0.57 -23.94 16.32 -3.74 -0.06 -24.00 16 10 N -0.69 -27.13 5.38 -465.68 -2.50 -29.63 16 11 C 0.12 4.35 5.23 86.38 0.45 4.80 16 12 C 0.16 6.19 3.05 44.99 0.14 6.32 16 13 H 0.06 2.20 8.08 -2.38 -0.02 2.18 16 14 C -0.15 -5.25 9.49 71.98 0.68 -4.57 16 15 N -0.73 -36.34 4.56 -322.94 -1.47 -37.81 16 16 C -0.23 -12.73 9.93 84.03 0.83 -11.90 16 17 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 18 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 19 N -0.97 -59.31 13.06 21.65 0.28 -59.03 16 20 Si 0.97 45.90 29.55 68.60 2.03 47.93 16 21 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 22 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 23 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 24 C -0.13 -3.62 9.34 22.61 0.21 -3.41 16 25 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.10 0.66 8.10 -2.39 -0.02 0.64 16 27 H 0.08 0.84 8.10 -2.39 -0.02 0.82 16 28 H 0.18 1.87 8.06 -2.91 -0.02 1.84 16 29 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.11 1.42 8.08 -2.39 -0.02 1.40 16 32 H 0.41 17.44 7.47 -92.70 -0.69 16.75 16 33 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 35 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 37 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.37 20.40 7.80 -92.71 -0.72 19.68 16 39 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 40 H 0.15 3.88 7.64 -2.91 -0.02 3.86 16 Total: -1.00 -70.75 343.72 1.84 -68.91 By element: Atomic # 1 Polarization: 42.02 SS G_CDS: -0.37 Total: 41.65 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 5.57 Total: 10.41 kcal Atomic # 7 Polarization: -139.58 SS G_CDS: -5.33 Total: -144.91 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.06 Total: -24.00 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -70.75 1.84 -68.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690596465.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.685 kcal (2) G-P(sol) polarization free energy of solvation -70.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds