Wall clock time and date at job start Mon Mar 30 2020 02:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38172 * 120.49609 * 2 1 4 4 N 1.31805 * 120.88934 * 180.02562 * 3 2 1 5 5 C 1.31821 * 122.04947 * 359.97438 * 4 3 2 6 6 C 1.38125 * 120.90166 * 0.02562 * 5 4 3 7 7 C 1.39794 * 120.50174 * 180.02562 * 2 1 3 8 8 C 1.48151 * 120.92200 * 0.02562 * 7 2 1 9 9 O 1.21520 * 120.00018 * 353.89927 * 8 7 2 10 10 N 1.34773 * 120.00194 * 173.90280 * 8 7 2 11 11 C 1.46503 * 120.00087 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.47023 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.47218 * 179.97438 * 12 11 10 14 14 H 1.08998 * 109.46828 * 304.99911 * 13 12 11 15 15 C 1.52994 * 109.47393 * 184.99688 * 13 12 11 16 16 N 1.46503 * 109.46859 * 64.99401 * 13 12 11 17 17 C 1.36939 * 119.99832 * 205.00055 * 16 13 12 18 18 H 1.08001 * 120.00180 * 0.02562 * 17 16 13 19 19 C 1.38810 * 120.00075 * 180.02562 * 17 16 13 20 20 N 1.31620 * 119.99829 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00149 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47014 * 90.00079 * 21 19 17 23 23 H 1.48500 * 109.47133 * 210.00137 * 21 19 17 24 24 H 1.48500 * 109.46757 * 330.00385 * 21 19 17 25 25 H 1.09004 * 109.47271 * 263.65001 * 1 2 3 26 26 H 1.09001 * 109.47409 * 23.64553 * 1 2 3 27 27 H 1.08997 * 109.46828 * 143.64974 * 1 2 3 28 28 H 1.07996 * 119.55522 * 0.03793 * 3 2 1 29 29 H 1.08003 * 119.55098 * 179.97438 * 5 4 3 30 30 H 1.07996 * 120.49928 * 180.02562 * 6 5 4 31 31 H 0.96998 * 119.99972 * 359.97438 * 10 8 7 32 32 H 1.09002 * 109.46947 * 299.99873 * 11 10 8 33 33 H 1.08997 * 109.47178 * 59.99273 * 11 10 8 34 34 H 1.09002 * 109.46992 * 299.99645 * 12 11 10 35 35 H 1.08997 * 109.47900 * 59.99515 * 12 11 10 36 36 H 1.09006 * 109.47081 * 299.99725 * 15 13 12 37 37 H 1.09001 * 109.47254 * 59.99948 * 15 13 12 38 38 H 1.08998 * 109.47570 * 180.02562 * 15 13 12 39 39 H 0.97000 * 120.00226 * 25.00814 * 16 13 12 40 40 H 0.97003 * 119.99602 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1906 0.0000 4 7 3.5262 1.1996 -0.0005 5 6 4.2334 0.0871 -0.0005 6 6 3.6137 -1.1473 -0.0006 7 6 2.2166 -1.2045 -0.0005 8 6 1.5079 -2.5055 -0.0017 9 8 0.2983 -2.5387 0.1097 10 7 2.2048 -3.6524 -0.1262 11 6 1.5040 -4.9389 -0.1279 12 6 2.5197 -6.0728 -0.2807 13 6 1.7879 -7.4164 -0.2818 14 1 1.1772 -7.4982 0.6173 15 6 2.8104 -8.5541 -0.3091 16 7 0.9287 -7.5035 -1.4653 17 6 -0.1724 -8.3175 -1.4536 18 1 -0.4076 -8.8951 -0.5718 19 6 -0.9862 -8.4005 -2.5750 20 7 -0.6992 -7.6970 -3.6498 21 14 -2.4878 -9.5115 -2.5593 22 1 -3.6634 -8.7480 -2.0691 23 1 -2.7550 -10.0022 -3.9352 24 1 -2.2388 -10.6676 -1.6611 25 1 -0.3634 -0.1137 1.0214 26 1 -0.3634 0.9414 -0.4122 27 1 -0.3633 -0.8277 -0.6091 28 1 1.6691 2.1263 0.0006 29 1 5.3121 0.1416 -0.0014 30 1 4.1995 -2.0546 -0.0002 31 1 3.1703 -3.6259 -0.2154 32 1 0.9638 -5.0596 0.8112 33 1 0.7990 -4.9675 -0.9587 34 1 3.0602 -5.9522 -1.2195 35 1 3.2244 -6.0440 0.5504 36 1 3.4211 -8.4723 -1.2083 37 1 3.4497 -8.4894 0.5714 38 1 2.2891 -9.5114 -0.3104 39 1 1.1398 -6.9846 -2.2571 40 1 -1.2678 -7.7552 -4.4336 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690841656.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:47 Heat of formation + Delta-G solvation = 1.208626 kcal Electronic energy + Delta-G solvation = -20826.124634 eV Core-core repulsion = 17640.851453 eV Total energy + Delta-G solvation = -3185.273181 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.87116 -39.06811 -36.66799 -34.67167 -33.53985 -32.64682 -31.98012 -29.36318 -28.24366 -27.37070 -24.96265 -23.82867 -22.94269 -21.99055 -20.88249 -19.81815 -18.14819 -17.20286 -16.90403 -15.61941 -15.54923 -15.47241 -15.28060 -14.90025 -14.33550 -13.84967 -13.65569 -13.61614 -13.50938 -13.02288 -12.76828 -12.53276 -12.45899 -12.05769 -11.77305 -11.56861 -11.13334 -10.94655 -10.76340 -10.65822 -10.37113 -10.23038 -10.04613 -9.97279 -9.65363 -9.43627 -9.20668 -8.94846 -8.86645 -6.96714 -5.76101 -3.05026 0.52526 0.81268 2.84632 3.10005 3.44851 3.49951 3.51266 3.62289 4.14013 4.40910 4.50560 4.59725 4.60115 4.74634 5.10129 5.22941 5.34811 5.38761 5.47421 5.53806 5.57263 5.64161 5.67061 5.83644 5.89047 6.02050 6.13871 6.19775 6.30032 6.34706 6.38517 6.45719 6.60231 6.65806 6.83466 7.03539 7.48698 7.63429 7.71070 8.18446 8.42164 9.53650 10.09784 10.44319 11.46490 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022972 B = 0.003555 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.560521 B = 7874.231697 C = 8703.632652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.076 4.076 3 C 0.092 3.908 4 N -0.469 5.469 5 C 0.084 3.916 6 C -0.138 4.138 7 C -0.090 4.090 8 C 0.550 3.450 9 O -0.519 6.519 10 N -0.719 5.719 11 C 0.121 3.879 12 C -0.133 4.133 13 C 0.175 3.825 14 H 0.049 0.951 15 C -0.163 4.163 16 N -0.724 5.724 17 C -0.239 4.239 18 H 0.070 0.930 19 C -0.012 4.012 20 N -0.932 5.932 21 Si 0.905 3.095 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 H 0.079 0.921 26 H 0.063 0.937 27 H 0.098 0.902 28 H 0.161 0.839 29 H 0.161 0.839 30 H 0.139 0.861 31 H 0.396 0.604 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.046 0.954 37 H 0.035 0.965 38 H 0.054 0.946 39 H 0.383 0.617 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.803 14.518 8.568 20.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.079 4.079 3 C -0.066 4.066 4 N -0.178 5.178 5 C -0.072 4.072 6 C -0.158 4.158 7 C -0.101 4.101 8 C 0.336 3.664 9 O -0.396 6.396 10 N -0.371 5.371 11 C -0.001 4.001 12 C -0.172 4.172 13 C 0.064 3.936 14 H 0.067 0.933 15 C -0.224 4.224 16 N -0.366 5.366 17 C -0.370 4.370 18 H 0.088 0.912 19 C -0.208 4.208 20 N -0.581 5.581 21 Si 0.736 3.264 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 H 0.097 0.903 26 H 0.081 0.919 27 H 0.117 0.883 28 H 0.178 0.822 29 H 0.178 0.822 30 H 0.157 0.843 31 H 0.230 0.770 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.217 0.783 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.210 15.122 8.680 20.205 hybrid contribution -0.558 -1.349 -0.417 1.519 sum 9.652 13.773 8.262 18.738 Atomic orbital electron populations 1.21012 0.88898 1.03639 1.03996 1.21167 0.98591 0.92437 0.95734 1.22745 0.89730 0.97414 0.96705 1.67534 1.08351 1.31831 1.10057 1.22690 1.00510 0.87260 0.96781 1.22350 0.93908 1.00204 0.99369 1.20364 0.93789 0.94182 1.01760 1.18136 0.87105 0.83530 0.77625 1.90776 1.13332 1.86895 1.48571 1.46046 1.10722 1.06530 1.73758 1.21529 0.95408 0.79612 1.03531 1.22074 0.97798 0.95603 1.01709 1.20146 0.91019 0.90277 0.92137 0.93255 1.22426 0.99356 1.01134 0.99458 1.42457 1.28129 1.53396 1.12611 1.19217 1.01091 1.18191 0.98499 0.91204 1.24724 0.99432 1.00408 0.96261 1.69656 1.40010 1.44512 1.03904 0.86220 0.83293 0.80209 0.76651 1.21690 1.21840 1.20810 0.90295 0.91852 0.88317 0.82154 0.82220 0.84323 0.76989 0.91512 0.89411 0.91537 0.91867 0.93517 0.94562 0.92678 0.78297 0.93546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 8.84 36.01 0.32 -1.01 16 2 C -0.08 -0.88 5.93 -104.06 -0.62 -1.50 16 3 C 0.09 0.93 10.83 -17.59 -0.19 0.74 16 4 N -0.47 -5.06 10.33 -13.31 -0.14 -5.20 16 5 C 0.08 0.76 11.17 -17.60 -0.20 0.56 16 6 C -0.14 -1.27 9.60 -39.03 -0.37 -1.64 16 7 C -0.09 -1.08 5.91 -104.65 -0.62 -1.70 16 8 C 0.55 8.03 7.74 -12.19 -0.09 7.94 16 9 O -0.52 -9.41 13.53 5.35 0.07 -9.33 16 10 N -0.72 -9.33 5.51 -61.15 -0.34 -9.66 16 11 C 0.12 1.93 5.56 -4.04 -0.02 1.91 16 12 C -0.13 -1.94 4.87 -26.73 -0.13 -2.07 16 13 C 0.17 3.25 2.89 -67.93 -0.20 3.05 16 14 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 15 C -0.16 -2.78 9.49 37.15 0.35 -2.43 16 16 N -0.72 -17.44 4.57 -53.42 -0.24 -17.68 16 17 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 18 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 19 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 20 N -0.93 -28.05 13.06 55.49 0.72 -27.33 16 21 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.06 0.55 8.06 -51.93 -0.42 0.13 16 27 H 0.10 1.38 5.95 -51.93 -0.31 1.07 16 28 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 29 H 0.16 0.95 8.06 -52.48 -0.42 0.52 16 30 H 0.14 0.87 6.58 -52.49 -0.35 0.53 16 31 H 0.40 3.79 6.65 -40.82 -0.27 3.52 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.09 1.76 7.75 -51.93 -0.40 1.35 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.38 9.86 7.80 -40.82 -0.32 9.54 16 40 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 336.27 15.07 5.07 5.07 Total: -1.00 -32.75 336.27 -7.73 -40.48 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -5.84 Total: 9.48 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -2.02 Total: -3.26 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: 0.01 Total: -59.88 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.07 Total: -9.33 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.75 -7.73 -40.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690841656.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.686 kcal (2) G-P(sol) polarization free energy of solvation -32.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds