Wall clock time and date at job start Mon Mar 30 2020 02:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38172 * 120.49609 * 2 1 4 4 N 1.31805 * 120.88934 * 180.02562 * 3 2 1 5 5 C 1.31821 * 122.04947 * 359.97438 * 4 3 2 6 6 C 1.38125 * 120.90166 * 0.02562 * 5 4 3 7 7 C 1.39794 * 120.50174 * 180.02562 * 2 1 3 8 8 C 1.48151 * 120.92200 * 0.02562 * 7 2 1 9 9 O 1.21520 * 120.00018 * 353.89927 * 8 7 2 10 10 N 1.34773 * 120.00194 * 173.90280 * 8 7 2 11 11 C 1.46503 * 120.00087 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.47023 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.47218 * 179.97438 * 12 11 10 14 14 H 1.08998 * 109.46828 * 304.99911 * 13 12 11 15 15 C 1.52994 * 109.47393 * 184.99688 * 13 12 11 16 16 N 1.46503 * 109.46859 * 64.99401 * 13 12 11 17 17 C 1.36939 * 119.99832 * 205.00055 * 16 13 12 18 18 H 1.08001 * 120.00180 * 0.02562 * 17 16 13 19 19 C 1.38810 * 120.00075 * 180.02562 * 17 16 13 20 20 N 1.31620 * 119.99829 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00149 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47014 * 90.00079 * 21 19 17 23 23 H 1.48500 * 109.47133 * 210.00137 * 21 19 17 24 24 H 1.48500 * 109.46757 * 330.00385 * 21 19 17 25 25 H 1.09004 * 109.47271 * 263.65001 * 1 2 3 26 26 H 1.09001 * 109.47409 * 23.64553 * 1 2 3 27 27 H 1.08997 * 109.46828 * 143.64974 * 1 2 3 28 28 H 1.07996 * 119.55522 * 0.03793 * 3 2 1 29 29 H 1.08003 * 119.55098 * 179.97438 * 5 4 3 30 30 H 1.07996 * 120.49928 * 180.02562 * 6 5 4 31 31 H 0.96998 * 119.99972 * 359.97438 * 10 8 7 32 32 H 1.09002 * 109.46947 * 299.99873 * 11 10 8 33 33 H 1.08997 * 109.47178 * 59.99273 * 11 10 8 34 34 H 1.09002 * 109.46992 * 299.99645 * 12 11 10 35 35 H 1.08997 * 109.47900 * 59.99515 * 12 11 10 36 36 H 1.09006 * 109.47081 * 299.99725 * 15 13 12 37 37 H 1.09001 * 109.47254 * 59.99948 * 15 13 12 38 38 H 1.08998 * 109.47570 * 180.02562 * 15 13 12 39 39 H 0.97000 * 120.00226 * 25.00814 * 16 13 12 40 40 H 0.97003 * 119.99602 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1906 0.0000 4 7 3.5262 1.1996 -0.0005 5 6 4.2334 0.0871 -0.0005 6 6 3.6137 -1.1473 -0.0006 7 6 2.2166 -1.2045 -0.0005 8 6 1.5079 -2.5055 -0.0017 9 8 0.2983 -2.5387 0.1097 10 7 2.2048 -3.6524 -0.1262 11 6 1.5040 -4.9389 -0.1279 12 6 2.5197 -6.0728 -0.2807 13 6 1.7879 -7.4164 -0.2818 14 1 1.1772 -7.4982 0.6173 15 6 2.8104 -8.5541 -0.3091 16 7 0.9287 -7.5035 -1.4653 17 6 -0.1724 -8.3175 -1.4536 18 1 -0.4076 -8.8951 -0.5718 19 6 -0.9862 -8.4005 -2.5750 20 7 -0.6992 -7.6970 -3.6498 21 14 -2.4878 -9.5115 -2.5593 22 1 -3.6634 -8.7480 -2.0691 23 1 -2.7550 -10.0022 -3.9352 24 1 -2.2388 -10.6676 -1.6611 25 1 -0.3634 -0.1137 1.0214 26 1 -0.3634 0.9414 -0.4122 27 1 -0.3633 -0.8277 -0.6091 28 1 1.6691 2.1263 0.0006 29 1 5.3121 0.1416 -0.0014 30 1 4.1995 -2.0546 -0.0002 31 1 3.1703 -3.6259 -0.2154 32 1 0.9638 -5.0596 0.8112 33 1 0.7990 -4.9675 -0.9587 34 1 3.0602 -5.9522 -1.2195 35 1 3.2244 -6.0440 0.5504 36 1 3.4211 -8.4723 -1.2083 37 1 3.4497 -8.4894 0.5714 38 1 2.2891 -9.5114 -0.3104 39 1 1.1398 -6.9846 -2.2571 40 1 -1.2678 -7.7552 -4.4336 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690841656.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:46 Heat of formation + Delta-G solvation = -21.792316 kcal Electronic energy + Delta-G solvation = -20827.122029 eV Core-core repulsion = 17640.851453 eV Total energy + Delta-G solvation = -3186.270576 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.77809 -40.11649 -38.16387 -36.05656 -34.42042 -34.26804 -33.10748 -31.00715 -29.66896 -28.27213 -26.08733 -25.59321 -24.11052 -22.94154 -22.05751 -21.24132 -19.38755 -18.96245 -17.81523 -16.98248 -16.71058 -16.40838 -16.29280 -16.17277 -15.77626 -15.33922 -15.13207 -14.74404 -14.40158 -14.32491 -14.11527 -13.66707 -13.59533 -13.35418 -13.23090 -12.83903 -12.63321 -12.52809 -12.29053 -12.23859 -12.10152 -11.65567 -11.60295 -11.26170 -10.94658 -10.92583 -10.37906 -10.16242 -9.92277 -8.97828 -7.92856 -5.19493 -0.34809 0.07313 1.45926 1.47787 1.55230 1.79801 2.00691 2.57055 2.80420 3.41665 3.45994 3.52055 3.75511 3.81568 3.91394 3.96097 3.99176 4.21464 4.35444 4.42056 4.59802 4.66680 4.73911 4.74487 4.77325 4.82737 4.88422 5.01854 5.06827 5.10198 5.18817 5.33414 5.40144 5.44897 5.54375 5.62140 5.62482 6.30337 6.44260 6.89052 7.11086 7.36434 8.14501 8.35395 9.30667 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022972 B = 0.003555 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.560521 B = 7874.231697 C = 8703.632652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.093 4.093 3 C 0.092 3.908 4 N -0.484 5.484 5 C 0.086 3.914 6 C -0.127 4.127 7 C -0.110 4.110 8 C 0.545 3.455 9 O -0.565 6.565 10 N -0.704 5.704 11 C 0.133 3.867 12 C -0.116 4.116 13 C 0.164 3.836 14 H 0.043 0.957 15 C -0.153 4.153 16 N -0.736 5.736 17 C -0.233 4.233 18 H 0.074 0.926 19 C -0.077 4.077 20 N -0.970 5.970 21 Si 0.965 3.035 22 H -0.292 1.292 23 H -0.297 1.297 24 H -0.268 1.268 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.065 0.935 28 H 0.184 0.816 29 H 0.196 0.804 30 H 0.171 0.829 31 H 0.416 0.584 32 H 0.055 0.945 33 H 0.038 0.962 34 H 0.073 0.927 35 H 0.108 0.892 36 H 0.045 0.955 37 H 0.076 0.924 38 H 0.031 0.969 39 H 0.372 0.628 40 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.385 15.027 9.914 22.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.096 4.096 3 C -0.065 4.065 4 N -0.193 5.193 5 C -0.070 4.070 6 C -0.147 4.147 7 C -0.121 4.121 8 C 0.333 3.667 9 O -0.445 6.445 10 N -0.356 5.356 11 C 0.009 3.991 12 C -0.155 4.155 13 C 0.055 3.945 14 H 0.061 0.939 15 C -0.213 4.213 16 N -0.377 5.377 17 C -0.365 4.365 18 H 0.092 0.908 19 C -0.269 4.269 20 N -0.621 5.621 21 Si 0.795 3.205 22 H -0.220 1.220 23 H -0.224 1.224 24 H -0.193 1.193 25 H 0.091 0.909 26 H 0.106 0.894 27 H 0.084 0.916 28 H 0.201 0.799 29 H 0.213 0.787 30 H 0.188 0.812 31 H 0.254 0.746 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.091 0.909 35 H 0.126 0.874 36 H 0.064 0.936 37 H 0.095 0.905 38 H 0.051 0.949 39 H 0.204 0.796 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 12.857 15.621 10.077 22.602 hybrid contribution -1.267 -1.460 -0.750 2.073 sum 11.590 14.161 9.327 20.539 Atomic orbital electron populations 1.20895 0.89416 1.03536 1.03154 1.21282 0.98528 0.93079 0.96720 1.23045 0.89801 0.97687 0.95970 1.67615 1.08516 1.32820 1.10383 1.23304 1.02074 0.86543 0.95090 1.22661 0.92565 1.01829 0.97692 1.20292 0.95184 0.92713 1.03899 1.18653 0.86769 0.84733 0.76579 1.90762 1.15456 1.87633 1.50605 1.45794 1.11583 1.05142 1.73101 1.21166 0.95383 0.81651 1.00865 1.21930 0.97361 0.92281 1.03905 1.20459 0.91081 0.93314 0.89602 0.93905 1.22264 0.98935 0.98776 1.01352 1.42664 1.28351 1.52686 1.13951 1.19598 1.01501 1.17290 0.98108 0.90816 1.25472 1.02515 1.02561 0.96384 1.69806 1.41209 1.46661 1.04433 0.85251 0.79977 0.78870 0.76385 1.21971 1.22356 1.19315 0.90859 0.89351 0.91638 0.79903 0.78747 0.81180 0.74618 0.92660 0.94307 0.90853 0.87416 0.93606 0.90500 0.94946 0.79642 0.94305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.63 8.84 71.24 0.63 -2.00 16 2 C -0.09 -2.10 5.93 -19.50 -0.12 -2.22 16 3 C 0.09 1.72 10.83 84.68 0.92 2.64 16 4 N -0.48 -9.22 10.33 -196.01 -2.03 -11.24 16 5 C 0.09 1.25 11.17 84.67 0.95 2.20 16 6 C -0.13 -1.96 9.60 22.63 0.22 -1.74 16 7 C -0.11 -2.54 5.91 -19.88 -0.12 -2.66 16 8 C 0.55 16.07 7.74 86.88 0.67 16.75 16 9 O -0.56 -21.65 13.53 -3.78 -0.05 -21.70 16 10 N -0.70 -17.54 5.51 -465.68 -2.57 -20.10 16 11 C 0.13 4.23 5.56 86.38 0.48 4.71 16 12 C -0.12 -3.13 4.87 30.59 0.15 -2.98 16 13 C 0.16 5.90 2.89 44.99 0.13 6.03 16 14 H 0.04 1.60 8.08 -2.39 -0.02 1.58 16 15 C -0.15 -4.86 9.49 71.98 0.68 -4.17 16 16 N -0.74 -35.88 4.57 -322.94 -1.48 -37.35 16 17 C -0.23 -12.87 9.93 84.03 0.83 -12.03 16 18 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 19 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 20 N -0.97 -60.11 13.06 21.65 0.28 -59.83 16 21 Si 0.97 47.02 29.55 68.60 2.03 49.05 16 22 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 23 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 24 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 25 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.09 1.51 8.06 -2.39 -0.02 1.49 16 27 H 0.06 1.98 5.95 -2.39 -0.01 1.97 16 28 H 0.18 2.37 8.06 -2.91 -0.02 2.35 16 29 H 0.20 1.38 8.06 -2.91 -0.02 1.36 16 30 H 0.17 1.40 6.58 -2.91 -0.02 1.38 16 31 H 0.42 6.75 6.65 -92.71 -0.62 6.14 16 32 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.04 1.63 7.75 -2.39 -0.02 1.61 16 34 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.37 19.63 7.80 -92.71 -0.72 18.91 16 40 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -74.62 336.27 1.80 -72.82 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: -0.29 Total: 27.85 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: 5.89 Total: 0.51 kcal Atomic # 7 Polarization: -122.74 SS G_CDS: -5.79 Total: -128.53 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.05 Total: -21.70 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -74.62 1.80 -72.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690841656.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.028 kcal (2) G-P(sol) polarization free energy of solvation -74.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds